39d6c13fda
gnu: python-hic2cool: Fix build.
...
* gnu/packages/bioinformatics.scm (python-hic2cool)[arguments]: Fix
incompatibility with h5py 3; disable two tests.
2022-05-02 17:33:31 +02:00
7494f4b4ab
gnu: Add r-agimicrorna.
...
* gnu/packages/bioconductor.scm (r-agimicrorna): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-05-02 15:23:50 +02:00
9c19db8c1d
gnu: Add r-adductomicsr.
...
* gnu/packages/bioconductor.scm (r-adductomicsr): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-05-02 15:17:28 +02:00
495bc9f962
gnu: Add r-orgmassspecr.
...
* gnu/packages/cran.scm (r-orgmassspecr): New variable.
2022-05-02 15:17:28 +02:00
290934c8fc
gnu: Add r-adductdata.
...
* gnu/packages/bioconductor.scm (r-adductdata): New variable.
2022-05-02 15:17:28 +02:00
f455c1e313
gnu: Add python-scrapy.
...
* gnu/packages/python-web.scm (python-scrapy): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:46 +02:00
d9a7f652e2
gnu: Add python-itemloaders.
...
* gnu/packages/python-xyz.scm (python-itemloaders): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:46 +02:00
76b6337650
gnu: Add python-parsel.
...
* gnu/packages/python-web.scm (python-parsel): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:46 +02:00
d219d48cce
gnu: Add python-protego.
...
* gnu/packages/python-web.scm (python-protego): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:46 +02:00
c0c16d6b84
gnu: Add python-itemadapter.
...
* gnu/packages/python-xyz.scm (python-itemadapter): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:45 +02:00
fce913281f
gnu: Add python-queuelib.
...
* gnu/packages/python-xyz.scm (python-queuelib): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:45 +02:00
f728d1dcd2
gnu: Add python-pydispatcher.
...
* gnu/packages/python-xyz.scm (python-pydispatcher): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:45 +02:00
919fdd6fcc
gnu: Add python-sybil.
...
* gnu/packages/python-check.scm (python-sybil): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:45 +02:00
8ffd8fc64e
gnu: bear: Update to 3.0.19.
...
* gnu/packages/build-tools.scm (bear): Update to 3.0.19.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:45 +02:00
9bf9da2571
gnu: spdlog: Update to 1.10.0.
...
* gnu/packages/logging.scm (spdlog): Update to 1.10.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:45 +02:00
c152174ca2
gnu: fmt: Update to 8.1.1.
...
* gnu/packages/pretty-print.scm (fmt): Update to 8.1.1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:44 +02:00
67b10f18c7
gnu: apl: Use G-expressions.
...
* gnu/packages/apl.scm (apl)[arguments]: Use G-expressions.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:44 +02:00
fe6ba5e902
gnu: apl: Remove input labels.
...
* gnu/packages/apl.scm (apl)[inputs]: Remove labels and sort.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:44 +02:00
94b1905580
gnu: apl: Update to 1.8-r1550.
...
This commit fixes a failing build caused by -Werror (the configure
script no longer sets the -Werror compilation flag).
* gnu/packages/apl.scm (apl): Update to 1.8-r1550.
[arguments]: Add 'fix-configure' phase.
[license]: Prefix with 'license:'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:44 +02:00
35e5d2ce56
gnu: Add emacs-git-email.
...
* gnu/packages/emacs-xyz.scm (emacs-git-email): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:44 +02:00
75b7f495d0
gnu: ugrep: Update to 3.7.9.
...
* gnu/packages/search.scm (ugrep): Update to 3.7.9.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:44 +02:00
a8fde99e80
gnu: aws-sdk-cpp: Remove openssl input.
...
* gnu/packages/cpp.scm (aws-sdk-cpp):
[inputs]: Remove openssl.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:43 +02:00
af856afb6c
gnu: s2n: Link to aws-lc as libcrypto dependency.
...
* gnu/packages/tls.scm (s2n):
[arguments]: Fix for openssl as replacement input for aws-lc.
[propagated-inputs]: Add aws-lc and remove openssl.
[supported-systems]: Only support x86_64-linux.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:43 +02:00
a5a408c3a7
gnu: aws-lc: Fix checksum and enable tests.
...
* gnu/packages/tls.scm (aws-lc):
[source]: Fix checksum.
[arguments]: Enable tests.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:43 +02:00
fec71efeae
gnu: aws-crt-cpp: Fix comment formatting.
...
* gnu/packages/cpp.scm (aws-crt-cpp): Fix comment formatting.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:43 +02:00
a822f3e2d0
gnu: aws-c-mqtt: Fix comment formatting.
...
* gnu/packages/c.scm (aws-c-mqtt): Fix comment formatting.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:43 +02:00
b62d4872ba
gnu: aws-c-s3: Fix comment formatting.
...
* gnu/packages/c.scm (aws-c-s3): Fix comment formatting.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:43 +02:00
d62c101991
gnu: aws-c-auth: Fix comment formatting.
...
* gnu/packages/c.scm (aws-c-auth): Fix comment formatting.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:43 +02:00
b8c4bb3e0d
gnu: aws-c-compression: Fix comment formatting.
...
* gnu/packages/c.scm (aws-c-compression): Fix comment formatting.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:42 +02:00
d7c8a83549
gnu: aws-c-http: Fix comment formatting.
...
* gnu/packages/c.scm (aws-c-http): Fix comment formatting.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:42 +02:00
e8f2855d73
gnu: aws-c-sdkutils: Fix comment formatting.
...
* gnu/packages/c.scm (aws-c-sdkutils): Fix comment formatting.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:42 +02:00
c7805de435
gnu: aws-c-cal: Fix comment formatting.
...
* gnu/packages/c.scm (aws-c-cal): Fix comment formatting.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:42 +02:00
d230c67068
gnu: aws-c-io: Fix comment formatting.
...
* gnu/packages/c.scm (aws-c-io): Fix comment formatting.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:42 +02:00
4dbb1520e2
gnu: aws-c-event-stream: Fix comment formatting.
...
* gnu/packages/c.scm (aws-c-event-stream): Fix comment formatting.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:42 +02:00
a9b4d69c9c
gnu: aws-checksums: Fix comment formatting.
...
* gnu/packages/c.scm (aws-checksums): Fix comment formatting.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:42 +02:00
acbf5b1022
gnu: aws-c-common: Only support i686 and x86_64.
...
* gnu/packages/c.scm (aws-c-common):
[supported-systems]: Only support i686-linux and x86_64-linux.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-02 15:14:41 +02:00
6075d25143
services: bitlbee: Preserve 'PURPLE_PLUGIN_PATH'.
...
Fixes a regression introduced in
211fe3f66e
2022-05-02 15:14:41 +02:00
b1dd32d8e3
gnu: htslib-for-stringtie: Inherit from htslib-1.12.
...
* gnu/packages/bioinformatics.scm (htslib-for-stringtie): Inherit from
htslib-1.12.
2022-05-02 14:35:26 +02:00
4571b218b5
gnu: Remove python-xlrd-1.
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* gnu/packages/python-xyz.scm (python-xlrd-1): Remove variable.
2022-05-02 13:49:57 +02:00
4642a50d52
gnu: Remove python-cytoolz-for-cooler.
...
* gnu/packages/python-xyz.scm (python-cytoolz-for-cooler): Remove variable.
2022-05-02 13:35:03 +02:00
5caad9f252
gnu: python-cooler: Use more recent cytoolz.
...
* gnu/packages/bioinformatics.scm (python-cooler)[propagated-inputs]: Replace
python-cytoolz-for-cooler with python-cytoolz.
2022-05-02 13:33:16 +02:00
9dafaf1635
gnu: python-anndata: Remove python-xlrd-1.
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* gnu/packages/python-xyz.scm (python-anndata)[propagated-inputs]: Remove
python-xlrd-1.
2022-05-02 12:39:02 +02:00
098f2eea33
gnu: ungoogled-chromium: Update to 101.0.4951.41-1.
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* gnu/packages/chromium.scm (%preserved-third-party-files): Include bundled
Vulkan headers.
(%chromium-version): Set to 101.0.4951.41.
(%debian-revision): Set to debian/101.0.4951.41-2.
(%debian-patches): Add one new patch.
(%ungoogled-origin, ungoogled-chromium): Update hashes.
* gnu/packages/patches/ungoogled-chromium-system-nspr.patch: Refresh.
2022-05-01 22:28:31 +02:00
fee06d5aaa
services: opendht: Use 'least-authority-wrapper'.
...
* gnu/services/networking.scm (opendht-configuration->command-line-arguments):
Use 'least-authority-wrapper'.
(opendht-shepherd-service): Use 'make-forkexec-constructor'.
2022-05-01 21:30:36 +02:00
dac4efc466
services: quassel: Use 'least-authority-wrapper'.
...
* gnu/services/messaging.scm (quassel-shepherd-service): Use
'least-authority-wrapper' instead of
'make-forkexec-constructor/container'.
2022-05-01 21:30:36 +02:00
53dbc6fd9a
services: wesnothd: Use 'least-authority-wrapper'.
...
* gnu/services/games.scm (wesnothd-shepherd-service): Use
'least-authority-wrapper' instead of
'make-forkexec-constructor/container'.
2022-05-01 21:30:36 +02:00
19df5f2423
services: wesnothd: Grant write access to /var/run/wesnothd.
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* gnu/services/games.scm (wesnothd-shepherd-service): Augment 'modules'
field. Pass #:mappings argument to 'make-forkexec-constructor/container'.
(wesnothd-activation): New variable.
(wesnothd-service-type): Extend ACTIVATION-SERVICE-TYPE.
2022-05-01 21:30:36 +02:00
f5ef68ba98
services: ipfs: Use 'least-authority-wrapper'.
...
* gnu/services/networking.scm (ipfs-binary): Call
'least-authority-wrapper'.
(%ipfs-home-mapping): Remove surrounding gexp.
(ipfs-shepherd-service)[exec-command]: New procedure.
[ipfs-config-command, set-config!-gexp, shepherd&co]
[container-gexp, container-script]: Remove.
[inner-gexp]: Use 'exec-command'.
2022-05-01 21:30:35 +02:00
211fe3f66e
services: bitlbee: Use 'make-inetd-constructor'.
...
* gnu/services/messaging.scm (bitlbee-shepherd-service): Add call to
'least-authority-wrapper'. In 'start' method, use
'make-inetd-constructor' when available.
* gnu/tests/messaging.scm (run-bitlbee-test)["valid PID"]: Remove test.
2022-05-01 21:30:35 +02:00
fd57ce267c
services: dicod: Use 'make-inetd-constructor'.
...
* gnu/services/dict.scm (dicod-shepherd-service): Use
'make-inetd-constructor' in the 'start' method when available.
2022-05-01 21:30:35 +02:00
Ricardo Wurmus
Mădălin Ionel Patrașcu
Felix Gruber
Greg Hogan
Paul A. Patience
Niklas Eklund
kiasoc5
Ludovic Courtès
Marius Bakke