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Author SHA1 Message Date
Ricardo Wurmus 7fa2aacade
gnu: r-proj4: Update to 1.0-13. 
* gnu/packages/cran.scm (r-proj4): Update to 1.0-13.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus 4aeee4b57d
gnu: r-spatial: Update to 7.3-17. 
* gnu/packages/statistics.scm (r-spatial): Update to 7.3-17.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus 091bf43b7f
gnu: r-survival: Update to 3.5-7. 
* gnu/packages/statistics.scm (r-survival): Update to 3.5-7.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus 05044a5446
gnu: r-ggplot2: Update to 3.4.3. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.4.3.
 2023-08-28 14:22:43 +02:00
宋文武 4a49a89b09
gnu: intel-xed: Update to 2023.08.21. 
* gnu/packages/assembly.scm (intel-xed): Update to 2023.08.21.
[source]: Remove patches.
[native-inputs]: Remove tcsh.  Update mbuild to 2022.07.28.
* gnu/packages/patches/intel-xed-fix-nondeterminism.patch: Remove file
* gnu/local.mk (dist_patch_DATA): Remove it.
 2023-08-28 18:12:06 +08:00
宋文武 7533ed956c
gnu: anki: Fix preferences error. 
Fixes <https://issues.guix.gnu.org/65506>.

* gnu/packages/education.scm (anki)[source]: Add snippet.
 2023-08-28 18:07:17 +08:00
宋文武 23bcc85765
gnu: Add fonttosfnt. 
* gnu/packages/xorg.scm (fonttosfnt): New variable.
 2023-08-28 18:05:38 +08:00
宋文武 af1efa6f27
gnu: Add font-unscii. 
* gnu/packages/fonts.scm (font-unscii): New variable.
 2023-08-28 18:05:20 +08:00
宋文武 ceff14b7cd
gnu: Add gdb-multiarch. 
* gnu/packages/gdb.scm (gdb-multiarch): New variable.
 2023-08-28 18:01:07 +08:00
Navid Afkhami 058ce073da
gnu: Add r-ggstatsplot. 
* gnu/packages/cran.scm (r-ggstatsplot): New variable.
 2023-08-28 10:39:00 +02:00
Navid Afkhami ffa3355458
gnu: Add r-correlation. 
* gnu/packages/cran.scm (r-correlation): New variable.
 2023-08-28 10:39:00 +02:00
Navid Afkhami 47f69a881a
gnu: Add r-statsexpressions. 
* gnu/packages/cran.scm (r-statsexpressions): New variable.
 2023-08-28 10:38:07 +02:00
Navid Afkhami 9892efde37
gnu: Add r-wrs2. 
* gnu/packages/cran.scm (r-wrs2): New variable.
 2023-08-28 10:38:07 +02:00
Navid Afkhami 458832c16e
gnu: Add r-mc2d. 
* gnu/packages/cran.scm (r-mc2d): New variable.
 2023-08-28 10:38:07 +02:00
Ricardo Wurmus 3b92730212
gnu: r-oompadata: Update home page to HTTPS. 
* gnu/packages/cran.scm (r-oompadata)[home-page]: Use HTTPS.
 2023-08-28 10:29:43 +02:00
Navid Afkhami 32cdced051
gnu: Add r-oompabase. 
* gnu/packages/cran.scm (r-oompabase): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:29:26 +02:00
Navid Afkhami 48d90820e4
gnu: Add r-oompadata. 
* gnu/packages/cran.scm (r-oompadata): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:25:50 +02:00
Navid Afkhami cf941786ee
gnu: Add r-mousegastrulationdata. 
* gnu/packages/bioconductor.scm (r-mousegastrulationdata): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:19:53 +02:00
Navid Afkhami aa47077a8b
gnu: Add r-bumpymatrix. 
* gnu/packages/bioconductor.scm (r-bumpymatrix): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:17:27 +02:00
Navid Afkhami 0b0e050415
gnu: Add r-msigdb. 
* gnu/packages/bioconductor.scm (r-msigdb): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:06:37 +02:00
Navid Afkhami aaf261cc8c
gnu: Add r-earlywarnings. 
* gnu/packages/cran.scm (r-earlywarnings): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:01:17 +02:00
Navid Afkhami 432cf5b449
gnu: Add r-tgp. 
* gnu/packages/cran.scm (r-tgp): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 09:58:06 +02:00
Navid Afkhami 2dc030f38f
gnu: Add r-maptree. 
* gnu/packages/cran.scm (r-maptree): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 09:54:46 +02:00
Navid Afkhami dd14ee0676
gnu: Add python-scdamandtools. 
* gnu/packages/bioinformatics.scm (python-scdamandtools): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 09:50:08 +02:00
Leo Famulari 0aa74bebe3
gnu: linux-libre 6.1: Update to 6.1.47. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.47.
(linux-libre-6.1-pristine-source): Update hash.
 2023-07-23 22:26:00 -04:00
Leo Famulari 96d89018a0
gnu: linux-libre: Update to 6.4.12. 
* gnu/packages/linux.scm (linux-libre-6.4-version): Update to 6.4.12.
(linux-libre-6.4-pristine-source): Update hash.
 2023-07-23 22:26:00 -04:00
Tobias Geerinckx-Rice 5a2c3352d8
Revert "gnu: system: Add home-directory-permissions field to <user-account>." 
This reverts commit e9a5eebc78, which
as far as I can tell breaks system roll-backs thusly:

[...]
In gnu/build/accounts.scm:
   239:27  3 (_ #<<password-entry> name: "root" password: "x" uid: 0 gid: 0 real-name: "System >)
In unknown file:
           2 (string-join ("root" "x" "0" "0" "System administrator" "/root" #t) ":" #<undefined>)
In ice-9/boot-9.scm:
  1685:16  1 (raise-exception _ #:continuable? _)
  1685:16  0 (raise-exception _ #:continuable? _)

ice-9/boot-9.scm:1685:16: In procedure raise-exception:
In procedure string-append: Wrong type (expecting string): #t
 2023-08-20 02:00:00 +02:00
Greg Hogan 37cca1d87e
gnu: vbz-compression: Update to 1.0.3. 
* gnu/packages/bioinformatics.scm (vbz-compression): Update to 1.0.3.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:16:45 +01:00
Greg Hogan 1ae56be99e
gnu: spdlog: Fix tests. 
* gnu/packages/patches/spdlog-fix-tests.patch: New file.
* gnu/local.mk: Add it.
* gnu/packages/logging.scm (spdlog)[source]: Use patch.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:16:45 +01:00
Greg Hogan 68b3d71806
gnu: catch2: Update to 3.4.0. 
* gnu/packages/check.scm (catch2): Update to 3.4.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:16:44 +01:00
Cayetano Santos e7c7efc296
gnu: emacs-corfu-doc-terminal: Update to 0.9. 
* gnu/packages/emacs-xyz.scm (emacs-corfu-doc-terminal): Update to 0.9.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:11:30 +01:00
Cayetano Santos 35421248b1
gnu: emacs-gptel: Update to 0.4.0. 
* gnu/packages/emacs-xyz.scm (emacs-gptel): Update to 0.4.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:11:07 +01:00
Greg Hogan 6482f61a0c
gnu: python-graph-tool: Update to 2.57. 
* gnu/packages/graph.scm (python-graph-tool): Update to 2.57.
[propagated-inputs]: Add python-zstandard.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:10:23 +01:00
Andy Tai be2786144c
gnu: gemmlowp: Update to 0.1-1.08e4bb3. 
* gnu/packages/machine-learning.scm (gemmlowp): Update to 0.1-1.08e4bb3.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:05:57 +01:00
Andreas Enge 8b4a248fc4
Update tex team. 
* etc/teams.scm.in: Add gnu/packages/texlive.scm to the files and Andreas
Enge to the members of the tex team.
 2023-08-27 12:26:49 +02:00
Hilton Chain 5856e185a3
gnu: Add tree-sitter-cmake. 
* gnu/packages/tree-sitter.scm (tree-sitter-cmake): New variable.
 2023-08-27 12:11:04 +08:00
Hilton Chain 493e9c2f54
gnu: phantomsocks: Update to 0.0.0-20230811053544-53b995bdab83. 
* gnu/packages/networking.scm (phantomsocks): Update to
0.0.0-20230811053544-53b995bdab83.
[propagated-inputs]: Move go-github-com-google-gopacket and
go-github-com-macronut-go-tproxy to...
[inputs]: ...here.
 2023-08-27 12:08:00 +08:00
Hilton Chain 0ba7debb02
gnu: picard: Update to 2.9.1. 
* gnu/packages/music.scm (picard): Update to 2.9.1.
[uri]: Switch mirror.
[#:phases]: Add phase 'set-HOME.
Remove phase 'delete-failing-test.
 2023-08-27 12:05:16 +08:00
Piotr Kwiecinski e9bea73e2d
gnu: emacs-orderless: Update to 1.0. 
* gnu/packages/emacs-xyz.scm (emacs-orderless): Update to 1.0, previously used
commit was pointing to 0.8.

Signed-off-by: Hilton Chain <hako@ultrarare.space>
 2023-08-27 11:41:11 +08:00
Fabio Natali 262efbf9b1
gnu: emacs-hide-mode-line: Update to 1.0.3. 
* gnu/packages/emacs-xyz.scm (emacs-hide-mode-line): Update to 1.0.3.

Signed-off-by: Hilton Chain <hako@ultrarare.space>
 2023-08-27 11:39:53 +08:00
Cayetano Santos 5476f79e41
gnu: emacs-helpful: Update to 0.21. 
* gnu/packages/emacs-xyz.scm (emacs-helpful): Update to 0.21.

Signed-off-by: Hilton Chain <hako@ultrarare.space>
 2023-08-27 11:33:58 +08:00
Lu Hui 28fdf6cc16
gnu: libsigrokdecode: Update to 0.5.3-0.e6962b3, fix build. 
* gnu/packages/electronics.scm (libsigrokdecode): Update to 0.5.3-0.e6962b3.
[source]: Use git-fetch.  Remove patches.
[native-inputs]: Add libtool.
[arguments]<#:phases>: Remove bootstrap phase.
* gnu/packages/patches/libsigrokdecode-python3.9-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-08-27 10:19:34 +08:00
Maxim Cournoyer 1dce887776
gnu-maintenance: Consider Qt source tarballs as "release files". 
* guix/gnu-maintenance.scm (release-file?): Use positive logic in doc.
Add a special case for Qt source archives.
* tests/gnu-maintenance.scm ("release-file?"): Update test.
 2023-08-26 11:38:56 -04:00
Maxim Cournoyer bdaef69556
gnu-maintenance: Allow mirror URLs to fallback to the generic HTML updater. 
* guix/gnu-maintenance.scm (http-url?): Extract from html-updatable-package?,
modify to return the HTTP URL, and support the mirror:// scheme.
(%disallowed-hosting-sites): New variable, extracted from
html-updatable-package.
(html-updatable-package?): Rewrite a mirror:// URL to an HTTP or HTTPS one.
* guix/download.scm (%mirrors): Update comment.
 2023-08-26 11:38:56 -04:00
Maxim Cournoyer 6953fb9241
gnu-maintenance: Add support to rewrite version in URL path. 
Fixes <https://issues.guix.gnu.org/64015>.
Fixes <https://issues.guix.gnu.org/65304>.

Previously, the generic HTML updater would only look for the list of files
found at the parent of its current source URL, ignoring that the URL may embed
the version elsewhere in its path.  This could cause 'guix refresh' to report
no updates available, while in fact there were, such as for 'libuv'.

* guix/gnu-maintenance.scm (strip-trailing-slash): New procedure.
(%version-rx): New variable.
(rewrite-url): New procedure.
(import-html-release): New rewrite-url? argument.  When true, use the above
procedure.
(import-html-updatable-release): Call import-html-release with #:rewrite-url
set to #t.
* tests/gnu-maintenance.scm ("rewrite-url, to-version specified")
("rewrite-url, without to-version"): New tests.
 2023-08-26 11:38:56 -04:00
Maxim Cournoyer 6fb8cc312d
gnu-maintenance: Extract 'canonicalize-url' from 'import-html-release'. 
* guix/gnu-maintenance.scm
(canonicalize-url): New procedure, extracted from...
(import-html-release): ... here.  Use it.  Rename inner PACKAGE variable to
NAME, to explicit it is a string and not a package object.
 2023-08-26 11:38:56 -04:00
Maxim Cournoyer 2654232660
gnu-maintenance: Document nested procedures in 'import-html-release'. 
* guix/gnu-maintenance.scm (import-html-release): Add docstring to the
'file->signature/guess' and 'url->release' nested procedures.
 2023-08-26 11:38:56 -04:00
Maxim Cournoyer c6b5eeac92
gnu-maintenance: Accept package object in 'import-html-release' procedure. 
This is in preparation for a new URL rewriting feature, which will need to
have the current version information available.

* guix/gnu-maintenance.scm (import-html-release): Update doc.  Adjust default
value of the DIRECTORY argument.  Bind PACKAGE in lexical scope so that its
value there is unchanged.
(import-savannah-release, import-kernel.org-release)
(import-html-updatable-release): Adjust accordingly.
 2023-08-26 11:38:56 -04:00
Maxim Cournoyer a5e67dec2a
gnu-maintenance: Fix indentation. 
* guix/gnu-maintenance.scm: Re-indent file.
 2023-08-26 11:38:55 -04:00
Maxim Cournoyer f6cfc993ac
gnu-maintenance: Extract url->links procedure. 
* guix/gnu-maintenance.scm (url->links): New procedure.
(import-html-release): Use it.
 2023-08-26 11:38:55 -04:00