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Author SHA1 Message Date
Vagrant Cascadian de0a3b578e
gnu: python-ueberzug: Fix typo. 
* gnu/packages/python-xyz.scm (python-ueberzug)[description]: Use "draws"
  instead of "allows to draw".
 2021-11-18 14:19:59 -08:00
Vagrant Cascadian 6fc80d9d4c
gnu: r-msfeatures: Fix typos. 
* gnu/packages/bioconductor.scm (r-msfeatures)[description]: Switch from
  "allows to" to "can be used" and from "allows to aggregate" to "allows
  aggregating".
 2021-11-18 14:19:54 -08:00
Julien Lepiller b1acfb676a
gnu: ocaml-ssl: Update to 0.5.10. 
* gnu/packages/ocaml.scm (ocaml-ssl): Update to 0.5.10.
 2021-11-18 23:17:08 +01:00
Efraim Flashner dcc4028c0e
gnu: irrlicht: Update home-page. 
* gnu/packages/games.scm (irrlicht)[home-page]: Update to new home-page.
 2021-11-18 21:13:23 +02:00
Ricardo Wurmus 93b2ce1197
gnu: r-tximeta: Update to 1.12.3. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.12.3.
 2021-11-18 13:18:01 +00:00
Ricardo Wurmus 6a5e5bb9e2
gnu: r-biodb: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.2.1.
 2021-11-18 13:18:01 +00:00
Ricardo Wurmus 13f8140290
gnu: r-chromstar: Update to 1.20.2. 
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.20.2.
 2021-11-18 13:18:00 +00:00
Ricardo Wurmus 34d17d5f62
gnu: r-scran: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.22.1.
 2021-11-18 13:18:00 +00:00
Ricardo Wurmus 0f72bdada5
gnu: r-hdf5array: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.22.1.
 2021-11-18 13:18:00 +00:00
Ricardo Wurmus ddb9d228b4
gnu: r-s4vectors: Update to 0.32.2. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.2.
 2021-11-18 13:18:00 +00:00
Ricardo Wurmus ef5bbc3416
gnu: r-biocset: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.8.1.
 2021-11-18 13:18:00 +00:00
Ricardo Wurmus 3cfeeace83
gnu: r-biocpkgtools: Update to 1.12.2. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.12.2.
 2021-11-18 13:17:59 +00:00
Ricardo Wurmus 6350413325
gnu: r-mixomics: Update to 6.18.0. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.18.0.
 2021-11-18 13:17:59 +00:00
Ricardo Wurmus a03c84244d
gnu: r-rsubread: Update to 2.8.1. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.8.1.
 2021-11-18 13:17:59 +00:00
Ricardo Wurmus d30d9c6001
gnu: r-geoquery: Update to 2.62.1. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.62.1.
[propagated-inputs]: Add r-r-utils.
 2021-11-18 13:17:59 +00:00
Ricardo Wurmus f4b108d872
gnu: r-icobra: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.22.1.
 2021-11-18 13:17:58 +00:00
Ricardo Wurmus 7e9a13d789
gnu: r-ggtree: Update to 3.2.1. 
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.2.1.
 2021-11-18 13:17:58 +00:00
Ricardo Wurmus e52eb93765
gnu: r-treeio: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.18.1.
 2021-11-18 13:17:58 +00:00
Ricardo Wurmus 34ba8b256b
gnu: r-systempiper: Update to 2.0.1. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.1.
 2021-11-18 13:17:58 +00:00
Ricardo Wurmus 6b1375d3af
gnu: r-msnbase: Update to 2.20.1. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.1.
 2021-11-18 13:17:58 +00:00
Ricardo Wurmus f917fa4e50
gnu: r-ensembldb: Update to 2.18.2. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.2.
 2021-11-18 13:17:57 +00:00
Ricardo Wurmus 30038c5738
gnu: r-chipseeker: Update to 1.30.2. 
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.30.2.
 2021-11-18 13:17:57 +00:00
Ricardo Wurmus 443ed83bc3
gnu: r-annotationdbi: Update to 1.56.2. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.56.2.
 2021-11-18 13:17:57 +00:00
Nicolas Goaziou 039c3848c3
gnu: wireshark: Update to 3.4.10. 
* gnu/packages/networking.scm (wireshark): Update to 3.4.10.
 2021-11-18 09:18:41 +01:00
Nicolas Goaziou f4aa543f74
gnu: emacs-elfeed-score: Update to 1.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-elfeed-score): Update to 1.2.0.
 2021-11-18 09:13:22 +01:00
zimoun 7537ec816f
gnu: coq-stdpp: Adjust '#:make-flags'. 
* gnu/packages/coq.scm (coq-stdpp)[arguments]<#:make-flags>: Set install
destination.
<#:phases>: Remove replace 'install.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2021-11-18 04:30:41 +01:00
zimoun 4423caece6
gnu: coq-equations: Adjust '#:make-flags'. 
* gnu/packages/coq.scm (coq-equations)[arguments]<#:make-flags>: Set install
destination.
<#:phases>: Remove replace 'install.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2021-11-18 04:25:38 +01:00
zimoun 5d7d64ff85
gnu: coq-autosubst: Adjust '#:make-flags'. 
* gnu/packages/coq.scm (coq-autosubst)[arguments]<#:make-flags>: Set install
destination.
<#:phases>: Remove replace 'install.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2021-11-18 04:22:21 +01:00
zimoun 7b93c6d777
gnu: coq-mathcomp: Adjust '#:make-flags'. 
* gnu/packages/coq.scm (coq-mathcomp)[arguments]<#:make-flags>: Set install
destination.
<#:phases>: Remove replace 'install.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2021-11-18 04:08:08 +01:00
zimoun 2d60af4d6d
gnu: Add coq-semantics. 
* gnu/packages/coq.scm (coq-semantics): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2021-11-18 04:08:00 +01:00
Vagrant Cascadian e930d4a747
gnu: perl-tie-handle-offset: Fix typo. 
* gnu/packages/perl.scm (perl-tie-handle-offset)[description]: Fix "This
  module" typo.
 2021-11-17 17:46:13 -08:00
Vagrant Cascadian 67900b9555
gnu: perl-business-ismn: Fix typo. 
* gnu/packages/perl.scm (perl-business-ismn)[description]: Fix "This module"
  typo.
 2021-11-17 17:46:05 -08:00
Vagrant Cascadian e52032ac1d
gnu: perl-business-issn: Fix typo. 
* gnu/packages/perl.scm (perl-business-issn)[description]: Fix "This module"
  typo.
 2021-11-17 17:46:01 -08:00
Vagrant Cascadian f4f93b38aa
gnu: perl-business-isbn: Fix typo. 
* gnu/packages/perl.scm (perl-business-isbn)[description]: Fix "This module"
  typo.
 2021-11-17 17:45:53 -08:00
Vagrant Cascadian 8f6ac12fe4
gnu: perl-test-dir: Fix typo. 
* gnu/packages/perl-check.scm (perl-test-dir)[description]: Fix "This module"
  typo.
 2021-11-17 17:45:49 -08:00
Vagrant Cascadian e782bb901b
gnu: python-sgmllib3k: Fix typo. 
* gnu/packages/python-xyz.scm (python-sgmllib3k)[description]: Fix "This
  package" typo.
 2021-11-17 17:45:45 -08:00
Vagrant Cascadian fb1cd494d7
gnu: rust-fever-api-0.2: Fix typo. 
* gnu/packages/crates-io.scm (rust-fever-api-0.2)[description]: Fix "This
  package" typo.
 2021-11-17 17:45:38 -08:00
Vagrant Cascadian 747403aca5
gnu: perl-test-nowarnings: Fix typo. 
* gnu/packages/perl-check.scm (perl-test-nowarnings)[description]: Fix "This
  module" typo.
 2021-11-17 17:45:21 -08:00
Tobias Geerinckx-Rice 407594d21b
gnu: foo2zjs: Use archived home page. 
* gnu/packages/cups.scm (foo2zjs)[home-page]: Link to the Web Archive'd
URL.
 2021-11-18 01:12:21 +01:00
Tobias Geerinckx-Rice 90c524c94e
gnu: sg3-utils: Omit static library. 
* gnu/packages/scsi.scm (sg3-utils)[arguments]: Add "--disable-static"
to #:configure-flags.
 2021-11-18 01:12:15 +01:00
Tobias Geerinckx-Rice f41fbda9db
gnu: sg3-utils: Update to 1.47. 
* gnu/packages/scsi.scm (sg3-utils): Update to 1.47.
 2021-11-18 01:08:30 +01:00
Marius Bakke e3f70c947f
gnu: ungoogled-chromium: Update to 96.0.4664.45-0. 
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for M96.
(%chromium-version): Set to 96.0.4664.45.
(%ungoogled-origin, ungoogled-chromium): Update hashes.
 2021-11-17 23:57:52 +01:00
Marius Bakke b432cd1189
gnu: libtorrent-rasterbar: Update to 1.2.14. 
* gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 1.2.14.
[source](uri): Adjust tag name.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Adjust accordingly.  Override the check phase to fake the time
for one test, and disable another.
[native-inputs]: Add LIBFAKETIME.
 2021-11-17 23:57:52 +01:00
Foo Chuan Wei 94fbcf7b78
gnu: Add rcs-blame. 
* gnu/packages/version-control.scm (rcs-blame): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-17 23:05:59 +01:00
Foo Chuan Wei b737607c54
gnu: rcs: Install rcsfreeze. 
* gnu/packages/version-control.scm (rcs): Install rcsfreeze.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-17 23:05:58 +01:00
Josselin Poiret 7c4142628a
gnu: system: Improve location of some configuration warnings. 
* gnu/bootloader.scm (%warn-target-field-deprecation): Remove it.
* gnu/bootloader.scm (warn-target-field-deprecation): Use
define-with-syntax-properties.
* gnu/system.scm (ensure-setuid-program-list): Ditto.  Also rename the
'location' variable to 'properties'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-17 23:05:58 +01:00
Philip McGrath cb768f3860
gnu: tidy-html: Update to 5.8.0. 
* gnu/packages/web.scm (tidy-html): Update to 5.8.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-17 23:05:58 +01:00
Michael Rohleder 609066e996
gnu: xfce4-whiskermenu-plugin: Update to 2.6.1. 
* gnu/packages/xfce.scm (xfce4-whiskermenu-plugin): Update to 2.6.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-17 23:05:57 +01:00
Michael Rohleder 7fe5742e03
gnu: ristretto: Update to 0.12.0. 
* gnu/packages/xfce.scm (ristretto): Update to 0.12.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-17 23:05:57 +01:00
Michael Rohleder 538a755341
gnu: xfce4-cpugraph-plugin: Update to 1.2.5. 
* gnu/packages/xfce.scm (xfce4-cpugraph-plugin): Update to 1.2.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-17 23:05:57 +01:00
jgart 5a6af48408
gnu: shellcheck: Update to 0.8.0. 
* gnu/packages/haskell-apps.scm (shellcheck): Update to 0.8.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-17 23:05:57 +01:00
Xinglu Chen 77483d6b61
gnu: perl-inline-c: Patch paths to ‘make’. 
* gnu/packages/perl.scm (perl-inline-c)[arguments]<#:phases>{patch-paths}: New
  phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-17 23:05:57 +01:00
Alexey Abramov 4ace645506
services: docker: Add 'environment-variables' configuration field. 
* gnu/services/docker.scm (docker-configuration):  Add the field
(docker-shepherd-service): Pass the list of defined variables to
make-forkexec-constructor.
* doc/guix.texi (Miscellaneous Services): Update doc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-17 23:05:56 +01:00
Vagrant Cascadian 6bffa13040
gnu: perl-log-message: Fix typo. 
* gnu/packages/perl.scm (perl-log-message)[description]: Correctly use "lets
  you".
 2021-11-17 13:29:35 -08:00
Nicolas Goaziou ee98b30a69
gnu: emacs-eldev: Update to 0.10. 
* gnu/packages/emacs-xyz.scm (emacs-eldev): Update to 0.10.
[arguments]: Enable some tests, disable some others.  Remove #t at the end of phases.
 2021-11-17 22:12:26 +01:00
Vagrant Cascadian b066c9b03d
gnu: home: services: Fix typo. 
* gnu/home/services.scm (compute-on-first-login-script): Fix spelling of
  "appropriate".
 2021-11-17 12:55:24 -08:00
Ricardo Wurmus 30474f25d0
gnu: python-numcodecs: Unbundle c-blosc. 
* gnu/packages/python-xyz.scm (python-numcodecs)[source]: Add snippet to
remove bundled c-blosc sources and pre-built Cython files.
[arguments]: Add build phase 'disable-avx2 and 'unbundle; replace 'check phase
to run pytest; disable tests.
[inputs]: Add c-blosc, lz4, zlib, and zstd.
[native-inputs]: Add python-cython.
 2021-11-17 20:45:58 +00:00
Ricardo Wurmus 7850856591
gnu: c-blosc: Build with external libraries and without AVX2. 
* gnu/packages/compression.scm (c-blosc)[inputs]: Add lz4, snappy, zlib, and
zstd.
[arguments]: Disable building with AVX2 instructions; prefer our compression
packages over bundled sources.
 2021-11-17 20:45:54 +00:00
phodina 41c8ee1b50
gnu: font-adobe-source-code-pro: Update to 2.032R-ro-1.052R-it-1.012R-VAR. 
* gnu/packages/fonts (font-adobe-source-code-pro): Update to
2.032R-ro-1.052R-it-1.012R-VAR.
[commit]: Adjust version rewriting regexp accordingly.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2021-11-17 18:11:40 +01:00
Vivien Kraus 948137b62a
gnu: Add emacs-vala-mode. 
* gnu/packages/emacs-xyz (emacs-vala-mode): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2021-11-17 18:01:19 +01:00
Efraim Flashner 99084abd80
gnu: xfig: Update to 3.2.8b. 
* gnu/packages/xfig.scm (xfig): Update to 3.2.8b.
[native-inputs]: Add ghostscript.
 2021-11-17 17:48:18 +02:00
Nicolas Goaziou c3931a5454
gnu: fet: Update to 6.2.2. 
* gnu/packages/education.scm (fet): Update to 6.2.2.
 2021-11-17 15:06:30 +01:00
Nicolas Goaziou 8ae8c327dd
gnu: emacs-csharp-mode: Update to 1.1.0. 
* gnu/packages/emacs-xyz.scm (emacs-csharp-mode): Update to 1.1.0.
 2021-11-17 15:00:53 +01:00
Nicolas Goaziou d14f006355
gnu: emacs-vertico: Update to 0.16. 
* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 0.16.
 2021-11-17 14:59:33 +01:00
Nicolas Goaziou 9f6f05aa7b
gnu: emacs-corfu: Update to 0.15. 
* gnu/packages/emacs-xyz.scm (emacs-corfu): Update to 0.15.
 2021-11-17 14:54:40 +01:00
Ricardo Wurmus aad93806ac
gnu: python-hnswlib: Disable native optimizations. 
* gnu/packages/python-xyz.scm (python-hnswlib)[arguments]: Add build phase
'disable-native-optimization.
 2021-11-17 11:00:02 +00:00
Pierre Neidhardt 4eb7ec53dd
gnu: sbcl-cl-tld: Update to 20211117. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-tld): Update to 20211117.
 2021-11-17 09:36:33 +01:00
Efraim Flashner 62e707d67c
gnu: julia: Update to 1.6.3. 
* gnu/packages/julia.scm (julia): Update to 1.6.3.
 2021-11-17 08:45:22 +02:00
Tobias Geerinckx-Rice 02a67810e5
gnu: git: Update to 2.34.0. 
* gnu/packages/version-control.scm (git): Update to 2.34.0.
 2021-11-17 00:45:48 +01:00
jgart 6ed2c5e2a4
gnu: fennel: Update to 1.0.0. 
* gnu/packages/lua.scm (fennel): Update to 1.0.0.
[origin]: Remove unneeded snippet.
[arguments]: Remove custom 'patch-lua-calls, 'install-manpage phases.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-16 21:04:58 +02:00
Jelle Licht eb4edd7fde
gnu: emacs-flymake-kondor: Update to 0.1.1-0.389b513. 
* gnu/packages/emacs-xyz.scm (emacs-flymake-kondor): Update to 0.1.1-0.389b513.
[propagated-inputs]: Remove emacs-flymake-quickdef.
 2021-11-16 17:36:20 +01:00
Ludovic Courtès 7dce1df34b
gnu: Add texlive-xifthen. 
* gnu/packages/tex.scm (texlive-xifthen): New variable.
 2021-11-16 16:59:52 +01:00
Greg Hogan 912cb917b8
gnu: aws-sdk-cpp: Enable text-to-speech library. 
* gnu/packages/cpp.scm (aws-sdk-cpp)[inputs]: Add pulseaudio dependency
so that text-to-speech library is included in the build.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-16 16:59:52 +01:00
Greg Hogan 14f540593b
gnu: aws-checksums: Replace patch. 
* gnu/packages/c.scm (aws-checksums): Replace patch.
[arguments]: Fix CMAKE_PREFIX_PATH.
[source]: Remove patch.
* gnu/packages/patches/aws-checksums-cmake-prefix.patch:
Delete file.
* gnu/local.mk: Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-16 16:59:52 +01:00
Greg Hogan 963ebbc62c
gnu: aws-c-event-stream: Replace patch. 
* gnu/packages/c.scm (aws-c-event-stream): Replace patch.
[arguments]: Fix CMAKE_PREFIX_PATH.
[source]: Remove patch.
* gnu/packages/patches/aws-c-event-stream-cmake-prefix.patch:
Delete file.
* gnu/local.mk: Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-16 16:59:52 +01:00
Greg Hogan c769b8c2b5
gnu: aws-sdk-cpp: Update to 1.9.136. 
* gnu/packages/cpp.scm (aws-sdk-cpp): Update to 1.9.136.
[arguments]: Fix CMAKE_PREFIX_PATH.
[source]: Remove patches.
* gnu/packages/patches/aws-sdk-cpp-cmake-prefix.patch,
gnu/packages/patches/aws-sdk-cpp-disable-network-tests.patch,
gnu/packages/patches/aws-sdk-cpp-disable-werror.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-16 16:59:51 +01:00
Greg Hogan 37db6db284
gnu: aws-crt-cpp: Update to 0.17.1. 
* gnu/packages/c.scm (aws-crt-cpp): Update to 0.17.1.
[arguments]: Fix CMAKE_PREFIX_PATH, disable network tests.
[source]: Remove patches.
* gnu/packages/patches/aws-crt-cpp-cmake-prefix.patch,
gnu/packages/patches/aws-crt-cpp-disable-networking-tests.patch:
Delete files.
* gnu/local.mk: Remove them.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-16 16:59:51 +01:00
Greg Hogan d5c9f52a37
gnu: aws-c-mqtt: Replace patch. 
* gnu/packages/c.scm (aws-c-mqtt): Replace patch.
[arguments]: Fix CMAKE_PREFIX_PATH.
[source]: Remove patch.
* gnu/packages/patches/aws-c-mqtt-cmake-prefix.patch: Delete file.
* gnu/local.mk: Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-16 16:59:51 +01:00
Greg Hogan 2d61354788
gnu: aws-c-s3: Update to 0.1.26. 
* gnu/packages/c.scm (aws-c-s3): Update to 0.1.26.
[arguments]: Fix CMAKE_PREFIX_PATH, disable network tests.
[source]: Remove patches.
* gnu/packages/patches/aws-c-s3-cmake-prefix.patch,
gnu/packages/patches/aws-c-s3-disable-networking-tests.patch:
Delete files.
* gnu/local.mk: Remove them.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-16 16:59:51 +01:00
Greg Hogan 05be89ac5b
gnu: aws-c-auth: Update to 0.6.4. 
* gnu/packages/c.scm (aws-c-auth): Update to 0.6.4.
[arguments]: Fix CMAKE_PREFIX_PATH, disable network tests.
[source]: Add and remove patches.
* gnu/packages/patches/aws-c-auth-install-private-headers.patch:
New file.
* gnu/packages/patches/aws-c-auth-cmake-prefix.patch,
gnu/packages/patches/aws-c-auth-disable-networking-tests.patch:
Delete files.
* gnu/local.mk: Add and remove them.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-16 16:59:51 +01:00
Greg Hogan cff8a12a0a
gnu: aws-c-compression: Update to 0.2.14. 
* gnu/packages/c.scm (aws-c-compression): Update to 0.2.14.
[arguments]: Fix CMAKE_PREFIX_PATH.
[source]: Remove patch.
* gnu/packages/patches/aws-c-compression-cmake-prefix.patch:
Delete file.
* gnu/local.mk: Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-16 16:59:51 +01:00
Greg Hogan 1a0ed46097
gnu: aws-c-http: Update to 0.6.7. 
* gnu/packages/c.scm (aws-c-http): Update to 0.6.7.
[arguments]: Fix CMAKE_PREFIX_PATH, disable network tests.
[source]: Remove patches.
* gnu/packages/patches/aws-c-http-cmake-prefix.patch,
gnu/packages/patches/aws-c-http-disable-networking-tests.patch:
Delete files.
* gnu/local.mk: Remove them.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-16 16:59:50 +01:00
Greg Hogan 4ff5cd6b06
gnu: aws-c-cal: Update to 0.5.12. 
* gnu/packages/c.scm (aws-c-cal): Update to 0.5.12.
[arguments]: Fix CMAKE_PREFIX_PATH.
[source]: Remove patch.
* gnu/packages/patches/aws-c-cal-cmake-prefix.patch: Delete file.
* gnu/local.mk: Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-16 16:59:50 +01:00
Greg Hogan 2a32dedfbf
gnu: aws-c-io: Update to 0.10.9. 
* gnu/packages/c.scm (aws-c-io): Update to 0.10.9.
[arguments]: Fix CMAKE_PREFIX_PATH, disable network tests.
[source]: Remove patches.
* gnu/packages/patches/aws-c-io-cmake-prefix.patch,
gnu/packages/patches/aws-c-io-disable-networking-tests.patch:
Delete files.
* gnu/local.mk: Remove them.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-16 16:59:50 +01:00
Greg Hogan 5715a07af3
gnu: aws-c-common: Update to 0.6.11. 
* gnu/packages/c.scm (aws-c-common): Update to 0.6.11.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-16 16:59:50 +01:00
Greg Hogan cf48bf8607
gnu: s2n: Update to 1.1.0. 
* gnu/packages/tls.scm (s2n): Update to 1.1.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-16 16:59:50 +01:00
Ludovic Courtès 206f2693fd
gnu: guix: Update to 9bbbac6. 
* gnu/packages/package-management.scm (guix): Update to 9bbbac6.
 2021-11-16 16:59:50 +01:00
Julien Lepiller 0a9a00b34c
gnu: pplacer: Fix build. 
* gnu/packages/bioinformatics.scm (pplacer): Add missing input.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-16 15:43:51 +02:00
Julien Lepiller fd9b7f8376
gnu: ocaml4.07-odoc: Fix inputs. 
* gnu/packages/ocaml.scm (ocaml4.07-odoc): Fix inputs.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-16 15:43:51 +02:00
Julien Lepiller 6347ac8e40
gnu: Add ocaml4.07-bisect-ppx. 
* gnu/packages/ocaml.scm (ocaml4.07-bisect-ppx): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-16 15:43:51 +02:00
Julien Lepiller c10ba562be
gnu: ocaml-lwt: Remove unneeded input. 
* gnu/packages/ocaml.scm (ocaml-lwt)[native-inputs]: Remove
ocaml-bisect-ppx.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-16 15:43:51 +02:00
Julien Lepiller b531ba4304
gnu: Add ocaml4.07-alcotest. 
* gnu/packages/ocaml.scm (ocaml4.07-alcotest): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-16 15:43:51 +02:00
Julien Lepiller 8000fc4fa0
gnu: Add ocaml4.07-re. 
* gnu/packages/ocaml.scm (ocaml4.07-re): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-16 15:43:51 +02:00
Ludovic Courtès 9bbbac6783
gnu: Add texlive-latex-textpos. 
* gnu/packages/tex.scm (texlive-latex-textpos): New variable.
 2021-11-16 14:38:02 +01:00
Ludovic Courtès e699eb3bcc
gnu: Add texlive-translator. 
* gnu/packages/tex.scm (texlive-translator): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2021-11-16 14:38:02 +01:00
Ludovic Courtès c322d97832
home: services: bash: Emit 'extra-content' first again. 
Fixes a regression introduced in
4b96998292 that would less to a
'tests/guix-home.sh' failure.

* gnu/home/services/shells.scm (add-bash-configuration)[file-if-not-empty]:
Move EXTRA-CONTENT first.
 2021-11-16 14:38:01 +01:00
Ludovic Courtès e5d8302b2c
home: services: Fix typo. 
Reinstates 4dcec60fa6, minus the
regression it introduced.

* gnu/home/services.scm (compute-on-first-login-script): Use
'program-file', not 'gexp->script'.
 2021-11-16 14:37:34 +01:00
Vivien Kraus b4b2bbf4fb
services: openssh: Collect all keys for all users. 
Fixes <https://issues.guix.gnu.org/51487>

* gnu/services/ssh.scm (extend-openssh-authorized-keys): ensure that no key is forgotten.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-16 14:34:28 +01:00
Efraim Flashner b2f8186590
Revert "home-services: Demonadify 'on-first-login' handling." 
This commit breaks building guix home
guix home: error: reference to invalid output 'out' of derivation \
    '/gnu/store/86zc4rijsswmfqnaq8rwixcxjl2zyl1c-on-first-login.drv'

This reverts commit 4dcec60fa6.
 2021-11-16 15:31:07 +02:00
Jean-Baptiste Volatier 546f8537aa
gnu: Add julia-sundials-jull 
* gnu/packages/julia-jll.scm (julia-sundials-jll): New variable.
* gnu/packages/maths.scm (sundials-julia): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-16 15:16:44 +02:00
Efraim Flashner e9a5fb7ad9
Revert "gnu: Add cl-https-everywhere." 
With thanks to jlicht on IRC:
sbcl-package->cl-source-package assumes all inputs are packages
which isn't the case here.

This reverts commit e31d48d8db.
 2021-11-16 15:06:54 +02:00
Efraim Flashner 11446953ba
gnu: julia-pycall: Update to 1.92.5. 
* gnu/packages/julia-xyz.scm (julia-pycall): Update to 1.92.5.
 2021-11-16 14:40:03 +02:00
Jean-Baptiste Volatier 3af351a7de
build-system/julia: Enable Julia Pkg to find installed packages. 
Julia's built-in package manager (Pkg) looks for packages in
JULIA_DEPOT_PATH/packages/PACKAGENAME/XXXX, where XXXX is a string
encoding package UUID and SHA1 of files.  The link-depot phase creates
a link at the correct location to allow Pkg to find packages that were
already installed by Guix.

* guix/build/julia-build-system.scm (link-depot): New phase.
(%package-path): Modified package path from packages/ to loadpath/.
(project.toml->uuid): New procedure, retrive package uuid from TOML file.
(precompile, check): Adjust to the change in paths.
(%standard-phases): Add link-depot phase.
(julia-build): Add julia-package-uuid keyword.
* guix/build-system/julia.scm (julia-build): Also use the
julia-package-uuid keyword.
* gnu/packages/julia-jll.scm (julia-bzip2-jll, julia-cairo-jll,
julia-compilersupportlibraries-jll, julia-expat-jll, julia-ffmpeg-jll,
julia-fontconfig-jll, julia-freetype2-jll, julia-fribidi-jll,
julia-gettext-jll, julia-glib-jll, julia-gr-jll, julia-gumbo-jll,
julia-imagemagick-jll, julia-jllwrappers-jll, julia-jpegturbo-jll,
julia-lame-jll, julia-libass-jll, julia-libfdk-aac-jll,
julia-libffi-jll, julia-libgcrypt-jll, julia-libglvnd-jll,
julia-libgpg-error-jll, juli-libiconv-jll, julia-libmount-jll,
julia-libpng-jll, julia-libsass-jll, julia-libtiff-jll,
julia-libuuid-jll, julia-libvorbis-jll, julia-lzo-jll,
julia-mbedtls-jll, julia-ogg-jll, julia-openspecfun-jll,
julia-openssl-jll, julia-opus-jll, julia-pcre-jll, julia-pixman-jll,
julia-qt5base-jll, julia-wayland-jll, julia-wayland-protocols-jll,
julia-x264-jll, julia-x265-jll, julia-xkbcommon-jll, julia-xml2-jll,
julia-xorg-libpthread-stubs-jll, julia-xorg-libx11-jll,
julia-xorg-libxau-jll, julia-xorg-libxcb-jll, julia-xorg-libxcursor-jll,
julia-xorg-libxdmcp-jll, julia-xorg-libxext-jll,
julia-xorg-libxfixes-jll, julia-xorg-libxi-jll,
julia-xorg-libxinerama-jll, julia-xorg-libxkbfile-jll,
julia-xorg-libxrandr-jll, julia-xorg-libxrender-jll,
julia-xorg-xcb-util-jll, julia-xorg-xcb-util-keysyms-jll,
julia-xorg-xcb-util-renderutil-jll, julia-xorg-xcb-util-wm-jll,
julia-xorg-xkbcomp-jll, julia-xorg-xkeyboard-config-jll,
julia-xorg-xtrans-jll, julia-xslt-jll, julia-zlib-jll, julia-zstd-jll)
[argument]: Adjust the order of the phases to the change in the
julia-build-system.
* gnu/packages/julia-xyz.scm (julia-bufferedstreams, julia-calculus,
julia-dataframes, julia-datavalues, julia-distances, julia-documenter,
julia-dualnumbers, julia-ellipsisnotation, julia-expronicon,
julia-fileio, julia-fixedpointnumbers, julia-functionwrappers,
julia-fuzzycompletions, julia-genericlinearalgebra, julia-genericschur,
julia-geometrybasics, julia-imagemagick, julia-infinity,
julia-matrixfactorizations, julia-media, julia-missings, julia-nnlib,
julia-optimtestproblems, julia-orderedcollections, julia-prettytables,
julia-pycall, julia-quadmath, julia-safetests, julia-stackviews)
[arguments]: Correct paths to reflect change of %package-path modify
order of phases as link-depot needs to run on an unmodified src
directory add package-name-uuid keyword argument to packages without
Project.toml file.
* gnu/packages/julia.scm (julia)[native-search-paths]: Correct paths to
reflect change of %package-path modify order of phases as link-depot
needs to run on an unmodified src directory.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-16 14:39:51 +02:00
Pierre Neidhardt e31d48d8db
gnu: Add cl-https-everywhere. 
* gnu/packages/lisp-xyz.scm (cl-https-everywhere, sbcl-cl-https-everywhere):
New variables.
 2021-11-16 12:51:45 +01:00
Pierre Neidhardt 2d55463053
gnu: Add vernacular. 
* gnu/packages/lisp-xyz.scm (cl-vernacular, sbcl-vernacular): New variables.
 2021-11-16 12:51:45 +01:00
Pierre Neidhardt f1dd327996
gnu: Add fxml. 
* gnu/packages/lisp-xyz.scm (cl-fxml, sbcl-fxml): New variables.
 2021-11-16 12:51:45 +01:00
Pierre Neidhardt 3ddfe4c1a0
gnu: Add xpath. 
* gnu/packages/lisp-xyz.scm (cl-xpath, sbcl-xpath): New variables.
 2021-11-16 12:51:45 +01:00
Pierre Neidhardt e37bb39971
gnu: Add overlord. 
* gnu/packages/lisp-xyz.scm (cl-overlord, sbcl-overlord): New variables.
 2021-11-16 12:51:45 +01:00
Pierre Neidhardt 3f6953b54e
gnu: Add cxml-rng. 
* gnu/packages/lisp-xyz.scm (cl-cxml-rng, sbcl-cxml-rng): New variables.
 2021-11-16 12:51:45 +01:00
Pierre Neidhardt d0c3efb78a
gnu: Add bit-smasher. 
* gnu/packages/lisp-xyz.scm (cl-bit-smasher, ecl-bit-smasher, sbcl-bit-smasher): New variables.
 2021-11-16 12:51:44 +01:00
Pierre Neidhardt de28e45e0f
gnu: Add cl-base58. 
* gnu/packages/lisp-xyz.scm (cl-base58, ecl-cl-base58, sbcl-cl-base58): New variables.
 2021-11-16 12:51:44 +01:00
Pierre Neidhardt 6366aaf7cc
gnu: Add exit-hooks. 
* gnu/packages/lisp-xyz.scm (cl-exit-hooks, ecl-exit-hooks, sbcl-exit-hooks):
New variables.
 2021-11-16 12:47:00 +01:00
Pierre Neidhardt 462bb6cca8
gnu: Add cl-strftime. 
* gnu/packages/lisp-xyz.scm (cl-strftime, ecl-cl-strftime, sbcl-cl-strftime):
New variables.
 2021-11-16 12:46:59 +01:00
Pierre Neidhardt 342f3de742
gnu: Add sbcl-cl-tld. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-tld): New variable.
 2021-11-16 12:46:59 +01:00
Pierre Neidhardt 66cfc6ad12
gnu: sbcl-cl-webkit: Update to 3.2.0. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-webkit): Update to 3.2.0.
 2021-11-16 12:46:59 +01:00
Pierre Neidhardt 95a0f249ab
gnu: sbcl-cmd: Update to 20211009. 
* gnu/packages/lisp-xyz.scm (sbcl-cmd): Update to 20211009.
 2021-11-16 12:46:59 +01:00
Tobias Geerinckx-Rice 122396075f
services: cups: Update default timeouts. 
Upstream raised these back in 2019 with CUPS 2.3.0.

* gnu/services/cups.scm (<cups-configuration>): Raise default
‘multiple-operation-timeout’ and ‘timeout’ from 300 to 900 seconds.
* doc/guix.texi (Printing Services): Adjust accordingly.
 2021-11-16 01:15:04 +01:00
Christopher Baines db5907138c
gnu: guix-build-coordinator: Update to 0-37.200ffe7. 
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-37.200ffe7.
 2021-11-15 21:49:21 +00:00
Jelle Licht 63915955e2
gnu: libuv-for-node: Update to 1.42.0. 
* gnu/packages/libevent.scm (libuv-for-node): Update to 1.42.0.
 2021-11-15 22:43:24 +01:00
Jelle Licht f3cd70ff8c
gnu: node-lts: Update to 14.18.1 [security fixes]. 
* gnu/packages/node.scm (node-lts): Update to 14.18.1.
[native-inputs]: Replace c-ares with c-ares-for-node.
[inputs]: Replace c-ares with c-ares-for-node.

Includes fixes for CVE-2021-22918, CVE-2021-22930, CVE-2021-22931,
CVE-2021-22939, and CVE-2021-22940.
 2021-11-15 22:43:24 +01:00
Jelle Licht cae7c3f389
gnu: llhttp-bootstrap: Update to 2.1.4 [security-fixes]. 
* gnu/packages/node.scm (llhttp-bootstrap): Update to 2.1.4.

Includes fixes for CVE-2021-22959 and CVE-2021-22960.
 2021-11-15 22:43:23 +01:00
Jelle Licht ecbf59abad
gnu: Add c-ares-for-node. 
* gnu/packages/adns.scm (c-ares-for-node): New variable.

Co-authored-by: Marius Bakke <marius@gnu.org>
 2021-11-15 22:43:23 +01:00
Jelle Licht a69076e792
gnu: node: Add cpe-name. 
* gnu/packages/node.scm (node)[properties]: Add cpe-name.
 2021-11-15 22:43:23 +01:00
Lenny Händler 847f2ae859
gnu: taskwarrior: Update to 2.6.1. 
* gnu/packages/task-management.scm (taskwarrior): Update to 2.6.1.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-15 22:26:50 +01:00
Nicolas Goaziou ae14076578
gnu: emacs-helm: Update to 3.8.1. 
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.8.1.
 2021-11-15 21:43:39 +01:00
Nicolas Goaziou 1a925d3af7
gnu: pdfarranger: Update to 1.8.0. 
* gnu/packages/pdf.scm (pdfarranger): Update to 1.8.0.
 2021-11-15 21:41:26 +01:00
Jean-Baptiste Volatier a1a7e2b951
gnu: julia: Fix llvm-julia version. 
LLVM bundled in the binary julia distributed by upstream has its
version with a "jl" suffix. The llvm-julia package does not have
this suffix, which causes some packages (e. g. LLVM.jl) to fail to
load.

LLVM.jl does this in order to be sure that it is loading a LLVM as
patched for julia and not LLVM from the distribution which will
lack the correct patches on distribs other than GUIX.

I guess there might be other packages that rely on this, so we
should fix our llvm-julia package.

* gnu/packages/julia.scm (llvm)
[source]: Add missing upstream patch
[arguments]: Add configure-flag to set a "jl" suffix to llvm version
(julia)[arguments]: Symlink llvm to llvm-11jl.so

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-15 22:38:09 +02:00
Nicolas Goaziou 2b56e477f3
gnu: emacs-consult: Update to 0.13. 
* gnu/packages/emacs-xyz.scm (emacs-consult): Update to 0.13.
 2021-11-15 21:35:33 +01:00
Nicolas Goaziou 9784e14817
gnu: emacs-exwm: Update to 0.26. 
* gnu/packages/emacs-xyz.scm (emacs-exwm): Update to 0.26.
 2021-11-15 21:33:51 +01:00
Nicolas Goaziou d24333c29c
gnu: emacs-rustic: Update to 2.1. 
* gnu/packages/emacs-xyz.scm (emacs-rustic): Update to 2.1.
 2021-11-15 21:31:38 +01:00
Nicolas Goaziou 563354db48
gnu: emacs-marginalia: Update to 0.10. 
* gnu/packages/emacs-xyz.scm (emacs-marginalia): Update to 0.10.
 2021-11-15 21:29:47 +01:00
Nicolas Goaziou fb8e5f530e
gnu: borgmatic: Fix typo in description. 
* gnu/packages/backup.scm (borgmatic): Fix typo, "software" being a mass noun.
 2021-11-15 21:17:21 +01:00
Ludovic Courtès 21332f3b8c
gnu: hpcguix-web: Update to 0.2.0. 
* gnu/packages/web.scm (hpcguix-web): Update to 0.2.0.
[arguments]: In 'wrap-program' phase, add guile-zlib to DEPS.
[native-inputs]: Add GUILE.
[inputs]: Add GUILE-ZLIB, GUILE-COMMONMARK, and GUILE-JSON.
[propagated-inputs]: Remove.  These were pointless.
* gnu/services/web.scm (<hpcguix-web-configuration>)[address, port]: New
fields.
* doc/guix.texi (Web Services): Document them.
* gnu/tests/web.scm (%hpcguix-web-os): Add 'address'.
 2021-11-15 17:55:50 +01:00
Ludovic Courtès 782e9975dc
gnu: python-pytorch: Update to 1.10.0. 
* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.10.0.
* gnu/packages/patches/python-pytorch-system-libraries.patch: Adjust.
 2021-11-15 17:55:50 +01:00
Ryan Prior 1a501646f5
gnu: Add python-minikanren. 
* gnu/packages/python-xyz.scm (python-minikanren): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-15 17:55:50 +01:00
Ryan Prior f661fa8e8f
gnu: Add python-etuples. 
* gnu/packages/python-xyz.scm (python-etuples): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-15 17:55:50 +01:00
Ryan Prior 37e6f02880
gnu: Add python-cons. 
* gnu/packages/python-xyz.scm (python-cons): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-15 17:55:50 +01:00
Ryan Prior 9373007321
gnu: Add python-logical-unification. 
* gnu/packages/python-xyz.scm (python-logical-unification): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-15 17:55:50 +01:00
Ryan Prior 0ace339cbe
gnu: Add python-multipledispatch. 
* gnu/packages/python-xyz.scm (python-multipledispatch): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-15 17:55:49 +01:00
Ludovic Courtès 2a32c99b38
gnu: clang-toolchain: Add libomp. 
* gnu/packages/llvm.scm (make-clang-toolchain)[inputs]: Add LIBOMP.
 2021-11-15 17:55:49 +01:00
Vinicius Monego 3288d6bf76
gnu: Add python-rtree. 
* gnu/packages/geo.scm (python-rtree): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-11-15 17:49:24 +01:00
Foo Chuan Wei 386db367c9
gnu: Add python-ta-lib. 
* gnu/packages/finance.scm (python-ta-lib): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-11-15 17:40:30 +01:00
Foo Chuan Wei f50c9b45ad
gnu: Add cl-chemboy. 
* gnu/packages/lisp-xyz.scm (cl-chemboy, ecl-chemboy, sbcl-chemboy):
  New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-11-15 17:38:14 +01:00
Foo Chuan Wei 8e18eb8cdf
gnu: Add cl-chemical-compounds. 
* gnu/packages/lisp-xyz.scm (cl-chemical-compounds,
  ecl-chemical-compounds, sbcl-chemical-compounds): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-11-15 17:32:36 +01:00
Foo Chuan Wei 333e1b3ce6
gnu: Add cl-periodic-table. 
* gnu/packages/lisp-xyz.scm (cl-periodic-table, ecl-periodic-table,
  sbcl-periodic-table): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-11-15 17:26:58 +01:00
Ricardo Wurmus 616bcc9c0b
gnu: python-scanpy: Run tests conditionally. 
* gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Respect TESTS?
argument.
 2021-11-15 15:21:06 +00:00
Julien Lepiller 46432cceeb
gnu: guile-netlink: Update to 1.1. 
* gnu/packages/guile-xyz.scm (guile-netlink): Update to 1.1.
 2021-11-15 16:05:19 +01:00
Arun Isaac f2ad33bc39
gnu: python-pingouin: Update to 0.5.0. 
* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.0.
 2021-11-15 17:19:52 +05:30
Ricardo Wurmus 078934bdd4
gnu: python-scipy: Run tests conditionally. 
* gnu/packages/python-science.scm (python-scipy)[arguments]: Respect TESTS? in
'CHECK phase.
 2021-11-15 11:46:23 +00:00
Ricardo Wurmus 373d2099c9
gnu: Add python-hnswlib. 
* gnu/packages/python-xyz.scm (python-hnswlib): New variable.
 2021-11-15 11:35:03 +00:00
Ricardo Wurmus f2d5597145
gnu: Add texlive-fira. 
* gnu/packages/tex.scm (texlive-fira): New variable.
 2021-11-15 11:34:58 +00:00
phodina ce9b9e7cba
gnu: Add rust-adblock-0.4. 
* gnu/packages/crates-io.scm (rust-adblock-0.4): New variable.
* gnu/packages/patches/rust-adblock-ignore-live-tests.patch: New file.
* gnu/local.mk: Add patch.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-15 11:39:17 +01:00
phodina e5354455e5
gnu: Add rust-tokio-1.8. 
* gnu/packages/crates-io.scm (rust-tokio-1.8): New variable.
  (rust-tokio-1): Inherit from above.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-15 11:38:55 +01:00
phodina a8cce5c3b9
gnu: Add rust-selectors-0.21. 
* gnu/packages/crates-io.scm (rust-selectors-0.21): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-15 11:38:39 +01:00
phodina a19423cd75
gnu: Add rust-rmp-serde-0.13. 
* gnu/packages/crates-io.scm (rust-rmp-serde-0.13): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-15 11:38:23 +01:00
phodina d3d064a073
gnu: Add rust-twoway-0.2. 
* gnu/packages/crates-io.scm (rust-twoway-0.2): New variable.
  (rust-twoway-0.1): Inherit from above.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-15 11:38:08 +01:00
phodina c8f6f58c9a
gnu: rust-rmp-serde: Update to 0.15.5. 
* gnu/packages/crates-io.scm (rust-rmp-serde): Update to 0.15.5.
(rust-serdeconv-0.4)[arguments]: Update rust-rmp-serde-0.15 in cargo-inputs.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-15 11:37:51 +01:00
phodina 62939e47b3
gnu: Add rust-addr-0.14. 
* gnu/packages/crates-io.scm (rust-addr-0.14): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-15 11:37:37 +01:00
phodina 3fb4515d0f
gnu: Add rust-no-std-net-0.5. 
* gnu/packages/crates-io.scm (rust-no-std-net-0.5): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-15 11:37:18 +01:00
phodina 5489dd376f
gnu: Add rust-publicsuffix-2. 
* gnu/packages/crates-io.scm (rust-publicsuffix-2): New variable.
(rust-publicsuffix-1): Inherit from above.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-15 11:36:57 +01:00
phodina 492bec66a8
gnu: Add rust-psl-2. 
* gnu/packages/crates-io.scm (rust-psl-2): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-15 11:36:35 +01:00
phodina 6d5295acb8
gnu: Add rust-psl-types-2. 
* gnu/packages/crates-io.scm (rust-psl-types-2): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-15 11:36:20 +01:00
phodina 01b64290cb
gnu: Add rust-lifeguard-0.6. 
* gnu/packages/crates-io.scm (rust-lifeguard-0.6): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-15 11:36:00 +01:00
Michael Rohleder dd1b0d9d76
gnu: stockfish: Update to 14.1. 
* gnu/packages/games.scm (stockfish): Update to 14.1.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-15 11:33:24 +01:00
pinoaffe 2b1e807733
gnu: Add emacs-org-vcard 
* gnu/packages/emacs-xyz.scm (emacs-org-vcard): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-15 11:32:05 +01:00
phodina via Guix-patches via 879bcb71e8
gnu: Add mtm. 
* gnu/packages/terminals.scm (mtm): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-15 11:26:17 +01:00
jgart 50f3b082a7
gnu: Add music21. 
* gnu/packages/music.scm (music21): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-15 11:17:50 +01:00
Tanguy Le Carrour 1e9bed9ebe
gnu: profanity: Update to 0.11.1. 
* gnu/packages/messaging.scm (profanity): Update to 0.11.1.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-15 11:10:16 +01:00
Tanguy Le Carrour 378955341a
gnu: grisbi: Update to 2.0.5. 
* gnu/packages/finance.scm (grisbi): Update to 2.0.5.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-15 11:08:17 +01:00
Tanguy Le Carrour 2b9b9740fd
gnu: diff-so-fancy: Update to 1.4.2. 
* gnu/packages/version-control.scm (diff-so-fancy): Update to 1.4.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-15 11:07:31 +01:00
Tanguy Le Carrour 76c3e68594
gnu: scrot: Update to 1.7. 
* gnu/packages/xdisorg.scm (scrot): Update to 1.7. [inputs]: Add libbsd.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-15 11:05:29 +01:00
Morgan Smith fa1550647c
gnu: emacs-request: Update to 0.3.2-1.3336eaa. 
* gnu/packages/emacs-xyz.scm (emacs-request): Update to 0.3.2-1.3336eaa.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-15 11:02:06 +01:00
Efraim Flashner 6119120f6d
gnu: lagrange: Update to 1.8.2. 
* gnu/packages/web-browsers.scm (lagrange): Update to 1.8.2.
[source]: Add snippet to remove bundled libraries.
[native-inputs]: Add zip.
 2021-11-15 10:18:09 +02:00
jgart da2ee1b135
gnu: python-furl: Update to 2.1.3. 
* gnu/packages/python-web.scm (python-furl): Update to 2.1.3.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2021-11-15 11:57:37 +05:30
jgart b18df944c5
gnu: python2-orderedmultidict: Remove package. 
* gnu/packages/python-web.scm (python2-orderedmultidict): Delete variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2021-11-15 11:57:37 +05:30
jgart 1fc71de3ab
gnu: python-orderedmultidict: Update to 1.0.1. 
* gnu/packages/python-xyz.scm (python-orderedmultidict): Update to 1.0.1.
[arguments]: Delete custom fix-tests phase.
[native-inputs]: Add python-flake8.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2021-11-15 11:57:18 +05:30
Vagrant Cascadian 272e8f5051
Merge branch 'typo-fixes-20211114' 2021-11-14 18:03:41 -08:00
Vagrant Cascadian 7cad4997e8
gnu: scandb: Fix typo. 
* gnu/packages/emacs-xyz.scm (scandb)[description]: Fix spelling of
  "regularly".
 2021-11-14 17:57:22 -08:00
Leo Famulari c9b171f46b
gnu: MPD: Update to 0.23.4. 
* gnu/packages/mpd.scm (mpd): Update to 0.23.4.
[arguments]: Use meson-next for meson-build-system.
[inputs]: Add fmt.
[native-inputs]: Add cmake.
[properties]: Add release-monitoring-url.
 2021-11-14 20:55:00 -05:00
Vagrant Cascadian 2c75559f72
gnu: python-cligj: Fix typo. 
* gnu/packages/emacs-xyz.scm (python-cligj)[description]: Fix spelling of
  "command".
 2021-11-14 17:53:49 -08:00
Vagrant Cascadian 4b7517cee1
gnu: ghc-quickcheck-classes-base: Fix typo. 
* gnu/packages/emacs-xyz.scm (ghc-quickcheck-classes-base)[description]: Fix
  spelling of "library"
 2021-11-14 17:50:49 -08:00
Vagrant Cascadian 34af64a8cc
gnu: emacs-org-contrib: Fix typo. 
* gnu/packages/emacs-xyz.scm (emacs-org-contrib)[description]: Fix spelling of
  "maintenance".
 2021-11-14 17:47:20 -08:00
Vagrant Cascadian df80817098
gnu: rust-fallible-collections-0.4: Fix typo. 
* gnu/packages/crates-io.scm (rust-fallible-collections-0.4)[description]: Fix
  spelling of "which".
 2021-11-14 17:43:44 -08:00
Vagrant Cascadian 8f392c4817
gnu: r-msfeatures: Fix typo. 
* gnu/packages/bioconductor.scm (r-msfeatures)[description]: Fix spelling of
  "package".
 2021-11-14 17:41:48 -08:00
Vagrant Cascadian 57bf76d832
gnu: home: services: Fix typo. 
* gnu/home/services/xdg.scm (home-xdg-base-directories-service-type): Fix
  spelling of "convenient".
 2021-11-14 17:37:54 -08:00
Vagrant Cascadian e149853845
gnu: home: services: Fix typo. 
* gnu/home/services/utils.scm: Fix spelling of "anything".
 2021-11-14 17:35:30 -08:00
Vagrant Cascadian 6edfcf3e90
gnu: home: services: Fix typo. 
* gnu/home/services/shells.scm (home-shell-profile-configuration): Fix
  spelling of "available".
 2021-11-14 17:33:35 -08:00
Vagrant Cascadian 40a18f4934
home: services: Typo fix. 
* gnu/home/services.scm: Fix spelling of "directory".
 2021-11-14 17:32:51 -08:00
Marius Bakke e5b53b1e82
gnu: python-uritemplate: Update to 4.1.1. 
* gnu/packages/python-web.scm (python-uritemplate): Update to 4.1.1.
[license]: Add LICENSE:ASL2.0.
(python2-uritemplate): Remove variable.
 2021-11-15 00:25:06 +01:00
Marius Bakke d67a5a8a49
gnu: Remove python2-google-api-client. 
Some of its dependencies no longer support Python 2.

* gnu/packages/python-web.scm (python2-google-api-client): Remove variable.
 2021-11-15 00:25:06 +01:00
Marius Bakke eeecee1de8
gnu: python-sqlalchemy: Update to 1.4.27. 
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.4.27.
 2021-11-15 00:25:06 +01:00
Marius Bakke e493f5479c
gnu: python-psycopg2: Update to 2.9.2. 
* gnu/packages/databases.scm (python-psycopg2): Update to 2.9.2.
(python2-psycopg2): Remove variable (no longer supported).
 2021-11-15 00:25:06 +01:00
Marius Bakke 52d9e2c299
gnu: python-pyasn1-modules: Update to 0.2.8. 
* gnu/packages/python-xyz.scm (python-pyasn1-modules): Update to 0.2.8.
 2021-11-15 00:25:06 +01:00
Marius Bakke 3baa1017eb
gnu: Remove python2-sqlalchemy-utils. 
Some of its dependencies no longer support Python 2, so drop it.

* gnu/packages/databases.scm (python2-sqlalchemy-utils): Remove variable.
 2021-11-15 00:25:05 +01:00
Tanguy Le Carrour 0aeb7b91a8
gnu: alot: Disable hanging test. 
* gnu/packages/mail.scm (alot) [#:phases]: Disable hanging test.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-14 23:18:08 +01:00
Ludovic Courtès 4dcec60fa6
home-services: Demonadify 'on-first-login' handling. 
* gnu/home/services.scm (compute-on-first-login-script): Use
'computed-file' instead of' gexp->script'.
(on-first-login-script-entry): Expect a regular value rather than a
monadic value and remove 'mlet'.
 2021-11-14 23:18:08 +01:00
Andrew Tropin 5c2f30d3de
home-services: on-first-login: Check if XDG_RUNTIME_DIR exists. 
Fixes <https://issues.guix.gnu.org/50945>.
Reported by Jan Nieuwenhuizen <janneke@gnu.org>.

* gnu/home-services.scm (on-first-login): on-first-login won't execute
anything if XDG_RUNTIME_DIR doesn't exists.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-14 23:18:08 +01:00
Vagrant Cascadian 2ebcc5387b
gnu: u-boot, u-boot-am335x-boneblack, u-boot-novena: Fix lint warnings. 
* gnu/packages/bootloaders.scm (u-boot)[description]: Add second space after
  sentence.
  (u-boot-am335x-boneblack)[description]: Likewise.
  (u-boot-novena)[description]: Likewise.
 2021-11-14 13:47:51 -08:00
Julien Lepiller 97909fd6fd
gnu: python-translate-toolkit: Update to 3.5.1. 
* gnu/packages/python-xyz (python-translate-toolkit): Update to 3.5.1.
(python2-translate-toolkit): Keep at previous version.
 2021-11-14 20:34:30 +01:00
Christopher Baines 83289ca255
gnu: guix-build-coordinator: Update to 0-36.87508af. 
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-36.87508af.
 2021-11-14 16:27:30 +00:00
Arun Isaac d29a9aa54b
gnu: Add borgmatic. 
* gnu/packages/backup.scm (borgmatic): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-14 15:25:16 +01:00
Foo Chuan Wei 686b9403a0
gnu: Add nsxiv. 
* gnu/packages/image-viewers.scm (nsxiv): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-14 15:20:18 +01:00
jgart via Guix-patches via 1a72b6e999
gnu: Add neatmail. 
* gnu/packages/mail.scm (neatmail): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-14 15:14:51 +01:00
Efraim Flashner bd1f30047d
gnu: pinentry-tty: Update to 1.2.0. 
* gnu/packages/gnupg.scm (pinentry-tty): Update to 1.2.0.
 2021-11-14 14:11:59 +02:00
Efraim Flashner fb7424f2f8
gnu: terminology: Update to 1.11.0. 
* gnu/packages/enlightenment.scm (terminology): Update to 1.11.0.
 2021-11-14 09:17:59 +02:00
Leo Famulari 9aab7bb05f
gnu: linux-libre 4.9: Update to 4.9.292. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.292.
(linux-libre-4.9-pristine-source): Update hash.
 2021-11-13 22:44:03 -05:00
Leo Famulari 727b6e0c43
gnu: linux-libre 4.9: Update to 4.9.290. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.290.
(linux-libre-4.9-pristine-source): Update hash.
 2021-11-13 22:44:03 -05:00
Leo Famulari 2fdd6fe3fc
gnu: linux-libre 4.14: Update to 4.14.255. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.255.
(linux-libre-4.14-pristine-source): Update hash.
 2021-11-13 22:44:03 -05:00
Leo Famulari f6c0ca2f9d
gnu: linux-libre 4.19: Update to 4.19.217. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.217.
(linux-libre-4.19-pristine-source): Update hash.
 2021-11-13 22:44:03 -05:00
Leo Famulari af6cc0dc6f
gnu: linux-libre 5.4: Update to 5.4.159. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.159.
(linux-libre-5.4-pristine-source): Update hash.
 2021-11-13 22:44:02 -05:00
Leo Famulari d48224da8f
gnu: linux-libre 5.10: Update to 5.10.79. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.79.
(linux-libre-5.10-pristine-source): Update hash.
 2021-11-13 22:44:02 -05:00
Leo Famulari efa6a40fa1
gnu: linux-libre: Update to 5.14.18. 
* gnu/packages/linux.scm (linux-libre-5.14-version): Update to 5.14.18.
(linux-libre-5.14-pristine-source): Update hash.
 2021-11-13 22:43:59 -05:00
Tobias Geerinckx-Rice 7f7f739e23
gnu: mu: Update to 1.6.10. 
* gnu/packages/mail.scm (mu): Update to 1.6.10.
 2021-11-14 02:45:05 +01:00
Ludovic Courtès 2bb0d8bf0c
gnu: renameutils: Fix license and tweak. 
* gnu/packages/shellutils.scm (renameutils)[source]: Use mirror:// URL.
[license]: Change to GPL3+.
[description]: Use @command markup.
 2021-11-14 00:29:58 +01:00
Wiktor Żelazny d0313cdf5f
gnu: Add renameutils. 
* gnu/packages/shellutils.scm (renameutils): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-14 00:25:30 +01:00
James Thomas 704bd694d1
gnu: Add purple-lurch. 
* gnu/packages/messaging.scm (purple-lurch): New variable

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-14 00:19:38 +01:00
James Thomas 2a05676873
gnu: Add libomemo. 
* gnu/packages/messaging.scm (libomemo): New variable

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-14 00:18:48 +01:00
James Thomas 8e5df0cea8
gnu: Add axc. 
* gnu/packages/messaging.scm (axc): New variable

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-14 00:18:11 +01:00
Greg Hogan 01eb317b9e
gnu: bear: Update to 3.0.16. 
* gnu/packages/build-tools.scm (bear): Update to 3.0.16.
* gnu/packages/patches/bear-disable-preinstall-tests.patch: Update.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-14 00:10:58 +01:00
Greg Hogan 459d7cfbc4
gnu: fmt: Update to 8.0.1. 
* gnu/packages/pretty-print.scm (fmt): Update to 8.0.1,
(fmt-7): New variable.
* gnu/packages/astronomy.scm (celestia)[inputs],
gnu/packages/kodi.scm (kodi)[inputs],
gnu/packages/lua.scm (emilua)[inputs]: Change to fmt-7.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-14 00:10:58 +01:00
Greg Hogan 357ecb777e
gnu: waybar: Update to 0.9.8. 
* gnu/packages/wm.scm (waybar): Update to 0.9.8.
[inputs]: Add libxml2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-14 00:10:58 +01:00
Greg Hogan c899566b2f
gnu: spdlog: Update to 1.9.2. 
* gnu/packages/logging.scm (spdlog): Update to 1.9.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-14 00:10:58 +01:00
Tobias Geerinckx-Rice e9e1627849
gnu: duplicity: Update to 0.8.21. 
* gnu/packages/backup.scm (duplicity): Update to 0.8.21.
[arguments]: Don't explicitly return #t from phases.
 2021-11-13 21:53:56 +01:00
Eric Bavier f116b4764b
gnu: Add Breezy. 
* gnu/packages/version-control.scm (breezy): New variable.
 2021-11-13 00:29:26 -06:00
Vagrant Cascadian dc05fea1db
gnu: diffoscope: Update to 192. 
* gnu/packages/diffoscope.scm (diffoscope): Update to 192.
 2021-11-12 15:08:55 -08:00
Morgan Smith 3374894786
gnu: Add rss2email. 
* gnu/packages/mail.scm (rss2email): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-12 23:58:32 +01:00
Morgan Smith d402340625
gnu: python-feedparser: Add input 
* gnu/packages/web.scm (python-feedparser) [propagated-inputs]: Add
python-sgmllib3k

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-12 23:56:51 +01:00
Morgan Smith 729936cfa4
gnu: Add python-sgmllib3k. 
* gnu/packages/python-xyz.scm (python-sgmllib3k): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-12 23:56:50 +01:00
Tom Fitzhenry 18cf347a64
gnu: Add emacs-flymake-flycheck. 
* gnu/packages/emacs-xyz.scm (emacs-flymake-flycheck): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-12 23:49:13 +01:00
Timotej Lazar f634a0baab
services: Add qemu-guest-agent service. 
* gnu/services/virtualization.scm (<qemu-guest-agent-configuration>): New
record.
(qemu-guest-agent-shepherd-service): New procedure.
(qemu-guest-agent-service-type): New variable.
* doc/guix.texi (Virtualization Services): Document it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-12 23:41:44 +01:00
Danny Milosavljevic da73727f1a
gnu: Add texlive-latex-bussproofs. 
* gnu/packages/tex.scm (texlive-latex-bussproofs): New variable.
 2021-11-12 16:22:35 +01:00
Mathieu Othacehe fb3df20116
build: bootloader: Add GPT support. 
* gnu/build/bootloader.scm (install-efi-loader): Add GPT support.
 2021-11-12 13:26:52 +00:00
Ryan Sundberg 096a2bf8c5
image: Support generating GPT images via `partition-table-type`. 
* gnu/image.scm (<image>)[partition-table-type]: New field.
* gnu/system/image.scm: Implement partition-table-type logic for
genimage.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-11-12 12:06:58 +00:00
Ryan Sundberg 39754503e8
gnu: genimage: Update to 14. 
Update genimage from version 11 to 14. A patch is required for the
tests due to differences in ext tooling.

* gnu/local.mk (dist_patch_DATA): Replace patch reference.
* gnu/packages/genimage.scm: Update package source.
* gnu/packages/patches/genimage-mke2fs-test.patch: New patch file.
* gnu/packages/patches/genimage-signedness.patch: Delete obsolete patch.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-11-12 12:02:32 +00:00
Mathieu Othacehe 6e67c701a8
gnu: cuirass: Update to 1.1.0-5.ea09658. 
* gnu/packages/ci.scm (cuirass): Update to 1.1.0-5.ea09658.
 2021-11-12 10:30:59 +00:00
Mark H Weaver 33a80e1110
gnu: tar: Replace with 1.34 [fixes CVE-2021-20193]. 
* gnu/packages/base.scm (tar)[replacement]: New field.
(tar-1.34): New variable.
 2021-11-12 02:52:46 -05:00
Ricardo Wurmus 893a31ec20
gnu: rust-rustc-version-0.3: Update home page. 
* gnu/packages/crates-io.scm (rust-rustc-version-0.3)[home-page]: Update it.
 2021-11-11 15:39:19 +00:00
Ricardo Wurmus a0fc9e38fa
gnu: ciri-long: Move Cython to native inputs. 
* gnu/packages/bioinformatics.scm (ciri-long)[inputs]: Move python-cython from
here...
[native-inputs]: ...to here.
 2021-11-11 15:39:19 +00:00
Ricardo Wurmus c4e5fabb6e
gnu: ciri-long: Fix reference to ccs. 
* gnu/packages/bioinformatics.scm (ciri-long)[arguments]: Add build phase
"fix-reference-to-ccs".
[inputs]: Add circtools.
 2021-11-11 15:39:19 +00:00
Ricardo Wurmus 6be47c5bc5
gnu: Add circtools. 
* gnu/packages/bioinformatics.scm (circtools): New variable.
 2021-11-11 15:39:19 +00:00
Ricardo Wurmus b8c9f061e1
gnu: Add bioparser. 
* gnu/packages/bioinformatics.scm (bioparser): New variable.
 2021-11-11 15:39:19 +00:00
Ricardo Wurmus 4052310e91
gnu: Add biosoup. 
* gnu/packages/bioinformatics.scm (biosoup): New variable.
 2021-11-11 15:39:19 +00:00
Ricardo Wurmus b905d7c1d6
gnu: Add rust-seq-io-0.3. 
* gnu/packages/crates-io.scm (rust-seq-io-0.3): New variable.
 2021-11-11 15:39:19 +00:00
Ricardo Wurmus e624622cfd
gnu: Add rust-bio-0.32. 
* gnu/packages/crates-io.scm (rust-bio-0.32): New variable.
 2021-11-11 15:39:18 +00:00
Ricardo Wurmus 33802ba09e
gnu: Add rust-snafu-0.6. 
* gnu/packages/crates-io.scm (rust-snafu-0.6): New variable.
 2021-11-11 15:39:18 +00:00
Ricardo Wurmus 0e5127c0aa
gnu: Add rust-statrs-0.12. 
* gnu/packages/crates-io.scm (rust-statrs-0.12): New variable.
 2021-11-11 15:39:18 +00:00
Ricardo Wurmus 7d00ffc8fc
gnu: Add rust-snafu-derive-0.6. 
* gnu/packages/crates-io.scm (rust-snafu-derive-0.6): New variable.
 2021-11-11 15:39:18 +00:00
Ricardo Wurmus 01da92eef3
gnu: Add rust-fastq-0.6. 
* gnu/packages/crates-io.scm (rust-fastq-0.6): New variable.
 2021-11-11 15:39:18 +00:00
Ricardo Wurmus 86fa7a70d8
gnu: Add rust-parasailors-0.3. 
* gnu/packages/crates-io.scm (rust-parasailors-0.3): New variable.
 2021-11-11 15:39:18 +00:00
Ricardo Wurmus c576b3b369
gnu: Add rust-parasail-sys-0.2. 
* gnu/packages/crates-io.scm (rust-parasail-sys-0.2): New variable.
 2021-11-11 15:39:17 +00:00
Ricardo Wurmus 067de0230e
gnu: Add rust-bio-0.33. 
* gnu/packages/crates-io.scm (rust-bio-0.33): New variable.
 2021-11-11 15:39:17 +00:00
Ricardo Wurmus 60d2566e05
gnu: Add rust-glam-0.17. 
* gnu/packages/crates-io.scm (rust-glam-0.17): New variable.
 2021-11-11 15:39:17 +00:00
Ricardo Wurmus 43260f681b
gnu: Add rust-glam-0.16. 
* gnu/packages/crates-io.scm (rust-glam-0.16): New variable.
 2021-11-11 15:39:17 +00:00
Ricardo Wurmus 15abac14ac
gnu: Add rust-glam-0.15. 
* gnu/packages/crates-io.scm (rust-glam-0.15): New variable.
 2021-11-11 15:39:17 +00:00
Ricardo Wurmus d44ae04cfd
gnu: Add rust-statrs-0.14. 
* gnu/packages/crates-io.scm (rust-statrs-0.14): New variable.
 2021-11-11 15:39:16 +00:00
Ricardo Wurmus 7af81d8c7f
gnu: Add rust-nalgebra-macros-0.1. 
* gnu/packages/crates-io.scm (rust-nalgebra-macros-0.1): New variable.
 2021-11-11 15:39:16 +00:00
Ricardo Wurmus 02bf5e1431
gnu: Add rust-nalgebra-0.26. 
* gnu/packages/crates-io.scm (rust-nalgebra-0.26): New variable.
 2021-11-11 15:39:16 +00:00
Ricardo Wurmus 5f42641ba7
gnu: Add rust-enum-map-0.6. 
* gnu/packages/crates-io.scm (rust-enum-map-0.6): New variable.
 2021-11-11 15:39:16 +00:00
Ricardo Wurmus 7c4a6245c7
gnu: Add rust-enum-map-derive-0.4. 
* gnu/packages/crates-io.scm (rust-enum-map-derive-0.4): New variable.
 2021-11-11 15:39:16 +00:00
Ricardo Wurmus dba9c7d7e0
gnu: Add rust-statrs-0.13. 
* gnu/packages/crates-io.scm (rust-statrs-0.13): New variable.
 2021-11-11 15:39:16 +00:00
Ricardo Wurmus d75a5c5d89
gnu: Add rust-glam-0.14. 
* gnu/packages/crates-io.scm (rust-glam-0.14): New variable.
 2021-11-11 15:39:15 +00:00
Ricardo Wurmus 4089e0df25
gnu: Add rust-array-macro-1. 
* gnu/packages/crates-io.scm (rust-array-macro-1): New variable.
 2021-11-11 15:39:15 +00:00
Ricardo Wurmus 6e73186849
gnu: Add rust-matrixcompare-0.3. 
* gnu/packages/crates-io.scm (rust-matrixcompare-0.3): New variable.
 2021-11-11 15:39:15 +00:00
Ricardo Wurmus 0be2f293e4
gnu: Add rust-matrixcompare-mock-0.1. 
* gnu/packages/crates-io.scm (rust-matrixcompare-mock-0.1): New variable.
 2021-11-11 15:39:15 +00:00
Ricardo Wurmus 15b51023f2
gnu: Add rust-getset-0.0.9. 
* gnu/packages/crates-io.scm (rust-getset-0.0.9): New variable.
 2021-11-11 15:39:15 +00:00
Ricardo Wurmus 0c90fd7856
gnu: Add rust-newtype-derive-0.1. 
* gnu/packages/crates-io.scm (rust-newtype-derive-0.1): New variable.
 2021-11-11 15:39:14 +00:00
Ricardo Wurmus 3f6fd2d0da
gnu: Add rust-rustc-version-0.1. 
* gnu/packages/crates-io.scm (rust-rustc-version-0.1): New variable.
 2021-11-11 15:39:14 +00:00
Ricardo Wurmus e7d7434895
gnu: Add rust-semver-0.1. 
* gnu/packages/crates-io.scm (rust-semver-0.1): New variable.
 2021-11-11 15:39:14 +00:00
Ricardo Wurmus 9a6b269b81
gnu: Add rust-multimap-0.8. 
* gnu/packages/crates-io.scm (rust-multimap-0.8): New variable.
 2021-11-11 15:39:14 +00:00
Ricardo Wurmus 0885604727
gnu: Add rust-bv-0.11. 
* gnu/packages/crates-io.scm (rust-bv-0.11): New variable.
 2021-11-11 15:39:14 +00:00
Ricardo Wurmus 4ef9ef0aa3
gnu: Add rust-feature-probe-0.1. 
* gnu/packages/crates-io.scm (rust-feature-probe-0.1): New variable.
 2021-11-11 15:39:14 +00:00
Ricardo Wurmus 6a4b4d3c1d
gnu: Add rust-bio-types-0.12. 
* gnu/packages/crates-io.scm (rust-bio-types-0.12): New variable.
 2021-11-11 15:39:13 +00:00
Ricardo Wurmus 94abd4b740
gnu: Add rust-triple-accel-0.3. 
* gnu/packages/crates-io.scm (rust-triple-accel-0.3): New variable.
 2021-11-11 15:39:13 +00:00
Ricardo Wurmus c285cb7ebe
gnu: Add rust-glam-0.13. 
* gnu/packages/crates-io.scm (rust-glam-0.13): New variable.
 2021-11-11 15:39:13 +00:00
Ricardo Wurmus 9886c012de
gnu: Add rust-matrixcompare-0.2. 
* gnu/packages/crates-io.scm (rust-matrixcompare-0.2): New variable.
 2021-11-11 15:39:13 +00:00
Ricardo Wurmus 8f8863026e
gnu: Add rust-matrixcompare-core-0.1. 
* gnu/packages/crates-io.scm (rust-matrixcompare-core-0.1): New variable.
 2021-11-11 15:39:13 +00:00
Ricardo Wurmus fb4340e1ee
gnu: Add rust-spirv-std-0.4. 
* gnu/packages/crates-io.scm (rust-spirv-std-0.4): New variable.
 2021-11-11 15:39:13 +00:00
Ricardo Wurmus 3cd8964a80
gnu: Add rust-spirv-std-macros-0.4. 
* gnu/packages/crates-io.scm (rust-spirv-std-macros-0.4): New variable.
 2021-11-11 15:39:12 +00:00
Ricardo Wurmus e80093153a
gnu: Add rust-spirv-types-0.4. 
* gnu/packages/crates-io.scm (rust-spirv-types-0.4): New variable.
 2021-11-11 15:39:12 +00:00
Ricardo Wurmus bcbd0fc8da
gnu: Add rust-simba-0.4. 
* gnu/packages/crates-io.scm (rust-simba-0.4): New variable.
 2021-11-11 15:39:12 +00:00
Ricardo Wurmus 2f06d1bb51
gnu: Add rust-rand-isaac-0.3. 
* gnu/packages/crates-io.scm (rust-rand-isaac-0.3): New variable.
 2021-11-11 15:39:12 +00:00
Ricardo Wurmus e182b691ea
gnu: rust-heck-0.3: Update to 0.3.2. 
* gnu/packages/crates-io.scm (rust-heck-0.3): Update to 0.3.2.
 2021-11-11 15:39:12 +00:00
Ricardo Wurmus d29fa445e5
gnu: Add rust-bytemuck-1.5. 
* gnu/packages/crates-io.scm (rust-bytemuck-1.5): New variable.
 2021-11-11 15:39:11 +00:00
Ricardo Wurmus c7ffcdea70
gnu: Add rust-rand-distr-0.4. 
* gnu/packages/crates-io.scm (rust-rand-distr-0.4): New variable.
 2021-11-11 15:39:11 +00:00
Ricardo Wurmus 0cd5039345
gnu: Add rust-special-0.8. 
* gnu/packages/crates-io.scm (rust-special-0.8): New variable.
 2021-11-11 15:39:11 +00:00
Ricardo Wurmus 935d53537c
gnu: Add rust-random-0.12. 
* gnu/packages/crates-io.scm (rust-random-0.12): New variable.
 2021-11-11 15:39:11 +00:00
Ricardo Wurmus 8be33436db
gnu: Add rust-assert-0.7. 
* gnu/packages/crates-io.scm (rust-assert-0.7): New variable.
 2021-11-11 15:39:11 +00:00
Ricardo Wurmus 458b1c22bf
gnu: Add rust-rand-pcg-0.3. 
* gnu/packages/crates-io.scm (rust-rand-pcg-0.3): New variable.
 2021-11-11 15:39:11 +00:00
Ricardo Wurmus 88319040c1
gnu: Add rust-average-0.13. 
* gnu/packages/crates-io.scm (rust-average-0.13): New variable.
 2021-11-11 15:39:10 +00:00
Ricardo Wurmus de772f8bf4
gnu: Add rust-easy-cast-0.4. 
* gnu/packages/crates-io.scm (rust-easy-cast-0.4): New variable.
 2021-11-11 15:39:10 +00:00
Ricardo Wurmus e326a4fbe3
gnu: Add rust-float-ord-0.3. 
* gnu/packages/crates-io.scm (rust-float-ord-0.3): New variable.
 2021-11-11 15:39:10 +00:00
Ricardo Wurmus bb8a0af292
gnu: Add rust-serde-big-array-0.3. 
* gnu/packages/crates-io.scm (rust-serde-big-array-0.3): New variable.
 2021-11-11 15:39:10 +00:00
Ricardo Wurmus 87a1ca383a
gnu: Add rust-rand-xoshiro-0.6. 
* gnu/packages/crates-io.scm (rust-rand-xoshiro-0.6): New variable.
 2021-11-11 15:39:10 +00:00
Ricardo Wurmus d487e12576
gnu: Add rust-rkyv-0.6. 
* gnu/packages/crates-io.scm (rust-rkyv-0.6): New variable.
 2021-11-11 15:39:09 +00:00
Ricardo Wurmus 5b6a550690
gnu: Add rust-bytecheck-0.5. 
* gnu/packages/crates-io.scm (rust-bytecheck-0.5): New variable.
 2021-11-11 15:39:09 +00:00
Ricardo Wurmus 11fb842ae9
gnu: Add rust-ptr-meta-0.1. 
* gnu/packages/crates-io.scm (rust-ptr-meta-0.1): New variable.
 2021-11-11 15:39:09 +00:00
Ricardo Wurmus 574647b855
gnu: Add rust-ptr-meta-derive-0.1. 
* gnu/packages/crates-io.scm (rust-ptr-meta-derive-0.1): New variable.
 2021-11-11 15:39:09 +00:00
Ricardo Wurmus 8ef352a773
gnu: Add rust-bytecheck-derive-0.5. 
* gnu/packages/crates-io.scm (rust-bytecheck-derive-0.5): New variable.
 2021-11-11 15:39:09 +00:00
Ricardo Wurmus 97ead3fbf3
gnu: Add rust-simba-0.5. 
* gnu/packages/crates-io.scm (rust-simba-0.5): New variable.
 2021-11-11 15:39:09 +00:00
Ricardo Wurmus 723ff70e21
gnu: Add rust-approx-0.5. 
* gnu/packages/crates-io.scm (rust-approx-0.5): New variable.
 2021-11-11 15:39:08 +00:00