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139933 Commits (33ec096ca55f2d3cc42bb4e948ca1621878ba264)

Author SHA1 Message Date
Sharlatan Hellseher 33ec096ca5
gnu: python-stpipe: Update to 0.6.0. 
* gnu/packages/astronomy.scm (python-stpipe): Update to 0.6.0.

Change-Id: I381ba0d90aeb78055669c3d063bc82ae54ad42df
 2024-07-30 10:30:46 +01:00
Sharlatan Hellseher 77c8bff0ea
gnu: python-pytest-openfiles: Simplify package. 
* gnu/packages/python-check.scm (python-pytest-openfiles)
[build-system]: Swap to pyproject-build-system.
[arguments]: <#:phases>: Use default 'chck phase.

Change-Id: I3bbbacd8694afdfee020f11d37f5c035bdad73f9
 2024-07-30 10:30:46 +01:00
Sharlatan Hellseher 66c1a004ac
gnu: python-pytest-openfiles: Update to 0.6.0. 
* gnu/packages/python-check.scm (python-pytest-openfiles): Update to 0.6.0.

Change-Id: I629c0b1ad56c313a850cbca6f58e66bb1d9920d7
 2024-07-30 10:30:46 +01:00
Sharlatan Hellseher 57622749ca
gnu: python-extension-helpers: Enable tests. 
* gnu/packages/python-xyz.scm (python-extension-helpers): Adjust
indentation.
[source]: Swap to git checkout which contains tests.
[arguments]: <#:tests-flags>: Disable one failing tests.
<#:phases>: Add 'set-version phase. Use custom 'check phase.
[native-inputs]: Remove python-coverage. Add python-tomli.

Change-Id: I8a04811e43bc0f1c2e0761aca87c4888a1444fc1
 2024-07-30 10:30:46 +01:00
Sharlatan Hellseher 5e63cf0acc
gnu: python-extension-helpers: Update to 1.1.1. 
* gnu/packages/python-xyz.scm (python-extension-helpers): Update to 1.1.1.

Change-Id: Ia5fa0b445232314134d0127add75fcf2082bbc59
 2024-07-30 10:30:46 +01:00
Sharlatan Hellseher 7c89281e3b
gnu: python-photutils: Update to 1.13.0. 
* gnu/packages/astronomy.scm (python-photutils): Update to 1.13.0.
[native-inputs]: Remove python-cython; add python-cython-3.

Change-Id: Id73418fc2324882055015fb2bb2664b00b38a1a3
 2024-07-30 10:30:46 +01:00
Sharlatan Hellseher 695a3ba8e7
gnu: python-jwst: Update to 1.15.1. 
* gnu/packages/astronomy.scm (python-jwst): Update to 1.15.1.

Change-Id: I19b2c0eb1a27857c5df1b2c356248c279adeab81
 2024-07-30 10:30:46 +01:00
Sharlatan Hellseher 087ec72e15
gnu: python-czml3: Adjust indentation. 
* gnu/packages/astronomy.scm (python-czml3): Adjust indentation.

Change-Id: I28fefff7cec5d6c1d69ce4b760da607289ce6e1e
 2024-07-30 10:30:46 +01:00
Sharlatan Hellseher 825754d07c
gnu: python-czml3: Update to 1.0.1. 
* gnu/packages/astronomy.scm (python-czml3): Update to 1.0.1.

Change-Id: Ib9d21c24befcebb81455dafd4563570b97570613
 2024-07-30 10:30:46 +01:00
Sharlatan Hellseher 2f7926dd36
gnu: python-crds: Update to 11.17.26. 
* gnu/packages/astronomy.scm (python-crds): Update to 11.17.26.

Change-Id: Ifdee55f01db207bb36d8e408d393d51865927579
 2024-07-30 10:30:46 +01:00
Sharlatan Hellseher dc7cca9fef
gnu: python-astropy-iers-data: Update to 0.2024.7.15.0.31.42. 
* gnu/packages/astronomy.scm (python-astropy-iers-data): Update to 0.2024.7.15.0.31.42.

Change-Id: I14116d99a5852b389e1b7695c479a6a98c86f8fd
 2024-07-30 10:30:45 +01:00
Sharlatan Hellseher a0e804c2db
gnu: python-asdf-zarr: Update to 0.0.4. 
* gnu/packages/astronomy.scm (python-asdf-zarr): Update to 0.0.4.

Change-Id: I4bb166d2b2c89d9159a52da91ea581a0c41614e1
 2024-07-30 10:30:45 +01:00
Sharlatan Hellseher 4e51c1d35f
gnu: python-asdf: Update to 3.3.0. 
* gnu/packages/astronomy.scm (python-asdf): Update to 3.3.0.
[native-inputs]: Remove python-pytest; add python-pytest-8.

Change-Id: Ia2d284156553741dea8cd5481840a79bb18d5f8e
 2024-07-30 10:30:45 +01:00
Sharlatan Hellseher ef84b88b20
gnu: stellarium: Update to 24.2. 
* gnu/packages/astronomy.scm (stellarium): Update to 24.2.

Change-Id: I316fee7463b9185fa264fdcd68e55f424b2d8f32
 2024-07-30 10:30:45 +01:00
Sharlatan Hellseher f815519759
gnu: skymaker: Fix indentation. 
* gnu/packages/astronomy.scm (skymaker): Fix indentation.

Change-Id: I2eeecb451d3da7004794ba55f687a2630ef20bcd
 2024-07-30 10:30:45 +01:00
Sharlatan Hellseher 234bcc8fd6
gnu: skymaker: Update to 3.10.5. 
* gnu/packages/astronomy.scm (skymaker): Update to 3.10.5.

Change-Id: Ib66f35834bdf3d6ce7d1b6924415a3e49b3ae7f9
 2024-07-30 10:30:45 +01:00
Sharlatan Hellseher b5de40f04b
gnu: cfitsio: Update to 4.4.1. 
* gnu/packages/astronomy.scm (cfitsio): Update to 4.4.1.

Change-Id: Ia589fb141192b59ee5e422a8106da89dff931e85
 2024-07-30 10:30:45 +01:00
Sharlatan Hellseher b5c33f99e3
gnu: Add python-pytest-8. 
* gnu/packages/check.scm (python-pytest-8): New variable.

Change-Id: Ie584a48a2749cc7b196e373fe4e6e08f47165620
 2024-07-30 10:30:45 +01:00
Sharlatan Hellseher 99b292a653
gnu: Add python-pluggy-next. 
* gnu/packages/python-build.scm (python-pluggy-next): New variable.

Change-Id: If3ec3f930a799df9602db71112a6c6a5272b524c
 2024-07-30 10:30:38 +01:00
Zheng Junjie 4e92ed625f
gnu: bwa,bwa-pssm: Improve package style. 
* gnu/packages/bioinformatics.scm (bwa)[arguments]: Use G-expression.
(bwa-pssm)[arguments]: Use G-expression.

Change-Id: I63dd0f13f337fbf84967f1ef1b6332ce3391ae97
 2024-07-30 15:57:44 +08:00
Zheng Junjie 18a69ddbf3
gnu: bwa: Fix cross-compiling. 
* gnu/packages/bioinformatics.scm (bwa)[arguments]<#:make-flags>: Use
CC-FOR-TARGET.

Change-Id: I63dd0f13f337fbf84967f1ef1b6332ce3391ae97
 2024-07-30 15:53:58 +08:00
Spencer King 471c4322df
gnu: bwa: Update to 0.7.18. 
* gnu/packages/bioinformatics.scm (bwa): Update to 0.7.18.
[source]: Switch to git-fetch.
[supported-systems]: Add aarch64-linux.

Change-Id: I63dd0f13f337fbf84967f1ef1b6332ce3391ae97
 2024-07-30 15:44:36 +08:00
Tomas Volf 6efd02551d
gnu: skopeo: Update to 1.16.0. 
* gnu/packages/virtualization.scm (skopeo): Update to 1.16.0.
[arguments]<#:phases>: Delete the `cc-to-gcc' phase.

Change-Id: I35a91219c3c920f37f496df6322ae1e40fa1ccc3
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-07-30 14:50:14 +08:00
Ashish SHUKLA 3e4e1aa99b
gnu: ddcci-driver-linux: Update to 0.4.5. 
* gnu/packages/linux.scm (ddcci-driver-linux): Update to 0.4.5.
[source]: Remove already upstream patch.

* gnu/packages/patches/ddcci-driver-linux-6.8.patch: Remove it.
* gnu/local.mk: Unregister it.

Change-Id: I1d4920ec84ea2a67554560181e99e9e2d535af2a
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-07-30 14:40:40 +08:00
Ashish SHUKLA be46349a4e
gnu: yambar-wayland: Enable pulseaudio module. 
* gnu/packages/wm.scm (yambar-wayland)[inputs]: Add pulseaudio.

Change-Id: I1d4933ef10557ed06b9f00f21b466a4ea19be910
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-07-30 14:40:40 +08:00
Ashish SHUKLA via Guix-patches via f2d5e04c3a
gnu: weechat-wee-slack: Update to 2.10.2. 
* gnu/packages/messaging.scm (weechat-wee-slack): Update to 2.10.2.

Change-Id: I2a5f0d4989fb9841016fcf8c3ab4411d837220c6
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-07-30 14:40:40 +08:00
Wilko Meyer a22098c943
gnu: Add drm-info. 
* gnu/packages/freedesktop.scm (drm-info): New variable.

Change-Id: I02a0bdcbb49644de9884038cd36bf6d8482f84ae
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-07-30 14:40:40 +08:00
Tomas Volf c80e8aed74
gnu: buildah: Update to 1.37.0. 
* gnu/packages/containers.scm (buildah): Update to 1.37.0.

Change-Id: I2717b8ebbd63c40938c90b2821c199d2025b849c
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-07-30 14:40:40 +08:00
Zheng Junjie 1db794104f
gnu: ftxui: Update to 5.0.0. 
* gnu/packages/cpp.scm (ftxui): Update to 5.0.0.

Change-Id: I5a1d0170c9d44426fb76eb00296af644fa7d8c16
 2024-07-30 14:40:36 +08:00
Wilko Meyer 4f68605d56
gnu: linux-libre 6.1: Update to 6.1.101. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.101.
(linux-libre-6.1-pristine-source): Update hash.

Change-Id: Ia489adca9b27b469e777726c20ccb373c6d6aab4
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-07-29 23:20:06 -04:00
Wilko Meyer 9a3c1b8118
gnu: linux-libre 6.6: Update to 6.6.42. 
* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.42.
(linux-libre-6.6-pristine-source): Update hash.

Change-Id: I898fab9f04f71f6cdc759315f7fd4e5d28e8d710
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-07-29 23:20:05 -04:00
Wilko Meyer 1e407ed2ba
gnu: linux-libre 6.9: Update to 6.9.11. 
* gnu/packages/linux.scm (linux-libre-6.9-version): Update to 6.9.11.
(linux-libre-6.9-pristine-source): Update hash.

Change-Id: I1a400cd4abecca2e1c6344353ede1e7b5be75d7b
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-07-29 23:20:05 -04:00
Wilko Meyer 93e19067b4
gnu: Add linux-libre 6.10.1. 
* gnu/packages/linux.scm (linux-libre-6.10-version, linux-libre-6.10-gnu-revision,
deblob-scripts-6.10, linux-libre-6.10-pristine-source, linux-libre-6.10-source,
linux-libre-headers-6.10, linux-libre-6.10): New variables.
* gnu/packages/aux-files/linux-libre/6.10-arm.conf,
gnu/packages/aux-files/linux-libre/6.10-arm64.conf,
gnu/packages/aux-files/linux-libre/6.10-i686.conf,
gnu/packages/aux-files/linux-libre/6.10-x86.conf: New files.
* Makefile.am (AUX_FILES): Add them.

Change-Id: If62ec2e8029ebd7531d3b4ba9a666c0b5f3b0f4c
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-07-29 23:20:04 -04:00
Leo Famulari 859d1245b4
gnu: dwarves: Update to 1.27. 
* gnu/packages/linux.scm (dwarves): Update to 1.27.

Change-Id: Id986fdd240a6619544ff6be93cce00afd9fc31bd
 2024-07-29 23:20:04 -04:00
Vinicius Monego f093ea3f2e
gnu: Add python-motulator. 
* gnu/packages/engineering.scm (python-motulator): New variable.

Change-Id: I96af42be634a4ceaffe011d81177d42d48616eb2
Signed-off-by: jgart <jgart@dismail.de>
 2024-07-29 13:48:50 -05:00
Vinicius Monego fdc6274de5
gnu: python-celery: Update to 5.4.0. 
* gnu/packages/python-xyz.scm (python-celery): Update to 5.4.0.
[native-inputs]: Add python-google-cloud-storage.

Change-Id: I9ddb215661491deaab0d8dc31207cd3043637d21
 2024-07-28 11:00:53 -03:00
Vinicius Monego a268e94bf2
gnu: python-arviz: Update to 0.19.0. 
* gnu/packages/statistics.scm (python-arviz): Update to 0.19.0.

Change-Id: Ia42eb00424e77e47e315842313d0ea3759102eab
 2024-07-28 11:00:53 -03:00
Vinicius Monego 731241c367
gnu: xonsh: Update to 0.18.2. 
* gnu/packages/shells.scm (xonsh): Update to 0.18.2.
[source](snippet): Adjust substitution filenames and delete the vendored ply
package.
[arguments]<#:test-flags>: Skip new failing test.

Change-Id: I9a975c9ab200075cbbfe6daf1892c33cb5c3a624
 2024-07-28 11:00:37 -03:00
Vinicius Monego ed882ad668
gnu: python-pyro-ppl: Simplify inputs. 
* gnu/packages/machine-learning.scm (python-pyro-ppl)[native-inputs]: Remove
ninja, jupyter, python-black, python-flake8, python-graphviz, python-isort,
python-lap, python-matplotlib, python-mypy, python-nbformat, python-nbsphinx,
python-nbstripout, python-nbval, python-pandas, python-pillow,
python-pypandoc, python-pytest, python-pytest-cov, python-pytest-xdist,
python-scikit-learn, python-scipy, python-seaborn, python-sphinx,
python-sphinx-rtd-theme, python-torchvision, python-visdom, python-wget,
python-yapf.

Change-Id: Id7a413fdbdd8a808dffb4804c8a7f04bf2c31bbc
 2024-07-28 10:59:48 -03:00
Vinicius Monego 22e8880ae2
gnu: python-pyro-ppl: Update to 1.9.1. 
* gnu/packages/machine-learning.scm (python-pyro-ppl): Update to 1.9.1.
[arguments]: Remove #:test-flags and skip all tests in #:tests?.

Change-Id: If90024d904bb830df2868423a5947ecaf45b46fc
 2024-07-28 10:59:04 -03:00
Vinicius Monego 2b40c6985a
gnu: python-botorch: Update to 0.11.3. 
* gnu/packages/machine-learning.scm (python-botorch): Update to 0.11.3.
[arguments]<#:test-flags>: Skip a failing test.
<#:phases>: Delete the 'lo-version phase.

Change-Id: I110631da8c5e442eaf00daa1b42caff29d61b36b
 2024-07-28 10:49:17 -03:00
Vinicius Monego 92993da382
gnu: ngspice: Enable tests. 
* gnu/packages/engineering.scm (ngspice)[arguments]: Pass #t to #:tests?.
[native-inputs]: Add perl.

Change-Id: I209999b5685865e9c7a17106da8ffab9fad1367b
 2024-07-28 10:49:17 -03:00
Vinicius Monego 0c3fd900cf
gnu: libngspice, ngspice: Improve package style. 
* gnu/packages/engineering.scm (libngspice, ngspice): Reformat packages using
'guix style'.
[arguments]: Use G-Expressions.

Change-Id: I59efa6a78797c2dc2a960ce0be74b2a7381d6d4c
 2024-07-28 10:49:17 -03:00
Vinicius Monego bd03b42d91
gnu: libngspice, ngspice: Update to 43. 
* gnu/packages/engineering.scm (libngspice, ngspice): Update to 43.
(libngspice)[arguments]<#:phases>: Delete the 'patch-timestamps and
'delete-program-manuals phases.
(ngspice)[arguments]<#:phases>: Delete the 'delete-include-files phase.
Remove the line that deletes the now deleted 'delete-program-manuals phase.

These substitutions do not apply anymore.

Change-Id: Ie7ec8dd0998df38828e2e0af226158922e34ea09
 2024-07-28 10:49:17 -03:00
Vinicius Monego b556eee0f1
gnu: Add emacs-org-remark. 
* gnu/packages/emacs-xyz.scm (emacs-org-remark): New variable.

Change-Id: If7c5cca824f9b9a0c3f7fb0d39d0f73f0fe52460
 2024-07-28 10:49:15 -03:00
Sören Tempel 46a64c7fdd
gnu: klee-uclibc: Only build on x86_64 Linux. 
* gnu/packages/check.scm (klee-uclibc): Add supported-systems.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-07-27 17:53:02 +02:00
Sören Tempel ed726598fc
gnu: klee: Only build on x86_64 Linux. 
* gnu/packages/check.scm (klee): Add supported-systems.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-07-27 17:53:02 +02:00
Sören Tempel 842517477b
gnu: klee: Only strip bin directory. 
This avoid several warnings to be emitted by strip(1) when attempting
to strip .bca (i.e. LLVM bitcode) files shipped in /lib/klee/runtime/.

* gnu/packages/check.scm (klee): Set #:strip-directories.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-07-27 17:53:02 +02:00
Sören Tempel 187b6df6f1
gnu: klee: Enable the test suite. 
* gnu/packages/check.scm (klee): Enable all tests.
[arguments]: Patch lit configuration and set #:test-target.
<#:configure-flags?>: Enable system and unit tests, configure gtest.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-07-27 17:53:02 +02:00
Sören Tempel 661d5eeb8e
gnu: klee: Wrap klee-stats for Python dependencies. 
* gnu/packages/check.scm (klee): Wrap klee-stats.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-07-27 17:53:01 +02:00