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450 Commits (084c651cbf5a7086e810c0e8f9593b0bd27e32d0)

Author SHA1 Message Date
Ricardo Wurmus 084c651cbf
gnu: r-oligo: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.50.0.
2019-12-15 15:38:53 +01:00
Ricardo Wurmus 79820b9fe9
gnu: r-oligoclasses: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.48.0.
2019-12-15 15:38:53 +01:00
Ricardo Wurmus 7778e91a2d
gnu: r-geneplotter: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.64.0.
2019-12-15 15:38:53 +01:00
Ricardo Wurmus 7ccbaf1b6e
gnu: r-reportingtools: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.26.0.
2019-12-15 15:38:53 +01:00
Ricardo Wurmus 2e73ea955b
gnu: r-regioner: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.18.0.
2019-12-15 15:38:53 +01:00
Ricardo Wurmus ddd3673928
gnu: r-hpar: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.28.0.
2019-12-15 15:38:53 +01:00
Ricardo Wurmus 7a111924ee
gnu: r-annotate: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.64.0.
2019-12-15 15:38:52 +01:00
Ricardo Wurmus ce5162d09d
gnu: r-affxparser: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.58.0.
2019-12-15 15:38:52 +01:00
Ricardo Wurmus 1693534f76
gnu: r-affycoretools: Update to 1.58.2.
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.2.
2019-12-15 15:38:52 +01:00
Ricardo Wurmus f561421d04
gnu: r-affycontam: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.44.0.
2019-12-15 15:38:52 +01:00
Ricardo Wurmus c2fa63e905
gnu: r-affycompatible: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.46.0.
2019-12-15 15:38:52 +01:00
Ricardo Wurmus 5d87f12615
gnu: r-affycomp: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.62.0.
2019-12-15 15:38:52 +01:00
Ricardo Wurmus be5e4e9615
gnu: r-biocgenerics: Update to 0.32.0.
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.32.0.
2019-12-15 15:38:52 +01:00
Ricardo Wurmus 2c8433ca0a
gnu: r-depecher: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.0.
[arguments]: Remove field.
[propagated-inputs]: Remove r-biocparallel; add r-fnn and r-robustbase.
2019-12-15 15:38:52 +01:00
Ricardo Wurmus 7a62d5e0c2
gnu: Add r-cytoml.
* gnu/packages/bioconductor.scm (r-cytoml): New variable.
2019-12-15 15:38:52 +01:00
Ricardo Wurmus 6aedc80514
gnu: Add r-opencyto.
* gnu/packages/bioconductor.scm (r-opencyto): New variable.
2019-12-15 15:38:52 +01:00
Ricardo Wurmus b700b9ec21
gnu: Add r-flowstats.
* gnu/packages/bioconductor.scm (r-flowstats): New variable.
2019-12-15 15:38:52 +01:00
Ricardo Wurmus 82c1111745
gnu: Add r-flowworkspace.
* gnu/packages/bioconductor.scm (r-flowworkspace): New variable.
2019-12-15 15:38:52 +01:00
Ricardo Wurmus f1964519e7
gnu: Add r-rprotobuflib.
* gnu/packages/bioconductor.scm (r-rprotobuflib): New variable.
2019-12-15 15:38:52 +01:00
Ricardo Wurmus c8ab9eb1b4
gnu: Add r-flowclust.
* gnu/packages/bioconductor.scm (r-flowclust): New variable.
2019-12-15 15:38:52 +01:00
Ricardo Wurmus 0dd4b7d732
gnu: Add r-flowviz.
* gnu/packages/bioconductor.scm (r-flowviz): New variable.
2019-12-15 15:38:52 +01:00
Ricardo Wurmus f5f440312d
gnu: Add r-ggcyto.
* gnu/packages/bioconductor.scm (r-ggcyto): New variable.
2019-12-15 15:38:51 +01:00
Ricardo Wurmus 15ac0c195c
gnu: Add r-ncdfflow.
* gnu/packages/bioconductor.scm (r-ncdfflow): New variable.
2019-12-15 15:38:51 +01:00
Ricardo Wurmus b4aee31dcb
gnu: Add r-cytolib.
* gnu/packages/bioconductor.scm (r-cytolib): New variable.
2019-12-15 15:38:51 +01:00
Ricardo Wurmus b4a22ccaaa
gnu: Add r-multidataset.
* gnu/packages/bioconductor.scm (r-multidataset): New variable.
2019-12-15 15:38:51 +01:00
Ricardo Wurmus e5d722fb4c
gnu: Add r-biocversion.
* gnu/packages/bioconductor.scm (r-biocversion): New variable.
2019-12-15 15:38:51 +01:00
Ricardo Wurmus 8e6f63dd83
gnu: Add r-activepathways.
* gnu/packages/bioconductor.scm (r-activepathways): New variable.
2019-12-14 13:35:53 +01:00
Ricardo Wurmus 72b67e0b36
gnu: Add r-activedriverwgs.
* gnu/packages/bioconductor.scm (r-activedriverwgs): New variable.
2019-12-13 22:41:38 +01:00
Ricardo Wurmus bf770d9240
gnu: r-metap: Update to 1.2.
* gnu/packages/cran.scm (r-metap): Move this from here...
* gnu/packages/bioconductor.scm (r-metap): ...to here and update to 1.2.
[propagated-inputs]: Add r-mutoss and r-tfisher.
2019-12-09 18:11:20 +01:00
Ricardo Wurmus f21147625f
gnu: Add r-mutoss.
* gnu/packages/bioconductor.scm (r-mutoss): New variable.
2019-12-09 18:11:19 +01:00
Ricardo Wurmus 41728d234b
gnu: r-all: Use bioconductor-uri.
* gnu/packages/bioconductor.scm (r-all)[source]: Use bioconductor-uri.
2019-12-04 09:36:34 +01:00
Ricardo Wurmus 545e67ac03
gnu: r-hsmmsinglecell: Use bioconductor-uri.
* gnu/packages/bioconductor.scm (r-hsmmsinglecell)[source]: Use
bioconductor-uri.
2019-12-04 09:36:15 +01:00
Ricardo Wurmus b86f77469b
gnu: r-arrmdata: Use bioconductor-uri.
* gnu/packages/bioconductor.scm (r-arrmdata)[source]: Use bioconductor-uri.
2019-12-04 09:35:59 +01:00
Ricardo Wurmus ced61edf5d
gnu: r-abadata: Use bioconductor-uri.
* gnu/packages/bioconductor.scm (r-abadata)[source]: Use bioconductor-uri.
2019-12-04 09:35:44 +01:00
Ricardo Wurmus eed2766a45
gnu: r-do-db: Use bioconductor-uri.
* gnu/packages/bioconductor.scm (r-do-db)[source]: Use bioconductor-uri.
2019-12-04 09:35:26 +01:00
Ricardo Wurmus 25f567a85a
gnu: r-illuminahumanmethylationepicmanifest: Use bioconductor-uri.
* gnu/packages/bioconductor.scm (r-illuminahumanmethylationepicmanifest)[source]:
Use bioconductor-uri.
2019-12-04 09:35:08 +01:00
Ricardo Wurmus 6aca4054e0
gnu: r-fdb-infiniummethylation-hg19: Use bioconductor-uri.
* gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19)[source]: Use
bioconductor-uri.
2019-12-04 09:34:47 +01:00
Ricardo Wurmus c271d99025
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Use bioconductor-uri.
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:34:13 +01:00
Ricardo Wurmus 1afdf41b49
gnu: r-txdb-mmusculus-ucsc-mm9-knowngene: Use bioconductor-uri.
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene)[source]:
Use bioconductor-uri.
2019-12-04 09:33:54 +01:00
Ricardo Wurmus d78db08862
gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Use bioconductor-uri.
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene)[source]:
Use bioconductor-uri.
2019-12-04 09:33:35 +01:00
Ricardo Wurmus f2580a1385
gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Use bioconductor-uri.
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:33:09 +01:00
Ricardo Wurmus 717d7cda9d
gnu: r-genelendatabase: Use bioconductor-uri.
* gnu/packages/bioconductor.scm (r-genelendatabase)[source]: Use
bioconductor-uri.
2019-12-04 09:32:48 +01:00
Ricardo Wurmus e7a8cf2e6e
gnu: r-bsgenome-hsapiens-ucsc-hg19: Use bioconductor-uri.
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:32:22 +01:00
Ricardo Wurmus 411be88bf3
gnu: r-org-mm-eg-db: Use bioconductor-uri.
* gnu/packages/bioconductor.scm (r-org-mm-eg-db)[source]: Use
bioconductor-uri.
2019-12-04 09:32:03 +01:00
Ricardo Wurmus f53becc6d8
gnu: r-org-hs-eg-db: Use bioconductor-uri.
* gnu/packages/bioconductor.scm (r-org-hs-eg-db)[source]: Use
bioconductor-uri.
2019-12-04 09:31:46 +01:00
Ricardo Wurmus 7bb65a2227
gnu: r-org-dr-eg-db: Use bioconductor-uri.
* gnu/packages/bioconductor.scm (r-org-dr-eg-db)[source]: Use
bioconductor-uri.
2019-12-04 09:31:19 +01:00
Ricardo Wurmus b0dfc79b0d
gnu: r-org-dm-eg-db: Use bioconductor-uri.
* gnu/packages/bioconductor.scm (r-org-dm-eg-db)[source]: Use
bioconductor-uri.
2019-12-04 09:30:58 +01:00
Ricardo Wurmus 1c05e637a4
gnu: r-org-ce-eg-db: Use bioconductor-uri.
* gnu/packages/bioconductor.scm (r-org-ce-eg-db)[source]: Use
bioconductor-uri.
2019-12-04 09:30:35 +01:00
Ricardo Wurmus f83404bc5b
gnu: r-bsgenome-mmusculus-ucsc-mm10: Use bioconductor-uri.
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:29:56 +01:00
Ricardo Wurmus 51dc4a2d70
gnu: r-bsgenome-mmusculus-ucsc-mm9-masked: Use bioconductor-uri.
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked)[source]:
Use bioconductor-uri.
2019-12-04 09:29:26 +01:00