0debec9f2d
gnu: tigervnc-server: Move source production into origin snippet.
...
This will make it possible to patch command references in source files, and
also makes it more transparent as to what sources get used.
* gnu/packages/vnc.scm (tigervnc-server): Re-flow comment.
[source]: Inherit from xorg-server. Add a snippet. Use a patch to apply the
xserver patch. Fix file name.
[phases]{copy-tvnc-xserver, patch-xserver}: Delete phases.
{build-tigervnc, install-tigervnc-aux}: Adjust accordingly.
2022-10-07 10:11:10 -04:00
c93b249dc0
gnu: tigervnc-server: Use new style inputs, gexps.
...
* gnu/packages/vnc.scm (%tigervnc-client-source): New variable.
(tigervnc-server): Move input fields after arguments.
[native-inputs]: Use new style and 'modify-inputs'. Do not add
tigervnc-client regular inputs.
[configure-flags]: Use gexps, cons* instead of append.
[phases]: Use gexps.
{check}: Replace smiley with an explanatory comment.
{copy-tvnc-xserver}: Adjust default Makefile variables, which simplifies
needed bindings in other phases.
{build-tigervnc, build, install-tigervnc-aux, install}: Remove let*-bound
variables.
{build-tigervnc, build}: Honor PARALLEL-BUILD?.
2022-10-07 10:11:10 -04:00
06deab3321
gnu: libnma: Depend on GTK 4.x only on supported platforms.
...
Partly fixes <https://issues.guix.gnu.org/58352 >.
* gnu/packages/gnome.scm (libnma)[arguments]: Set "-Dlibnma_gtk4=false"
when (supported-package? gtk) returns #f.
[inputs]: Adjust accordingly.
2022-10-07 16:01:39 +02:00
a52f39ad0c
gnu: rest@0.9.1: Remove dependency on gtksourceview and libadwaita.
...
Partly fixes <https://issues.guix.gnu.org/58352 >.
This also reduces the closure size of rest@0.9.1 from 2.1GiB to
498MiB (on x86_64-linux).
* gnu/packages/gnome.scm (rest-next)[arguments]: Pass the
"-Dexamples=false" config flag.
* gnu/packages/gnome.scm (rest-next)[inputs]: Remove GTKSOURCEVIEW and
LIBADWAITA.
2022-10-07 16:01:39 +02:00
8319be779f
gnu: extractpdfmark: Improve package style.
...
* gnu/packages/pdf.scm (extractpdfmark)[arguments]: Use G-expressions. Fix
phase name.
[native-inputs]: Remove labels.
2022-10-07 00:53:32 +02:00
eea2d5b6f7
gnu: extractpdfmark: Update to 1.1.1.
...
* gnu/packages/pdf.scm (extractpdfmark): Update to 1.1.1.
2022-10-07 00:53:31 +02:00
63cece5787
gnu: emacs-lcr: Update to 1.2.
...
* gnu/packages/emacs-xyz.scm (emacs-lcr): Update to 1.2.
2022-10-07 00:53:31 +02:00
c558fed4db
gnu: emacs-org-re-reveal: Update to 3.16.0.
...
* gnu/packages/emacs-xyz.scm (emacs-org-re-reveal): Update to 3.16.0.
2022-10-07 00:53:31 +02:00
23c97e2e88
gnu: emacs-ement: Update to 0.3.1.
...
* gnu/packages/emacs-xyz.scm (emacs-ement): Update to 0.3.1.
2022-10-07 00:53:30 +02:00
22498be0a1
gnu: emacs-emms: Update to 12.
...
* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 12.
2022-10-07 00:53:30 +02:00
9cd3c2dc18
gnu: emacs-debbugs: Update to 0.34.
...
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.34.
2022-10-07 00:53:30 +02:00
cb731c80ff
gnu: julius: Update to 1.7.0.
...
* gnu/packages/games.scm (julius): Update to 1.7.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-06 23:17:05 +02:00
37ed844711
gnu: squid: Enable TLS features.
...
Despite openssl being listed as an input, it was not actually enabled by
default. Fixing that using a configure flag.
* gnu/packages/networking.scm (squid)[arguments]: Add "--with-openssl"
to #:configure-flags.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-06 23:17:05 +02:00
2a51fb1d29
gnu: nyacc: Update to 1.07.4.
...
* gnu/packages/mes.scm (nyacc): Update to 1.07.4.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-06 23:17:05 +02:00
3a5ae8c070
gnu: sssd: Update to 2.7.4.
...
* gnu/packages/sssd.scm (sssd): Update to 2.7.4.
* gnu/packages/patches/sssd-optional-systemd.patch: Update patch.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-06 23:17:05 +02:00
a0c83aa04b
gnu: python-textual: Remove input labels.
...
* gnu/packages/python-xyz.scm (python-textual)[arguments]: Define the
'tests' origin here.
[native-inputs]: Remove "tests" input and remove input labels.
2022-10-06 23:17:04 +02:00
96cbfc6202
gnu: Add python-textual.
...
* gnu/packages/python-xyz.scm (python-textual): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-06 23:17:04 +02:00
e4951f7c71
gnu: python-renpy: Update to 8.0.3.
...
* gnu/packages/game-development.scm (python-renpy): Update to 8.0.3.
2022-10-06 21:16:45 +02:00
b60b756226
gnu: python-pygame-sdl2: Update to 2.1.0-for-renpy-8.0.3.
...
* gnu/packages/game-development.scm (python-pygame-sdl2): Update to
2.1.0-for-renpy-8.0.3.
2022-10-06 21:16:45 +02:00
3657b4daea
gnu: tessen: Update to 2.1.2.
...
* gnu/packages/password-utils.scm (tessen): Update to 2.1.2.
[arguments]: Substitute notify-send, wl-copy and xdg-open.
[inputs] Add libnotify, wl-clipboard and xdg-utils.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-06 19:49:33 +03:00
0179b21641
gnu: weechat-wee-slack: Update to 2.9.0.
...
* gnu/packages/messaging.scm (weechat-wee-slack): Update to 2.9.0.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-06 19:35:01 +03:00
ac3582f990
gnu: zfs: Update to 2.1.6.
...
* gnu/packages/file-systems.scm (zfs): Update to 2.1.6.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-06 19:27:44 +03:00
2f88f5c06f
gnu: komikku: Update to 1.1.0.
...
* gnu/packages/gnome.scm (komikku): Update to 1.1.0.
2022-10-06 17:25:35 +02:00
53e086c5c6
gnu: Add waybar-cpu-histogram.
...
* gnu/packages/wm.scm (waybar-cpu-histogram): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-10-06 15:08:03 +01:00
eb5b104ca8
gnu: libdaemon: Fix targeting riscv64.
...
* gnu/packages/libdaemon.scm (libdaemon)[native-inputs,arguments]: Treat
targeting riscv64 like aarch64 is handled.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-10-06 15:08:03 +01:00
52b9f0ef1e
gnu: Add discregrid.
...
* gnu/packages/graphics.scm (discregrid): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-10-06 15:08:03 +01:00
e4593e2114
gnu: Add r-gldex.
...
* gnu/packages/cran.scm (r-gldex): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-10-06 15:08:03 +01:00
53eea4d657
gnu: Add r-spacefillr.
...
* gnu/packages/cran.scm (r-spacefillr): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-10-06 15:08:03 +01:00
7a271e6886
gnu: Add cpass.
...
* gnu/packages/password-utils.scm (cpass): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-10-06 15:08:03 +01:00
44f8aa26bc
gnu: Add wlgreet.
...
* gnu/packages/admin.scm (wlgreet): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-10-06 15:08:03 +01:00
829c2eaa7f
gnu: Add rust-os-pipe-0.8.
...
* gnu/packages/crates-io.scm (rust-os-pipe-0.8): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-10-06 15:08:02 +01:00
b370ac2103
gnu: Add rust-greetd-ipc-0.8.
...
* gnu/packages/crates-io.scm (rust-greetd-ipc-0.8): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-10-06 15:08:02 +01:00
020dc0a1f1
gnu: plink: Change origin URL.
...
pngu.mgh.harvard.edu seems to time out.
* gnu/packages/bioinformatics.scm (plink)[origin]. Change URL.
2022-10-06 15:08:02 +01:00
b86867417f
gnu: celluloid: Do not install icon cache.
...
Fixes <https://issues.guix.gnu.org/58207 >.
* gnu/packages/video.scm (celluloid)[arguments]: Add phase
disable-postinstall-script so postinstall-script does nothing. Build
with glib-or-gtk meson option.
[native-inputs]: Remove desktop-file-utils, gtk:bin.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-06 16:58:15 +03:00
2408a10325
gnu: quaternion: Update to 0.0.95.1.
...
* gnu/packages/messaging.scm (quaternion): Update to 0.0.95.1.
[inputs]: Add qtgraphicaleffects.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-06 16:26:17 +03:00
dd7c8537d2
gnu: libqmatrixclient: Update to 0.6.11.
...
* gnu/packages/messaging.scm (libqmatrixclient): Update to 0.6.11.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-06 16:26:11 +03:00
a503d0ba8c
gnu: gitolite: Switch to G-expressions.
...
* gnu/packages/version-control.scm (gitolite)[arguments]: Use G-expressions.
[inputs]: Add grep and sed.
2022-10-06 08:38:50 -04:00
e069c6df5e
gnu: Add r-dada2.
...
* gnu/packages/bioconductor.scm (r-dada2): New variable.
2022-10-06 12:38:34 +02:00
40a42c4348
gnu: linux-libre: Support zram on all kernels.
...
* gnu/packages/linux.scm (%default-extra-linux-options): Add config
options to add zram support.
2022-10-06 09:44:54 +03:00
e543bd8321
gnu: linux-libre 4.19: Update to 4.19.261.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.261.
(linux-libre-4.19-pristine-source): Update hash.
2022-10-06 00:57:06 -04:00
1b7cb8a977
gnu: linux-libre 5.4: Update to 5.4.216.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.216.
(linux-libre-5.4-pristine-source, deblob-scripts-5.4): Update hashes.
2022-10-06 00:57:06 -04:00
93852b83ec
gnu: linux-libre 5.10: Update to 5.10.147.
...
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.147.
(linux-libre-5.10-pristine-source): Update hash.
2022-10-06 00:57:06 -04:00
a175ef12b6
gnu: linux-libre 5.15: Update to 5.15.72.
...
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.72.
(linux-libre-5.15-pristine-source): Update hash.
2022-10-06 00:57:05 -04:00
d912c36330
gnu: linux-libre 5.19: Update to 5.19.14.
...
* gnu/packages/linux.scm (linux-libre-5.19-version): Update to 5.19.14.
(linux-libre-5.19-pristine-source): Update hash.
2022-10-06 00:57:02 -04:00
43b8df4bec
gnu: Add splash.
...
* gnu/packages/astronomy.scm (splash): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-06 00:11:18 +02:00
40ad967322
services: dhcp-client: Implement and use a configuration record.
...
* gnu/services/networking.scm (dhcp-client-configuration): New record
configuration.
(dhcp-client-shepherd-service): Implement a shepher service. Provide a
deprication message for legacy configurations.
(dhcp-client-service-type): Use dhcp-client-shepherd-service.
* doc/guix.texi (Networking Setup): Update.
* po/guix/POTFILES.in: Add 'gnu/services/networking.scm'.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-10-06 00:11:18 +02:00
9be5f88e18
gnu: gnome-maps: Properly wrap GI_TYPELIB_PATH.
...
This fixes a bug reported by pkill9 and tschilptschilp23 in IRC.
See <http://logs.guix.gnu.org/guix/2022-10-01.log#031053 > and
<http://logs.guix.gnu.org/guix/2022-10-05.log#214334 >.
It does so by using a snippet that's also applied in gnome-shell.
* gnu/packages/geo.scm (gnome-maps)[#:phases]: Remove ‘patch-dbus-service’.
Update ‘wrap’ so that it uses GJS-specific wrapping code rather than
wrap-program.
2022-10-05 22:05:43 +02:00
ccbeb3fde6
gnu: gnome-maps: Delete trailing space.
...
* gnu/packages/geo.scm (gnome-maps)[inputs]: Delete trailing spaces.
2022-10-05 21:45:18 +02:00
7ddba7bf66
gnu: gnome-maps: Update to 43.0.
...
* gnu/packages/geo.scm (gnome-maps): Update to 43.0.
[arguments]<#:meson>: Use meson-0.63.
<#:phases>: Replace ‘skip-gtk-update-icon-cache’ with
‘skip-cache-and-database-updates’. Update accordingly.
2022-10-05 21:44:00 +02:00
fd6cd9de86
gnu: Add megahit.
...
* gnu/packages/bioinformatics.scm (megahit): New variable.
2022-10-05 17:59:04 +02:00
be1d561f1a
gnu: Add cd-hit-auxtools.
...
* gnu/packages/bioinformatics.scm (cd-hit-auxtools): New variable.
2022-10-05 14:28:24 +02:00
3f627bf56b
gnu: cd-hit: Update to 4.8.1.
...
* gnu/packages/bioinformatics.scm (cd-hit): Update to 4.8.1.
[arguments]: Do not use quasiquote; remove trailing #T from build phases.
[inputs]: Add zlib.
2022-10-05 13:47:57 +02:00
9ed65e6af7
gnu: kaiju: Update to 1.9.0.
...
* gnu/packages/bioinformatics.scm (kaiju): Update to 1.9.0.
[arguments]: Use gexps; wrap scripts in install phase.
[inputs]: Add bzip2, coreutils, curl, gawk, guile-3.0, gzip,
python-wrapper, tar, and wget.
2022-10-04 23:10:56 +02:00
a96ebe47b0
gnu: ibus: Build with GTK4.
...
* gnu/packages/ibus.scm (ibus)[arguments]: Add “--enable-gtk4”.
[inputs]: Add gtk and pango-next.
2022-10-04 20:40:46 +02:00
c264265abd
gnu: sdl2: Use ibus-minimal instead of ibus.
...
This prevents an input cycle between GTK -> ffmpeg -> sdl2 -> ibus -> GTK.
* gnu/packages/sdl.scm (sdl2)[inputs]: Replace ibus with ibus-minimal.
2022-10-04 20:40:46 +02:00
ef53c075a1
gnu: Add ibus-minimal.
...
* gnu/packages/ibus.scm (ibus-minimal): New variable.
(ibus): Inherit from ibus-minimal.
2022-10-04 20:40:45 +02:00
1c821a3a63
gnu: icedove: Update to 102.3.1 [security fixes].
...
Fixes CVE-2022-39236, CVE-2022-39249, CVE-2022-39250 and CVE-2022-39251.
* gnu/packages/gnuzilla.scm (icedove): Update to 102.3.1.
2022-10-04 20:36:24 +02:00
ecee392ef1
gnu: eog-plugins: Fix source URL.
...
The incorrect URL was introduced in
d6d861c615
2022-10-04 18:15:36 +02:00
58f6b246a6
gnu: Add awscli-2.
...
* gnu/packages/python-web.scm (awscli-2): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-04 18:15:36 +02:00
d7932b731f
gnu: Add python-executor.
...
* gnu/packages/python-xyz.scm (python-executor): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-04 18:15:36 +02:00
0669bf64f7
gnu: Add python-property-manager.
...
* gnu/packages/python-xyz.scm (python-property-manager): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-04 18:15:35 +02:00
f83622f17d
services: anonip: Bail out when the input is not a FIFO.
...
* gnu/services/web.scm (anonip-shepherd-service)[start]: Accept zero
arguments. Define 'spawn'. Print a message and return #f when #$INPUT
does not denote a FIFO.
2022-10-04 18:15:35 +02:00
ae1af5d787
gnu: guix: Update to 17134b9.
...
* gnu/packages/package-management.scm (guix): Update to 17134b9
2022-10-04 18:15:35 +02:00
7030f592c6
home: Add home-batsignal-service-type.
...
* gnu/home/services/pm.scm (home-batsignal-service-type): New variable.
(home-batsignal-configuration): New record type.
* doc/guix.texi: Document them.
* gnu/local.mk: Add gnu/home/services/pm.scm.
2022-10-04 17:04:45 +04:00
ba84c8c448
gnu: augustus: Update to 3.2.0.
...
* gnu/packages/games.scm (augustus): Update to 3.2.0.
[inputs]: Add expat.
[snippet]: Unbundle it. Drop trailing #t.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-10-04 13:37:43 +02:00
31e19fd874
gnu: emacs-lsp-mode: Update to 26c4d3e.
...
* gnu/packages/emacs-xyz.scm (emacs-lsp-mode): Update to 26c4d3e.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-10-04 13:37:43 +02:00
7e9534150b
gnu: emacs-nov-el: Update to 0.4.0 and use gexps.
...
* gnu/packages/emacs-xyz.scm (emacs-nov-el): Update to 0.4.0.
[arguments]: Use gexps.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-10-04 13:37:42 +02:00
df5a021f66
gnu: emacs-modus-themes: Update to 2.7.1.
...
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 2.7.1.
2022-10-04 13:37:42 +02:00
5e8221822e
gnu: emacs-org-mime: Update to 0.3.2.
...
* gnu/packages/emacs-xyz.scm (emacs-org-mime): Update to 0.3.2.
2022-10-04 13:37:42 +02:00
fd7c34f2bf
gnu: Add emacs-circadian.
...
* gnu/packages/emacs-xyz.scm (emacs-circadian): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-10-04 13:37:41 +02:00
17134b9ec1
gnu: r-tximeta: Update to 1.14.1.
...
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.14.1.
2022-10-03 19:08:09 +02:00
94693d1980
gnu: r-bionero: Update to 1.4.2.
...
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.4.2.
[propagated-inputs]: Remove r-deseq2 and r-ggpubr; add r-ggrepel and r-patchwork.
2022-10-03 19:08:09 +02:00
202fd44ca0
gnu: r-biodb: Update to 1.4.2.
...
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.4.2.
2022-10-03 19:08:09 +02:00
87c097631f
gnu: r-biocdockermanager: Update to 1.8.1.
...
* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.8.1.
2022-10-03 19:08:09 +02:00
6bf59194a6
gnu: r-basilisk: Update to 1.8.1.
...
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.8.1.
2022-10-03 19:08:09 +02:00
2e7872f6c9
gnu: r-bgeecall: Update to 1.12.2.
...
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.12.2.
2022-10-03 19:08:09 +02:00
869b1f9f5c
gnu: r-pathview: Update to 1.36.1.
...
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.36.1.
2022-10-03 19:08:09 +02:00
547d4670e7
gnu: r-delayedmatrixstats: Update to 1.18.1.
...
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.18.1.
2022-10-03 19:08:08 +02:00
cc719399c9
gnu: r-scran: Update to 1.24.1.
...
* gnu/packages/bioconductor.scm (r-scran): Update to 1.24.1.
2022-10-03 19:08:08 +02:00
1527d2e9df
gnu: r-scuttle: Update to 1.6.3.
...
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.6.3.
2022-10-03 19:08:08 +02:00
d66a466909
gnu: r-hdf5array: Update to 1.24.2.
...
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.2.
2022-10-03 19:08:08 +02:00
78ff15ae42
gnu: r-biocpkgtools: Update to 1.14.1.
...
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.14.1.
2022-10-03 19:08:08 +02:00
9af834ad37
gnu: r-biocviews: Update to 1.64.1.
...
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.64.1.
2022-10-03 19:08:08 +02:00
8441c1f9ea
gnu: r-bioccheck: Update to 1.32.1.
...
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.32.1.
2022-10-03 19:08:08 +02:00
e30b2aeaa2
gnu: r-cytoml: Update to 2.8.1.
...
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.8.1.
2022-10-03 19:08:08 +02:00
10c006c21d
gnu: r-opencyto: Update to 2.8.4.
...
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.8.4.
2022-10-03 19:08:08 +02:00
bceed10243
gnu: r-flowstats: Update to 4.8.2.
...
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.8.2.
2022-10-03 19:08:08 +02:00
eed76ad91a
gnu: r-flowviz: Update to 1.60.2.
...
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.60.2.
2022-10-03 19:08:08 +02:00
f82d20caae
gnu: r-ggcyto: Update to 1.24.1.
...
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.24.1.
2022-10-03 19:08:08 +02:00
1c3750c9ea
gnu: r-ncdfflow: Update to 2.42.1.
...
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.42.1.
2022-10-03 19:08:08 +02:00
23e42e77d4
gnu: r-rsubread: Update to 2.10.5.
...
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.5.
2022-10-03 19:08:07 +02:00
597106f234
gnu: r-rgadem: Update to 2.44.1.
...
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.44.1.
2022-10-03 19:08:07 +02:00
83f0c1a39d
gnu: r-enrichplot: Update to 1.16.2.
...
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.16.2.
2022-10-03 19:08:07 +02:00
842431a036
gnu: r-dose: Update to 3.22.1.
...
* gnu/packages/bioconductor.scm (r-dose): Update to 3.22.1.
2022-10-03 19:08:07 +02:00
2b4a7fa22e
gnu: r-residualmatrix: Update to 1.6.1.
...
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.6.1.
2022-10-03 19:08:07 +02:00
1cb30ba714
gnu: r-ggtree: Update to 3.4.4.
...
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.4.4.
2022-10-03 19:08:07 +02:00
a047448aad
gnu: r-treeio: Update to 1.20.2.
...
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.20.2.
2022-10-03 19:08:07 +02:00
41f029c12a
gnu: r-scaledmatrix: Update to 1.4.1.
...
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.4.1.
2022-10-03 19:08:07 +02:00
e581479be8
gnu: r-diffbind: Update to 3.6.4.
...
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.6.4.
2022-10-03 19:08:07 +02:00
309cfcedca
gnu: r-zellkonverter: Update to 1.6.5.
...
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.5.
2022-10-03 19:08:07 +02:00
039d894b9d
gnu: r-limma: Update to 3.52.4.
...
* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.4.
2022-10-03 19:08:07 +02:00
a16c87fae1
gnu: r-genomicfeatures: Update to 1.48.4.
...
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.4.
2022-10-03 19:08:06 +02:00
a15ad5ebe3
gnu: r-genomeinfodb: Update to 1.32.4.
...
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.32.4.
2022-10-03 19:08:06 +02:00
ba6a3e7d39
gnu: r-gage: Update to 2.46.1.
...
* gnu/packages/bioconductor.scm (r-gage): Update to 2.46.1.
2022-10-03 19:08:06 +02:00
c82320aa21
gnu: r-complexheatmap: Update to 2.12.1.
...
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.12.1.
2022-10-03 19:08:06 +02:00
038eeeaf2a
gnu: r-chipseeker: Update to 1.32.1.
...
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.32.1.
[propagated-inputs]: Add r-ggvenndiagram.
2022-10-03 19:08:06 +02:00
15243c2f84
gnu: r-biostrings: Update to 2.64.1.
...
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.64.1.
2022-10-03 19:08:06 +02:00
29a947216c
gnu: r-annotationforge: Update to 1.38.1.
...
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.38.1.
2022-10-03 19:08:06 +02:00
96b560ac8b
gnu: r-dearseq: Update to 1.8.4.
...
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.8.4.
2022-10-03 19:08:03 +02:00
06201b76e5
gnu: Remove ocaml-craml.
...
The package doesn't build from source and is unmaintained according to its
maintainer:
https://github.com/realworldocaml/craml/pull/8#issuecomment-529235628 .
* gnu/packages/ocaml.scm (ocaml-craml): Delete variable.
2022-10-03 11:16:15 -04:00
67e9513e40
gnu: r-spams: Update to 2.6.1.
...
* gnu/packages/statistics.scm (r-spams): Update to 2.6.1.
[source]: Migrate from gforge.inria.fr to gitlab.inria.fr, fetching from git.
[phases]: Use gexps.
{patch-paths, mkdist}: New phases.
{no-mtune}: Delete trailing #t.
[native-inputs]: New field.
[home-page]: Update URL.
2022-10-03 11:16:15 -04:00
1390e38264
gnu: ocaml-dose3: Migrate from gforce.inria.fr.
...
* gnu/packages/ocaml.scm (ocaml-dose3) [source]: Fetch from git from inill's gitlab
instance.
2022-10-03 11:16:15 -04:00
a93781b83c
gnu: Remove unused scotch patches.
...
* gnu/packages/patches/scotch-build-parallelism.patch: Delete file.
* gnu/packages/patches/scotch-integer-declarations.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): De-register them.
2022-10-03 11:16:15 -04:00
8ad1978695
gnu: mpfi: Update to 1.5.4-1.b982534.
...
* gnu/packages/multiprecision.scm (mpfi): Update to 1.5.4-1.b982534.
[source]: Fetch from git and use latest commit available.
[tests?]: Delete argument, enabling test suite.
[phases]: New argument.
[native-inputs]: New field.
2022-10-03 11:16:15 -04:00
a001be9664
gnu: mpfi: Use gexps and remove input labels.
...
* gnu/packages/multiprecision.scm (mpfi) [source]: Re-indentation.
[configure-flags]: Use gexps.
[native-inputs]: Remove labels.
2022-10-03 11:16:15 -04:00
efb974a6fa
gnu: isl: Remove outdated comment.
...
* gnu/packages/gcc.scm (isl) [source]: Remove outdated comment.
2022-10-03 11:16:14 -04:00
384b98028c
gnu: gappa: Honor TESTS?.
...
* gnu/packages/algebra.scm (gappa) [phases] {check}: Honor TESTS?.
2022-10-03 11:16:14 -04:00
0f46559331
gnu: gappa: Update to 1.4.1.
...
* gnu/packages/algebra.scm (gappa): Update to 1.4.1.
[source]: Fetch from git.
[arguments]: Use gexps.
[phases]: Delete trailing #t.
[native-inputs]: New field.
2022-10-03 11:16:14 -04:00
bcc61c08be
gnu: gmp-ecm: Update to 7.0.5.
...
* gnu/packages/algebra.scm (gmp-ecm): Update to 7.0.5.
[source]: Fetch from git from gitlab.inria.fr.
[arguments]: Use gexps.
[phases] {patch-paths}: New phase
[native-inputs]: New field.
[home-page]: Update URL.
2022-10-03 11:16:14 -04:00
795f90ea4e
gnu: gf2x: Update to 1.3.0.
...
* gnu/packages/algebra.scm (gf2x): Update to 1.3.0.
2022-10-03 11:16:13 -04:00
2b08945cbb
gnu: gf2x: Migrate from gforge.inria.fr to gitlab.inria.fr.
...
* gnu/packages/algebra.scm (gf2x) [source]: Fetch from git, adjust URL.
[native-inputs]: Add autoconf, automake and libtool.
[home-site]: Update URL.
2022-10-03 11:16:13 -04:00
f64c80a538
gnu: emacs-ag: Do not propagate the-silver-searcher.
...
* gnu/packages/emacs-xyz.scm (emacs-ag)[phases]: Add phase substitute-ag-path
to avoid propagating ag.
[inputs]: Add the-silver-searcher.
[propagated-inputs]: Remove the-silver-searcher.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-03 10:26:42 +03:00
3fbe68d9fc
gnu: emacs-ag: Use gexps.
...
* gnu/packages/emacs-xyz.scm (emacs-ag)[phases]: Use gexps.
{install-info}: Adjust for gexps.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-03 10:26:41 +03:00
582b1f626f
gnu: python-louvain: Fix test.
...
* gnu/packages/graph.scm (python-louvain)[source]: Add patch.
* gnu/packages/patches/python-louvain-fix-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patch.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-02 23:22:07 +02:00
d1c3de6583
gnu: python-setools: Update to 4.4.0.
...
* gnu/packages/selinux.scm (python-setools): Update to 4.4.0.
[source, home-page]: Update url.
[inputs]: Add python-pyqt.
[native-inputs]: Add python-cython.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-02 23:21:58 +02:00
35c92a6324
gnu: python-cfn-lint: Update to 0.65.0.
...
* gnu/packages/python-web.scm (python-cfn-lint): Update to 0.65.0.
[arguments]<#:phases>: Add 'skip-network-test.
[propagated-inputs]: Add python-importlib-resources,
python-jschema-to-python, python-sarif-om.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-02 23:21:51 +02:00
56d8907c5f
gnu: Add python-sarif-om.
...
* gnu/packages/python-web.scm (python-sarif-om): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-02 23:21:47 +02:00
dec74d4563
gnu: Add python-jschema-to-python.
...
* gnu/packages/python-web.scm (python-jschema-to-python): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-02 23:21:38 +02:00
2070ce84ec
gnu: python-aws-sam-translator: Update to 1.51.0.
...
* gnu/packages/python-web.scm (python-aws-sam-translator): Update to 1.51.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-02 23:21:34 +02:00
5440d6be78
gnu: python-networkx: Update to 2.8.6.
...
* gnu/packages/python-xyz.scm (python-networkx): Update to 2.8.6.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-02 23:21:29 +02:00
b479089fdc
gnu: Add texlive-generic-xstring.
...
* gnu/packages/tex.scm (texlive-generic-xstring): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-02 23:20:05 +02:00
69aa41e405
gnu: emacs-telega: Use tdlib-1.8.0
...
emacs-telega is compatible with the latest TDLib major release 1.8.0
* gnu/packages/emacs-xyz.scm: (emacs-telega) Use tdlib-1.8.0 instead of latest tdlib
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-02 23:18:43 +02:00
abc232c42d
gnu: Add tdlib-1.8.0.
...
This is needed for emacs-telega 0.8.3
* gnu/packages/messaging.scm (tdlib-1.8.0): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-02 23:18:43 +02:00
782c7455e1
gnu: ffmpeg@4: Build against SDL2 2.0 so 'ffplay' gets built.
...
Fixes <https://issues.guix.gnu.org/58090 >.
Reported by Zhu Zihao <all_but_last@163.com>.
* gnu/packages/sdl.scm (sdl2-2.0): New variable.
* gnu/packages/video.scm (ffmpeg-4)[inputs]: New field.
2022-10-02 23:18:42 +02:00
bb3b810167
gnu: emacs-scratch-el: Update source and homepage.
...
* gnu/packages/emacs-xyz.scm (emacs-scratch-el)[source, homepage]: Update URL.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 15:40:17 +03:00
6fc185bc79
gnu: pantalaimon: Update to 0.10.5.
...
* gnu/packages/matrix.scm (pantalaimon): Update to 0.10.5.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 15:34:40 +03:00
d37f4f4ac7
gnu: python-matrix-nio: Update to 0.20.0.
...
* gnu/packages/matrix.scm (python-matrix-nio): Update to 0.20.0.
[native-inputs]: Add python-pytest-asyncio.
[propagated-inputs]: Changed python-jsonschema to python-jsonschema-next.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 15:34:38 +03:00
357bd133d8
gnu: python-aiohttp-socks: Update to 0.7.1.
...
* gnu/packages/python-web.scm (python-aiohttp-socks): Update to 0.7.1.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 15:34:36 +03:00
6448abe39a
gnu: python-socks: Update to 2.0.3.
...
* gnu/packages/python-web.scm (python-socks): Update to 2.0.3.
[arguments]<#:phases>: Remove trailing #t.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 15:34:30 +03:00
5bd048debf
gnu: Add go-1.19.
...
* gnu/packages/golang (go-1.19,go-std-1.19): New variables.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 15:23:07 +03:00
f44ba4a1ad
gnu: Add go-1.18.
...
* gnu/packages/golang (go-1.18,go-std-1.18): New variables.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 15:22:53 +03:00
2ac5da4b5a
gnu: Add ghc-9.0.
...
* gnu/packages/haskell.scm (ghc-9.0): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 15:16:18 +03:00
ae22181374
gnu: csound: Update to 6.16.2.
...
* gnu/packages/audio.scm (csound): Update to 6.16.2.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 14:54:21 +03:00
77bcdb7439
gnu: units: Update to 2.22.
...
* gnu/packages/maths.scm (units): Update to 2.22.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 14:36:23 +03:00
1df3af9bdf
gnu: neovim: Update to 0.8.0.
...
* gnu/packages/vim.scm (neovim): Update to 0.8.0.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 14:31:45 +03:00
09e5f9e38e
gnu: libvterm: Update to 0.3.0.
...
* gnu/packages/terminals.scm (libvterm): Update to 0.3.0.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 14:31:41 +03:00
78176e3a81
gnu: ungoogled-chromium: Update to 106.0.5249.91-1.
...
* gnu/packages/chromium.scm (%chromium-version): Set to 106.0.5249.91.
(%ungoogled-origin, ungoogled-chromium): Update hashes.
2022-10-01 23:13:13 +02:00
821cd5651a
gnu: exercism: Remove input labels.
...
* gnu/packages/education.scm (exercism)[inputs]: Remove input labels.
2022-10-01 23:48:02 +03:00
04516a7adf
gnu: exercism: Update home-page.
...
* gnu/packages/education.scm (exercism)[home-page]: Follow redirect.
2022-10-01 23:47:06 +03:00
4b5ac6b226
gnu: exercism: Install shell completions.
...
* gnu/packages/education.scm (exercism)[arguments]: Add a phase to build
and install shell completions.
2022-10-01 23:46:12 +03:00
Maxim Cournoyer
Ludovic Courtès
Nicolas Goaziou
Timotej Lazar
Sergey Trofimov
Felix Lechner
Brian Kubisiak
Liliana Marie Prikler
Tanguy Le Carrour
itd
Brian Cully
Fredrik Salomonsson
Lu Hui
Paul A. Patience
Wiktor Żelazny
(
Christopher Baines
Michael Rohleder
David Thompson
Ricardo Wurmus
Efraim Flashner
Leo Famulari
Sharlatan Hellseher
Alexey Abramov
Jonathan Brielmaier
Zzull
( via Guix-patches via
jgart
kiasoc5
Greg Hogan
Giovanni Biscuolo
Hilton Chain
Fulbert
Mike Swanson
ギャラ
Marius Bakke