Ricardo Wurmus
|
7337615d1c
|
gnu: r-bgx: Update to 1.54.1.
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.54.1.
|
2020-10-06 13:23:38 +02:00 |
|
Ricardo Wurmus
|
40b86e20eb
|
gnu: r-xcms: Update to 3.10.2.
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.10.2.
|
2020-10-06 13:23:38 +02:00 |
|
Ricardo Wurmus
|
56bca8965a
|
gnu: r-atacseqqc: Update to 1.12.5.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.12.5.
|
2020-10-06 13:23:37 +02:00 |
|
Ricardo Wurmus
|
f000fab88f
|
gnu: r-gosemsim: Update to 2.14.2.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.14.2.
|
2020-10-06 13:23:37 +02:00 |
|
Ricardo Wurmus
|
d7314e4747
|
gnu: r-karyoploter: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.14.1.
|
2020-10-06 13:23:37 +02:00 |
|
Ricardo Wurmus
|
dce2d06fcc
|
gnu: r-diffbind: Update to 2.16.2.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.16.2.
|
2020-10-06 13:23:34 +02:00 |
|
Ricardo Wurmus
|
d7cfdc1229
|
gnu: r-fhtest: Update to 1.5.
* gnu/packages/bioconductor.scm (r-fhtest): Update to 1.5.
|
2020-10-06 00:34:56 +02:00 |
|
Ricardo Wurmus
|
65e361f98f
|
gnu: r-interval: Update to 1.1-0.7.
* gnu/packages/bioconductor.scm (r-interval): Update to 1.1-0.7.
|
2020-10-06 00:34:56 +02:00 |
|
Ricardo Wurmus
|
5412da848e
|
gnu: r-activedriverwgs: Update to 1.1.1.
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.1.1.
|
2020-10-06 00:34:56 +02:00 |
Efraim Flashner
|
1628d57bb5
|
gnu: Fix package references.
* gnu/packages/algebra.scm (iml)[inputs]: Correctly refer to package
inputs.
* gnu/packages/astronomy.scm (xplanet),
* gnu/packages/audio.scm (redkite, libaudec, lv2lint, lv2toweb),
* gnu/packages/bioconductor.scm (r-cummerbund),
* gnu/packages/chicken.scm (chicken),
* gnu/packages/conky.scm (conky),
* gnu/packages/cran.scm (r-latex2exp),
* gnu/packages/crates-io.scm (rust-rgb),
* gnu/packages/databases.scm (mariadb),
* gnu/packages/diffoscope.scm (reprotest),
* gnu/packages/file-systems.scm (glusterfs),
* gnu/packages/finance.scm (electron-cash),
* gnu/packages/games.scm (rinutils, ksudoku, kdiamond, kigo),
* gnu/packages/geo.scm (grass),
* gnu/packages/gnome.scm (libmediaart, gnome-contacts, geoclue),
* gnu/packages/gnucash.scm (aqbanking),
* gnu/packages/image.scm (mtpaint),
* gnu/packages/kde-internet.scm (kopete, ktorrent),
* gnu/packages/kde-utils.scm (kmousetool, kmouth, kronometer),
* gnu/packages/linphone.scm (liblinphone),
* gnu/packages/maths.scm (ppl),
* gnu/packages/mercury.scm (mercury-minimal),
* gnu/packages/music.scm (bjumblr, bschaffl, lsp-plugins,
spectacle-analyzer, helm, tap-lv2, wolf-shaper, shiru-lv2),
* gnu/packages/networking.scm (restinio),
* gnu/packages/prolog.scm (swi-prolog),
* gnu/packages/python-web.scm (gunicorn),
* gnu/packages/python-xyz.scm (python-docusign-esign),
* gnu/packages/ruby.scm (ruby-cucumber, ruby_version, ruby-addressable),
* gnu/packages/sagemath.scm (python-cypari2),
* gnu/packages/skarnet.scm (s6-linux-init),
* gnu/packages/vpn.scm (sshuttle),
* gnu/packages/web.scm (libcyaml),
* gnu/packages/xdisorg.scm (kbdd),
* gnu/packages/xorg.scm (xpra): Same.
|
2020-09-30 09:28:26 +03:00 |
Roel Janssen
|
871539f3ad
|
gnu: r-chippeakanno: Update to 3.22.4.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.22.4.
|
2020-09-28 17:06:56 +02:00 |
Tobias Geerinckx-Rice
|
7230f6d5dd
|
gnu: Fix typoes in package descriptions.
* gnu/packages/audio.scm (caps-plugins-lv2)[synopsis]: Fix typo.
* gnu/packages/bioconductor.scm (r-karyoploter, r-anota, r-gcrma)
(r-bigmemoryextras)[description]: Likewise.
* gnu/packages/cran.scm (r-geometry)[synopsis]: Likewise.
(r-stringdist, r-patchwork, r-depth, r-tea)[description]: Likewise.
* gnu/packages/crates-io.scm (rust-assert-fs-0.11, rust-notify-4)
(rust-tokio-fs-0.1)[synopsis, description]: Likewise.
(rust-blas-sys-0.7)[description]: Likewise.
(rust-fs-extra-1.1, rust-xattr-0.2)[synopsis]: Likewise.
* gnu/packages/databases.scm (perl-mysql-config)[description]: Likewise.
* gnu/packages/disk.scm (hddtemp)[description]: Likewise.
* gnu/packages/django.scm (python-djangorestframework)[description]:
Likewise.
* gnu/packages/documentation.scm (doc++)[description]: Likewise.
* gnu/packages/emacs-xyz.scm (emacs-kakoune, emacs-pyim-basedict, eless)
(emacs-scpaste)[description]: Likewise.
* gnu/packages/file-systems.scm (dbxfs)[description]: Likewise.
* gnu/packages/finance.scm (python-stdnum)[description]: Likewise.
* gnu/packages/fontutils.scm (woff2)[description]: Likewise.
* gnu/packages/games.scm (openttd-opengfx)[description]: Likewise.
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-topicons-redux)
[description]: Likewise.
* gnu/packages/gnome.scm (libgrss)[description]: Likewise.
* gnu/packages/golang.scm (go-github-com-mitchellh-reflectwalk)
[description]: Likewise.
(go-github-com-go-git-go-billy)[synopsis, description]: Likewise.
* gnu/packages/haskell-check.scm (ghc-inspection-testing)[description]:
Likewise.
* gnu/packages/haskell-web.scm (ghc-yesod-form)[description]: Likewise.
* gnu/packages/haskell-xyz.scm (ghc-hex)[description]: Likewise.
* gnu/packages/hyperledger.scm (hyperledger-iroha-ed25519)[description]:
Likewise.
* gnu/packages/java.scm (java-mail)[synopsis]: Likewise.
(java-native-access-platform)[description]: Likewise.
* gnu/packages/kde-frameworks.scm (kactivities-stats)[description]:
Likewise.
* gnu/packages/kde-utils.scm (krusader)[description]: Likewise.
* gnu/packages/language.scm (praat)[description]: Likewise.
* gnu/packages/linux.scm (light)[description]: Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-hu.dwim.defclass-star)[description]:
Likewise.
* gnu/packages/mail.scm (dovecot-trees, sieve-connect)[description]:
Likewise.
* gnu/packages/ocaml.scm (ocaml-opam-file-format, ocaml-cppo)
(ocaml4.07-ppx-variants-conv)[description]: Likewise.
* gnu/packages/perl.scm (perl-convert-binhex)[description]: Likewise.
* gnu/packages/python-crypto.scm (python-ecdsa)[description]: Likewise.
* gnu/packages/python-web.scm (python-html5lib)[synopsis, description]:
Likewise.
(python-venusian)[synopsis]: Likewise.
* gnu/packages/python-xyz.scm (python-readlike, python-gssapi)
(python-flufl-i18n)[description]: Likewise.
(python-pox, python-watchdog, python-xattr)[synopsis, description]:
Likewise.
* gnu/packages/ruby.scm (ruby-sorcerer)[description]: Likewise.
* gnu/packages/rust-apps.scm (watchexec)[description]: Likewise.
* gnu/packages/rust.scm (mrustc)[synopsis]: Likewise.
* gnu/packages/shells.scm (s-shell)[description]: Likewise.
* gnu/packages/ssh.scm (sshpass)[description]: Likewise.
* gnu/packages/terminals.scm (beep)[description]: Likewise.
* gnu/packages/web.scm (perl-lwp-useragent-cached)[description]:
Likewise.
* gnu/packages/wv.scm (wv)[description]: Likewise.
|
2020-09-23 04:37:01 +02:00 |
|
Ricardo Wurmus
|
3159fcf145
|
gnu: r-wgcna: Move to (gnu packages bioconductor).
This is a follow-up to commit 6e0ab26f31.
* gnu/packages/cran.scm (r-wgcna): Move from here...
* gnu/packages/bioconductor.scm (r-wgcna): ...to here.
|
2020-09-14 21:40:15 +02:00 |
zimoun
|
3292f6eda0
|
gnu: r-fithic: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-fithic): Move from here...
* gnu/packages/bioconductor.scm (r-fithic): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2020-09-14 21:40:15 +02:00 |
|
zimoun
|
7df42d3774
|
gnu: r-hitc: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-hitc): Move from here...
* gnu/packages/bioconductor.scm (r-hitc): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2020-09-14 21:40:15 +02:00 |
|
zimoun
|
63b75c01c2
|
gnu: r-hdf5array: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-hdf5array): Move from here...
* gnu/packages/bioconductor.scm (r-hdf5array): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2020-09-14 21:40:10 +02:00 |
|
zimoun
|
c61268c1b7
|
gnu: r-rhdf5lib: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Move from here...
* gnu/packages/bioconductor.scm (r-rhdf5lib): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2020-09-14 21:39:33 +02:00 |
|
zimoun
|
8863c14cd8
|
gnu: r-beachmat: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-beachmat): Move from here...
* gnu/packages/bioconductor.scm (r-beachmat): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2020-09-14 21:39:30 +02:00 |
|
zimoun
|
916a3e59ab
|
gnu: r-singlecellexperiment: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Move from here...
* gnu/packages/bioconductor.scm (r-singlecellexperiment): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2020-09-14 21:39:27 +02:00 |
|
zimoun
|
6b1946b334
|
gnu: r-scater: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-scater): Move from here...
* gnu/packages/bioconductor.scm (r-scater): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2020-09-14 21:39:24 +02:00 |
|
zimoun
|
1193b77e60
|
gnu: r-scran: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-scran): Move from here...
* gnu/packages/bioconductor.scm (r-scran): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2020-09-14 21:39:22 +02:00 |
|
zimoun
|
8c7c6db408
|
gnu: r-delayedmatrixstats: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Move from here...
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2020-09-14 21:39:19 +02:00 |
|
zimoun
|
b3a998374c
|
gnu: r-rgraphviz: Move to (gnu packages bioconductor).
* gnu/packages/graph.scm (r-rgraphviz): Move from here...
* gnu/packages/bioconductor.scm (r-rgraphviz): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2020-09-14 21:39:16 +02:00 |
|
zimoun
|
6e0ab26f31
|
gnu: r-preprocesscore: Move to (gnu packages bioconductor).
* gnu/packages/statistics.scm (r-preprocesscore): Move from here...
* gnu/packages/bioconductor.scm (r-preprocesscore): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2020-09-14 21:39:12 +02:00 |
|
zimoun
|
f4d920b9f7
|
gnu: r-fourcseq: Move to (gnu packages bioconductor).
* gnu/packages/cran.scm (r-fourcseq): Move from here...
* gnu/packages/bioconductor.scm (r-fourcseq): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2020-09-14 21:39:00 +02:00 |
|
Ricardo Wurmus
|
e1ce10e385
|
gnu: r-activedriverwgs: Update to 1.1.0.
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.1.0.
[propagated-inputs]: Remove r-plyr.
[native-inputs]: Add r-knitr.
|
2020-09-14 19:07:44 +02:00 |
|
zimoun
|
b17ace24ca
|
gnu: r-codedepends: Comment why it is in bioconductor.scm.
* gnu/packages/bioconductor.scm (r-codedepends): Add comment.
|
2020-09-11 21:46:51 +02:00 |
Peter Lo
|
7e88ee9f02
|
gnu: Add r-fhtest.
* gnu/packages/bioconductor.scm (r-fhtest): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
|
2020-09-11 21:33:02 +02:00 |
|
Peter Lo
|
655c4bb25c
|
gnu: Add r-interval.
* gnu/packages/bioconductor.scm (r-interval): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2020-09-11 21:01:30 +02:00 |
|
Peter Lo
|
488001eb3f
|
gnu: Add r-icens.
* gnu/packages/bioconductor.scm (r-icens): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2020-09-11 19:13:58 +02:00 |
|
Ricardo Wurmus
|
40f378e18a
|
gnu: r-cicero: Update to 1.6.2.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.2.
|
2020-09-04 22:01:40 +02:00 |
|
Ricardo Wurmus
|
6bc6a71119
|
gnu: r-mixomics: Update to 6.12.2.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.12.2.
|
2020-09-04 22:01:40 +02:00 |
|
Ricardo Wurmus
|
60cc838403
|
gnu: r-atacseqqc: Update to 1.12.4.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.12.4.
|
2020-09-04 22:01:40 +02:00 |
|
Ricardo Wurmus
|
e1636671ec
|
gnu: r-gkmsvm: Update to 0.81.0.
* gnu/packages/bioconductor.scm (r-gkmsvm): Update to 0.81.0.
|
2020-09-04 22:01:40 +02:00 |
|
Ricardo Wurmus
|
0d2369be8b
|
gnu: r-chippeakanno: Update to 3.22.3.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.22.3.
|
2020-09-04 22:01:40 +02:00 |
|
Ricardo Wurmus
|
b828c3ea90
|
gnu: r-biocset: Update to 1.2.2.
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.2.2.
|
2020-08-20 21:25:33 +02:00 |
|
Ricardo Wurmus
|
a27a402eba
|
gnu: r-experimenthub: Update to 1.14.2.
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.14.2.
|
2020-08-20 21:25:33 +02:00 |
|
Ricardo Wurmus
|
1bdc770dc6
|
gnu: r-variancepartition: Update to 1.18.3.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.3.
|
2020-08-20 21:25:33 +02:00 |
|
Ricardo Wurmus
|
1bf630660b
|
gnu: r-rsubread: Update to 2.2.6.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.6.
|
2020-08-20 21:25:33 +02:00 |
|
Ricardo Wurmus
|
a20538ab7e
|
gnu: r-rbowtie: Update to 1.28.1.
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.28.1.
|
2020-08-20 21:25:33 +02:00 |
|
Ricardo Wurmus
|
4a504b80c2
|
gnu: r-biocfilecache: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.12.1.
|
2020-08-20 21:25:33 +02:00 |
|
Ricardo Wurmus
|
82cb9a99f8
|
gnu: r-rbowtie2: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.10.1.
|
2020-08-20 21:25:33 +02:00 |
|
Ricardo Wurmus
|
a8840a04d7
|
gnu: r-motifstack: Update to 1.32.1.
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.32.1.
|
2020-08-20 21:25:33 +02:00 |
|
Ricardo Wurmus
|
69f3b27822
|
gnu: r-clusterprofiler: Update to 3.16.1.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.16.1.
[propagated-inputs]: Add r-rlang.
|
2020-08-20 21:25:33 +02:00 |
|
Ricardo Wurmus
|
fc1c3c6f9f
|
gnu: r-gosemsim: Update to 2.14.1.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.14.1.
|
2020-08-20 21:25:33 +02:00 |
|
Ricardo Wurmus
|
0827e0be36
|
gnu: r-oligo: Update to 1.52.1.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.52.1.
|
2020-08-20 21:25:33 +02:00 |
|
Ricardo Wurmus
|
1c43c6fa6b
|
gnu: r-oligoclasses: Update to 1.50.4.
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.50.4.
|
2020-08-20 21:25:29 +02:00 |
|
Ricardo Wurmus
|
8fe3ef5d5a
|
gnu: r-abseqr: Add pandoc-citeproc.
* gnu/packages/bioconductor.scm (r-abseqr)[inputs]: Add pandoc-citeproc.
|
2020-08-16 15:57:26 +02:00 |
|
Ricardo Wurmus
|
6fa5e4aaae
|
gnu: r-abseqr: Use pandoc instead of ghc-pandoc.
* gnu/packages/bioconductor.scm (r-abseqr)[inputs]: Replace ghc-pandoc with
pandoc.
|
2020-08-16 15:57:26 +02:00 |
|
Ricardo Wurmus
|
0a41d9be2e
|
gnu: r-nmf: Update to 0.23.0.
* gnu/packages/bioconductor.scm (r-nmf): Update to 0.23.0.
[native-inputs]: Add r-knitr.
|
2020-08-12 13:57:10 +02:00 |