27abca93b1
gnu: r-diffbind: Update to 3.2.1.
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* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.1.
2021-06-05 09:12:45 +02:00
737a228702
gnu: r-greylistchip: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.24.0.
2021-06-05 09:12:45 +02:00
941a868515
gnu: r-apeglm: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.14.0.
2021-06-05 09:12:45 +02:00
371149da6f
gnu: r-qvalue: Update to 2.24.0.
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* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.24.0.
2021-06-05 09:12:45 +02:00
359c350c7d
gnu: r-oligo: Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-oligo): Update to 1.56.0.
2021-06-05 09:12:45 +02:00
2c9c656f47
gnu: r-oligoclasses: Update to 1.54.0.
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* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.54.0.
2021-06-05 09:12:45 +02:00
c68607725b
gnu: r-geneplotter: Update to 1.70.0.
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* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.70.0.
2021-06-05 09:12:45 +02:00
473371dfc1
gnu: r-zlibbioc: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.38.0.
2021-06-05 09:12:45 +02:00
092d2a8d85
gnu: r-xvector: Update to 0.32.0.
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* gnu/packages/bioconductor.scm (r-xvector): Update to 0.32.0.
2021-06-05 09:12:45 +02:00
e4a34df239
gnu: r-vsn: Update to 3.60.0.
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* gnu/packages/bioconductor.scm (r-vsn): Update to 3.60.0.
2021-06-05 09:12:45 +02:00
c73b9d6c66
gnu: r-variantannotation: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.38.0.
2021-06-05 09:12:45 +02:00
2817a8f292
gnu: r-tximport: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-tximport): Update to 1.20.0.
2021-06-05 09:12:45 +02:00
ad6ba3de65
gnu: r-topgo: Update to 2.44.0.
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* gnu/packages/bioconductor.scm (r-topgo): Update to 2.44.0.
2021-06-05 09:12:45 +02:00
7728c5909f
gnu: r-systempiper: Update to 1.26.2.
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* gnu/packages/bioconductor.scm (r-systempiper): Update to 1.26.2.
[propagated-inputs]: Add r-testthat.
2021-06-05 09:12:45 +02:00
81c55df9a8
gnu: r-sva: Update to 3.40.0.
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* gnu/packages/bioconductor.scm (r-sva): Update to 3.40.0.
2021-06-05 09:12:45 +02:00
6eaa9221d9
gnu: r-summarizedexperiment: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.22.0.
2021-06-05 09:12:44 +02:00
8c0f2d9e0a
gnu: r-structuralvariantannotation: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.8.0.
[propagated-inputs]: Add r-rlang.
[native-inputs]: Add r-knitr.
2021-06-05 09:12:44 +02:00
8e0dac09c4
gnu: r-slingshot: Update to 2.0.0.
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* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.0.0.
[propagated-inputs]: Remove r-ape; add r-s4vectors and r-trajectoryutils.
2021-06-05 09:12:44 +02:00
15f371cc89
gnu: r-shortread: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-shortread): Update to 1.50.0.
2021-06-05 09:12:44 +02:00
76edc5ae98
gnu: r-seqpattern: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.24.0.
2021-06-05 09:12:44 +02:00
58ae27d46c
gnu: r-seqlogo: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.58.0.
2021-06-05 09:12:44 +02:00
5ce21e7153
gnu: r-rtracklayer: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.52.0.
[propagated-inputs]: Add r-biocio and r-restfulr.
2021-06-05 09:12:44 +02:00
e22d743aa6
gnu: r-rsamtools: Update to 2.8.0.
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* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.8.0.
2021-06-05 09:12:44 +02:00
f2f4ca7456
gnu: r-rhdf5filters: Update to 1.4.0.
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* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.4.0.
2021-06-05 09:12:44 +02:00
51bee5c40f
gnu: r-reportingtools: Update to 2.32.0.
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* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.32.0.
2021-06-05 09:12:44 +02:00
2da4ee4c77
gnu: r-regioner: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-regioner): Update to 1.24.0.
2021-06-05 09:12:44 +02:00
38fa99c1d0
gnu: r-rcas: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-rcas): Update to 1.18.0.
[propagated-inputs]: Add r-knitr.
2021-06-05 09:12:44 +02:00
7c45bc9391
gnu: r-rbgl: Update to 1.68.0.
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* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.68.0.
2021-06-05 09:12:44 +02:00
dc67525ae6
gnu: r-protgenerics: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.24.0.
2021-06-05 09:12:44 +02:00
0ec6177cc1
gnu: r-pcamethods: Update to 1.84.0.
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* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.84.0.
2021-06-05 09:12:44 +02:00
5d37cee6c1
gnu: r-organismdbi: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.34.0.
2021-06-05 09:12:44 +02:00
00b2174930
gnu: r-mzid: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-mzid): Update to 1.30.0.
2021-06-05 09:12:44 +02:00
d647eb090b
gnu: r-msnbase: Update to 2.18.0.
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* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.18.0.
[propagated-inputs]: Remove r-preprocesscore; add r-mscoreutils.
2021-06-05 09:12:43 +02:00
c966cef2b4
gnu: r-mutationalpatterns: Update to 3.2.0.
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* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.2.0.
2021-06-05 09:12:43 +02:00
0b3fd7e89a
gnu: r-methylkit: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.18.0.
2021-06-05 09:12:43 +02:00
595b75e05c
gnu: r-limma: Update to 3.48.0.
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* gnu/packages/bioconductor.scm (r-limma): Update to 3.48.0.
2021-06-05 09:12:43 +02:00
60b598ee16
gnu: r-keggrest: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.32.0.
2021-06-05 09:12:43 +02:00
2cbb8e19af
gnu: r-interactivedisplaybase: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.30.0.
2021-06-05 09:12:43 +02:00
94b4e64fd0
gnu: r-impute: Update to 1.66.0.
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* gnu/packages/bioconductor.scm (r-impute): Update to 1.66.0.
2021-06-05 09:12:43 +02:00
76fc8a53b2
gnu: r-rhtslib: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-rhtslib): Update to 1.24.0.
2021-06-05 09:12:43 +02:00
78eb1fdf3e
gnu: r-hpar: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-hpar): Update to 1.34.0.
2021-06-05 09:12:43 +02:00
330a7fe3b1
gnu: r-gseabase: Update to 1.54.0.
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* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.54.0.
2021-06-05 09:12:43 +02:00
214e784b57
gnu: r-gostats: Update to 2.58.0.
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* gnu/packages/bioconductor.scm (r-gostats): Update to 2.58.0.
2021-06-05 09:12:43 +02:00
1b44202e20
gnu: r-genomicranges: Update to 1.44.0.
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* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.44.0.
2021-06-05 09:12:43 +02:00
d491b7eb1a
gnu: r-genomicfiles: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.28.0.
2021-06-05 09:12:43 +02:00
62889b9915
gnu: r-genomicfeatures: Update to 1.44.0.
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* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.44.0.
[propagated-inputs]: Add r-biocio.
2021-06-05 09:12:43 +02:00
570e80d62f
gnu: r-genomicalignments: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.28.0.
2021-06-05 09:12:43 +02:00
f88ab81fc7
gnu: r-genomeinfodb: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.28.0.
2021-06-05 09:12:43 +02:00
ef7bbc40de
gnu: r-genomation: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-genomation): Update to 1.24.0.
[propagated-inputs]: Remove r-runit.
2021-06-05 09:12:43 +02:00
3c024e9e96
gnu: r-geneoverlap: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.28.0.
2021-06-05 09:12:42 +02:00
389ce4e42b
gnu: r-genefilter: Update to 1.74.0.
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* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.74.0.
2021-06-05 09:12:42 +02:00
f22f4caa69
gnu: r-gage: Update to 2.42.0.
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* gnu/packages/bioconductor.scm (r-gage): Update to 2.42.0.
2021-06-05 09:12:42 +02:00
ff59b34dc3
gnu: r-fastseg: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.38.0.
2021-06-05 09:12:42 +02:00
6abbb53c3e
gnu: r-ensembldb: Update to 2.16.0.
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* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.0.
2021-06-05 09:12:42 +02:00
bdc1b908d3
gnu: r-edger: Update to 3.34.0.
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* gnu/packages/bioconductor.scm (r-edger): Update to 3.34.0.
2021-06-05 09:12:42 +02:00
f998c95d60
gnu: r-edaseq: Update to 2.26.0.
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* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.26.0.
2021-06-05 09:12:42 +02:00
30ce1f9b66
gnu: r-dirichletmultinomial: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.34.0.
2021-06-05 09:12:42 +02:00
e9445cdd78
gnu: r-dexseq: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.38.0.
2021-06-05 09:12:42 +02:00
45225c60cc
gnu: r-deseq2: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.32.0.
2021-06-05 09:12:42 +02:00
2835e7c0be
gnu: r-copywriter: Update to 2.24.0.
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* gnu/packages/bioconductor.scm (r-copywriter): Update to 2.24.0.
2021-06-05 09:12:42 +02:00
a8cfce4852
gnu: r-complexheatmap: Update to 2.8.0.
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* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.8.0.
[propagated-inputs]: Remove r-s4vectors; add r-doparallel and r-foreach.
2021-06-05 09:12:42 +02:00
d296ac9cde
gnu: r-chipseq: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.42.0.
2021-06-05 09:12:42 +02:00
ca10bafc65
gnu: r-chipseeker: Update to 1.28.3.
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* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.28.3.
[inputs]: Remove r-knitr.
[native-inputs]: Add r-knitr.
2021-06-05 09:12:42 +02:00
336107c13d
gnu: r-category: Update to 2.58.0.
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* gnu/packages/bioconductor.scm (r-category): Update to 2.58.0.
2021-06-05 09:12:42 +02:00
e039d07bf8
gnu: r-bsgenome: Update to 1.60.0.
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* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.60.0.
2021-06-05 09:12:42 +02:00
98f3c55999
gnu: r-biovizbase: Update to 1.40.0.
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* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.40.0.
2021-06-05 09:12:42 +02:00
16fe6abd27
gnu: r-biostrings: Update to 2.60.0.
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* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.60.0.
[propagated-inputs]: Add r-genomeinfodb.
2021-06-05 09:12:42 +02:00
3eedef80e4
gnu: r-biocparallel: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.26.0.
2021-06-05 09:12:41 +02:00
f9ae0a4102
gnu: r-biomart: Update to 2.48.0.
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* gnu/packages/bioconductor.scm (r-biomart): Update to 2.48.0.
[propagated-inputs]: Remove r-openssl and r-xml2; add r-digest.
2021-06-05 09:12:41 +02:00
8be5d4f6fc
gnu: r-biobase: Update to 2.52.0.
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* gnu/packages/bioconductor.scm (r-biobase): Update to 2.52.0.
2021-06-05 09:12:41 +02:00
baaed6fd68
gnu: r-bamsignals: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.24.0.
2021-06-05 09:12:41 +02:00
3e290768c6
gnu: r-aroma-light: Update to 3.22.0.
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* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.22.0.
2021-06-05 09:12:41 +02:00
2071ed58d5
gnu: r-annotationhub: Update to 3.0.0.
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* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.0.0.
2021-06-05 09:12:41 +02:00
4d13cf066d
gnu: r-annotationforge: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.34.0.
2021-06-05 09:12:41 +02:00
361f2f647a
gnu: r-annotationfilter: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.16.0.
2021-06-05 09:12:41 +02:00
c7811ed4bf
gnu: r-annotationdbi: Update to 1.54.0.
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* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.54.0.
[propagated-inputs]: Add r-keggrest.
2021-06-05 09:12:41 +02:00
1bb87755b8
gnu: r-annotate: Update to 1.70.0.
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* gnu/packages/bioconductor.scm (r-annotate): Update to 1.70.0.
2021-06-05 09:12:41 +02:00
308067c09c
gnu: r-affxparser: Update to 1.64.0.
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* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.64.0.
2021-06-05 09:12:41 +02:00
dfeb135ef0
gnu: r-affyio: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-affyio): Update to 1.62.0.
2021-06-05 09:12:41 +02:00
a9083169c6
gnu: r-affycoretools: Update to 1.64.0.
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* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.64.0.
2021-06-05 09:12:41 +02:00
3abb0b6523
gnu: r-affycontam: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.50.0.
2021-06-05 09:12:41 +02:00
bd17befeb1
gnu: r-affycompatible: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.52.0.
2021-06-05 09:12:41 +02:00
b045bf2d6f
gnu: r-affycomp: Update to 1.68.0.
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* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.68.0.
2021-06-05 09:12:41 +02:00
af04e2cc12
gnu: r-affy: Update to 1.70.0.
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* gnu/packages/bioconductor.scm (r-affy): Update to 1.70.0.
2021-06-05 09:12:41 +02:00
60b9546472
gnu: r-iranges: Update to 2.26.0.
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* gnu/packages/bioconductor.scm (r-iranges): Update to 2.26.0.
2021-06-05 09:12:41 +02:00
cfd4c05bd4
gnu: r-ideoviz: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.28.0.
2021-06-05 09:12:40 +02:00
4075ac7287
gnu: r-bluster: Update to 1.2.1.
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* gnu/packages/bioconductor.scm (r-bluster): Update to 1.2.1.
[propagated-inputs]: Add r-cluster.
2021-06-05 09:12:40 +02:00
8eb0c715e3
gnu: r-delayedarray: Update to 0.18.0.
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* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.18.0.
2021-06-05 09:12:40 +02:00
f0f839c124
gnu: r-deepsnv: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.38.0.
[inputs]: Remove zlib.
[native-inputs]: Add r-knitr.
2021-06-05 09:12:40 +02:00
dec096f827
gnu: r-decipher: Update to 2.20.0.
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* gnu/packages/bioconductor.scm (r-decipher): Update to 2.20.0.
[propagated-inputs]: Add r-dbi, r-iranges, r-s4vectors, and r-xvector.
2021-06-05 09:12:40 +02:00
116df58449
gnu: r-cummerbund: Update to 2.34.0.
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* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.34.0.
2021-06-05 09:12:40 +02:00
e6c5d8ce2c
gnu: r-coverageview: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.30.0.
2021-06-05 09:12:40 +02:00
7bac473d06
gnu: r-biocgenerics: Update to 0.38.0.
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* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.38.0.
2021-06-05 09:12:40 +02:00
b05761a5a9
gnu: r-biocversion: Update to 3.13.1.
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* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.13.1.
2021-06-05 09:12:40 +02:00
405b386656
gnu: r-aneufinder: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.20.0.
2021-06-05 09:12:40 +02:00
75817956c1
gnu: r-hdf5array: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.20.0.
[arguments]: Remove.
[propagated-inputs]: Add r-rhdf5filters.
2021-06-05 09:12:40 +02:00
bfa23ec526
gnu: r-cytoml: Update to 2.4.0.
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* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.4.0.
[arguments]: Remove.
2021-06-05 09:12:40 +02:00
764e2dba20
gnu: r-flowworkspace: Update to 4.4.0.
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* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.4.0.
[arguments]: Remove.
[propagated-inputs]: Add r-delayedarray and r-s4vectors.
2021-06-05 09:12:40 +02:00
b9751b629c
gnu: r-ncdfflow: Update to 2.38.0.
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* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.38.0.
[arguments]: Remove.
2021-06-05 09:12:40 +02:00
5c37a048bb
gnu: r-cytolib: Update to 2.4.0.
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* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.4.0.
[arguments]: Remove.
[native-inputs]: Remove pkg-config.
2021-06-05 09:12:40 +02:00
782d27f77d
gnu: r-rhdf5: Update to 2.36.0.
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* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.36.0.
[arguments]: Remove.
2021-06-05 09:12:40 +02:00
87d06a725f
gnu: r-mzr: Update to 2.26.0.
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* gnu/packages/bioconductor.scm (r-mzr): Update to 2.26.0.
[arguments]: Remove obsolute substitution.
2021-06-05 09:12:40 +02:00
5d13aab6ca
gnu: r-msnid: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-msnid): Update to 1.26.0.
[arguments]: Set HOME variable.
2021-06-05 09:12:40 +02:00
d0a7dc0cb6
gnu: r-bioccheck: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.28.0.
[arguments]: Remove.
2021-06-05 09:12:39 +02:00
1b0338d76b
gnu: r-rhdf5lib: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.14.0.
[source]: Update deletions.
[arguments]: Update substitutions.
[inputs]: Move zlib from here...
[propagated-inputs]: ...to here.
2021-06-05 09:12:39 +02:00
53ec97713a
gnu: Add r-metapod.
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* gnu/packages/bioconductor.scm (r-metapod): New variable.
2021-06-05 09:12:39 +02:00
8caab75883
gnu: Add r-ggtree.
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* gnu/packages/bioconductor.scm (r-ggtree): New variable.
2021-06-05 09:12:39 +02:00
ab4a91b252
gnu: Add r-treeio.
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* gnu/packages/bioconductor.scm (r-treeio): New variable.
2021-06-05 09:12:39 +02:00
fd4fa40ac4
gnu: Add r-scaledmatrix.
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* gnu/packages/bioconductor.scm (r-scaledmatrix): New variable.
2021-06-05 09:12:39 +02:00
efefb2be3a
gnu: Add r-trajectoryutils.
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* gnu/packages/bioconductor.scm (r-trajectoryutils): New variable.
2021-06-05 09:12:39 +02:00
ce99b4da63
gnu: Add r-restfulr.
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* gnu/packages/bioconductor.scm (r-restfulr): New variable.
2021-06-05 09:12:39 +02:00
8cc146b24a
gnu: r-bisquerna: Update to 1.0.5.
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* gnu/packages/bioconductor.scm (r-bisquerna): Update to 1.0.5.
[native-inputs]: Add r-knitr.
2021-06-02 17:27:07 +02:00
ec543ba672
gnu: r-chipseeker: Move out of experiment section.
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* gnu/packages/bioconductor.scm (r-chipseeker): Move the package from the
"experiment" section to the section for regular Bioconductor packages.
2021-05-31 15:54:41 +02:00
a6e7afd4d5
gnu: r-spp: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-spp): Move from here...
* gnu/packages/bioconductor.scm (r-spp): ...to here.
2021-05-31 15:53:20 +02:00
1a6108ce2b
gnu: r-geneoverlap: Move out of experiment section.
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* gnu/packages/bioconductor.scm (r-geneoverlap): Move the package definition
out of the "experiment" section into the section for regular Bioconductor
packages.
2021-05-31 15:53:09 +02:00
c294c0d782
gnu: r-methylkit: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-methylkit): Move from here...
* gnu/packages/bioconductor.scm (r-methylkit): ...to here.
2021-05-31 15:39:49 +02:00
7ab44aeed6
gnu: r-copywriter: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-copywriter): Move from here...
* gnu/packages/bioconductor.scm (r-copywriter): ...to here.
2021-05-31 15:39:49 +02:00
36cb01066c
gnu: r-copyhelper: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-copyhelper): Move from here...
* gnu/packages/bioconductor.scm (r-copyhelper): ...to here.
[source]: Repalce 'string-append' by 'bioconductor-uri' with 'experiment.
2021-05-31 15:39:47 +02:00
31e50e1f48
gnu: r-chipseq: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-chipseq): Move from here...
* gnu/packages/bioconductor.scm (r-chipseq): ...to here.
2021-05-31 15:39:00 +02:00
0eaa75c811
gnu: r-rhdf5: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-rhdf5): Move from here...
* gnu/packages/bioconductor.scm (r-rhdf5): ...to here.
2021-05-31 15:39:00 +02:00
cc1dbea883
gnu: r-annotationfilter: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-annotationfilter): Move from here...
* gnu/packages/bioconductor.scm (r-annotationfilter): ...to here.
2021-05-31 15:39:00 +02:00
67e99369c1
gnu: r-rhdf5filters: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-rhdf5filters): Move from here...
* gnu/packages/bioconductor.scm (r-rhdf5filters): ...to here.
2021-05-31 15:39:00 +02:00
b6e84d30eb
gnu: r-tximport: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-tximport): Move from here...
* gnu/packages/bioconductor.scm (r-tximport): ...to here.
2021-05-31 15:39:00 +02:00
bf8f502956
gnu: r-mutationalpatterns: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Move from here...
* gnu/packages/bioconductor.scm (r-mutationalpatterns): ...to here.
2021-05-31 15:39:00 +02:00
7360dea624
gnu: r-rcas: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-rcas): Move from here...
* gnu/packages/bioconductor.scm (r-rcas): ...to here.
2021-05-31 15:39:00 +02:00
45b6db4fb4
gnu: r-bamsignals: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-bamsignals): Move from here...
* gnu/packages/bioconductor.scm (r-bamsignals): ...to here.
2021-05-31 15:38:59 +02:00
043c309d15
gnu: r-rhtslib: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-rhtslib): Move from here...
* gnu/packages/bioconductor.scm (r-rhtslib): ...to here.
2021-05-31 15:38:59 +02:00
e0c81584ea
gnu: r-zlibbioc: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-zlibbioc): Move from here...
* gnu/packages/bioconductor.scm (r-zlibbioc): ...to here.
2021-05-31 15:38:58 +02:00
0006a66415
gnu: r-seqlogo: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-seqlogo): Move from here...
* gnu/packages/bioconductor.scm (r-seqlogo): ...to here.
2021-05-31 15:38:21 +02:00
c2a18aee16
gnu: r-motifrg: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-motifrg): Move from here...
* gnu/packages/bioconductor.scm (r-motifrg): ...to here.
2021-05-31 15:38:00 +02:00
621aa3b442
gnu: r-sva: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-sva): Move from here...
* gnu/packages/bioconductor.scm (r-sva): ...to here.
2021-05-31 15:38:00 +02:00
900ef8fb1e
gnu: r-protgenerics: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-protgenerics): Move from here...
* gnu/packages/bioconductor.scm (r-protgenerics): ...to here.
2021-05-31 15:38:00 +02:00
720d2694a5
gnu: r-mzr: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-mzr): Move from here...
* gnu/packages/bioconductor.scm (r-mzr): ...to here.
2021-05-31 15:38:00 +02:00
88cf24febb
gnu: r-ensembldb: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-ensembldb): Move from here...
* gnu/packages/bioconductor.scm (r-ensembldb): ...to here.
2021-05-31 15:37:59 +02:00
fea33b9d1e
gnu: r-biovizbase: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-biovizbase): Move from here...
* gnu/packages/bioconductor.scm (r-biovizbase): ...to here.
2021-05-31 15:37:59 +02:00
8d4311bb8e
gnu: r-vsn: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-vsn): Move from here...
* gnu/packages/bioconductor.scm (r-vsn): ...to here.
2021-05-31 15:37:59 +02:00
96ae9822c4
gnu: r-affyio: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-affyio): Move from here...
* gnu/packages/bioconductor.scm (r-affyio): ...to here.
2021-05-31 15:37:59 +02:00
8182e6a6fd
gnu: r-organismdbi: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-organismdbi): Move from here...
* gnu/packages/bioconductor.scm (r-organismdbi): ...to here.
2021-05-31 15:37:59 +02:00
d1ea2b7c8b
gnu: r-dirichletmultinomial: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Move from here...
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): ...to here.
2021-05-31 15:37:59 +02:00
0b5b41c561
gnu: r-genomicfiles: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-genomicfiles): Move from here...
* gnu/packages/bioconductor.scm (r-genomicfiles): ...to here.
2021-05-31 15:37:59 +02:00
ff65fa90d2
gnu: r-complexheatmap: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-complexheatmap): Move from here...
* gnu/packages/bioconductor.scm (r-complexheatmap): ...to here.
2021-05-31 15:37:59 +02:00
84019edf38
gnu: r-gage: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-gage): Move from here...
* gnu/packages/bioconductor.scm (r-gage): ...to here.
2021-05-31 15:37:59 +02:00
d0a5503752
gnu: r-keggrest: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-keggrest): Move from here...
* gnu/packages/bioconductor.scm (r-keggrest): ...to here.
2021-05-31 15:37:58 +02:00
22cda2e432
gnu: r-affy: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-affy): Move from here...
* gnu/packages/bioconductor.scm (r-affy): ...to here.
2021-05-31 15:37:58 +02:00
32ae36e96f
gnu: r-fastseg: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-fastseg): Move from here...
* gnu/packages/bioconductor.scm (r-fastseg): ...to here.
2021-05-31 15:37:58 +02:00
9644745692
gnu: r-annotationhub: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-annotationhub): Move from here...
* gnu/packages/bioconductor.scm (r-annotationhub): ...to here.
2021-05-31 15:37:58 +02:00
dfe6224f5f
gnu: r-interactivedisplaybase: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Move from here...
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): ...to here.
2021-05-31 15:37:58 +02:00
f6f43a2d40
gnu: r-edaseq: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-edaseq): Move from here...
* gnu/packages/bioconductor.scm (r-edaseq): ...to here.
2021-05-31 15:37:58 +02:00
ef954bb488
gnu: r-deseq: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-deseq): Move from here...
* gnu/packages/bioconductor.scm (r-deseq): ...to here.
2021-05-31 15:37:58 +02:00
bb118f20fe
gnu: r-aroma-light: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-aroma-light): Move from here...
* gnu/packages/bioconductor.scm (r-aroma-light): ...to here.
2021-05-31 15:37:58 +02:00
Ricardo Wurmus
zimoun