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59127 Commits (9380b0a0752d7b922a664e6d96899047cb2f2811)

Author SHA1 Message Date
Vinicius Monego 1f2076757a
gnu: Add blanket.
* gnu/packages/task-management.scm (blanket): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-22 10:57:08 +02:00
Michael Rohleder 69a5738796
gnu: mkvtoolnix: Update to 50.0.0.
* gnu/packages/video.scm (mkvtoolnix): Update to 50.0.0.
[inputs]: Add pcre2.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-22 10:57:08 +02:00
Michael Rohleder b655f34eb4
gnu: emacs-lice-el: Update to 0.2-2.482e58a.
[[PGP Signed Part:No public key for 7C7AFFBEFEF2CB25 created at 2020-09-17T19:44:34+0200 using RSA]]
Here is a rebased (to current master) patch.

> From bc2163d6da160b58591f77f352cf4ea8543454e2 Mon Sep 17 00:00:00 2001
From: Michael Rohleder <mike@rohleder.de>
Date: Sun, 6 Sep 2020 11:30:57 +0200
Subject: [PATCH] gnu: emacs-lice-el: Update to 0.2-2.482e58a.

* gnu/packages/emacs-xyz.scm (emacs-lice-el): Update to 0.2-2.482e58a.
[arguments]: Add phase 'patch-template-directory and 'install-templates.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-09-22 10:54:26 +02:00
Efraim Flashner 9ad3c86fe5
gnu: rust-owning-ref-0.4: Update to 0.4.1.
* gnu/packages/crates-io.scm (rust-owning-ref-0.4): Update to 0.4.1.
2020-09-22 11:35:21 +03:00
Efraim Flashner 1ee22f1053
gnu: Add rust-scopeguard-1.
* gnu/packages/crates-io.scm (rust-scopeguard-1): New variable.
(rust-scopeguard-1.0): Inherit from rust-scopeguard-1.
2020-09-22 11:32:13 +03:00
Efraim Flashner 50de4bfe20
gnu: Add rust-cloudabi-0.1.
* gnu/packages/crates-io.scm (rust-cloudabi-0.1): New variable.
(rust-cloudabi-0.0): Inherit from rust-cloudabi-0.1.
2020-09-22 11:30:15 +03:00
Efraim Flashner 6366e7cac5
gnu: Add rust-gettext-rs-0.5.
* gnu/packages/crates-io.scm (rust-gettext-rs-0.5): New variable.
(rust-gettext-rs-0.4): Inherit from rust-gettext-rs-0.5.
2020-09-22 11:13:14 +03:00
Konrad Hinsen d076ddc560
gnu: Add python-citeproc-py.
* gnu/packages/python-xyz.scm (python-citeproc-py): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-21 23:30:53 +02:00
Konrad Hinsen de8cc74749
gnu: Add python-rnc2rng.
* gnu/packages/python-xyz.scm (python-rnc2rng): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-21 23:30:43 +02:00
zimoun 74cb33c228
gnu: gdsl: Replace 'url-fetch' by 'git-fetch'.
Fixes <https://debbugs.gnu.org/25913>.

* gnu/packages/datastructures.scm (gdsl)[source]: Replace 'url-fetch' by
'git-fetch'.
[home-page]: Update.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2020-09-21 23:12:45 +02:00
Pierre Langlois a2b25890ee
gnu: samba: Update to 4.12.7 [security fixes].
Fixes CVE-2020-1472 with 4.12.7.
Fixes CVE-2020-10730, CVE-2020-10745, CVE-2020-10760 and CVE-2020-14303
with 4.12.4.

* gnu/packages/samba.org (samba): Update to 4.12.7.
2020-09-21 20:45:44 +01:00
Brendan Tildesley 1b8be80e5f
gnu: metapixel: Fix typo in description.
*  gnu/packages/image-processing.scm (metapixel)[description]: Fix typo.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-09-21 22:37:54 +03:00
Tobias Geerinckx-Rice 635bf73d2f
gnu: sudo: Update to 1.9.3.
* gnu/packages/admin.scm (sudo): Update to 1.9.3.
2020-09-21 20:35:49 +02:00
Boris A. Dekshteyn 17d30d1f6e
gnu: inkscape-1.0: Update to 1.0.1.
* gnu/packages/inkscape.scm (inkscape-1.0): Update to 1.0.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-09-21 19:39:25 +03:00
Tobias Geerinckx-Rice f23e439f9f
gnu: php: Disable unreliable test.
* gnu/packages/php.scm (php)[arguments]: Delete bug73837.phpt.
2020-09-21 15:24:07 +02:00
Efraim Flashner e04b90607a
services: Docker: Fix typo in configuration.
This is a follow-up to f0a09310e6.

* gnu/services/docker.scm (docker-shepherd-service): Properly reference
variables in service definition.
2020-09-21 15:04:14 +03:00
Paul Garlick 475e3768fc
gnu: Add texlive-caption.
* gnu/packages/tex.scm (texlive-caption): New variable.
2020-09-21 12:47:24 +01:00
Jesse Dowell 90492a9f13
gnu: docker: Compile with seccomp enabled.
* gnu/packages/docker.scm (docker)[arguments]: Adjust custom 'configure
phase to enable seccomp support.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-09-21 13:18:25 +03:00
Jesse Dowell f0a09310e6
services: docker: Fix enable-proxy? option.
The userland proxy option does not properly disable the userland proxy when
set to false. Docker defaults to enabling the userland proxy if the option is
unset on the command line.

* gnu/services/docker.scm (docker-shepherd-service): Properly handle the
'enable-proxy?' option.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-09-21 13:18:25 +03:00
Jesse Dowell 87a13a5e30
gnu: docker: Synchronize docker dependencies with the current version of docker.
* gnu/packages/docker.scm (docker-libnetwork): Update to 19.03-1.026aaba.
[source]: Follow URI redirection.
[arguments]: Adjust import-path accordingly.
[home-page]: Same.
* gnu/packages/networking.scm (go-sctp): Update to 0.0.0-2.6e2cb13.
[arguments]: Skip test suite.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-09-21 13:18:24 +03:00
Paul Garlick 921fad1a5a
gnu: texlive-microtype: Tweak description.
* gnu/packages/tex.scm (texlive-microtype)[description]: Fill paragraph
to standard width.
2020-09-21 11:14:51 +01:00
Mark H Weaver e6b6e83490
gnu: webkitgtk: Update to 2.30.0.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.30.0.
[arguments]: Add "-DUSE_SYSTEMD=OFF" to the configure flags.
2020-09-21 05:05:35 -04:00
Mark H Weaver 42a3db8cb7
gnu: Rename 'v' to 'vlang'.
* gnu/packages/vlang.scm (v, vlang): Rename 'v' to 'vlang',
keeping 'v' as a deprecated-package.
2020-09-21 05:05:19 -04:00
Mathieu Othacehe 1a0da8b4f3
services: base: Improve container related comments.
* gnu/services/base.scm (guix-shepherd-service): Clarify the usage of a
container for guix-daemon.
2020-09-21 10:48:16 +02:00
Mathieu Othacehe 6453915cf7
build: shepherd: Check for container support.
Fixes: <https://issues.guix.gnu.org/43533>.

* gnu/build/shepherd.scm (fork+exec-command/container): Check if containers
are supported before joining PID namespaces.
2020-09-21 10:22:12 +02:00
Efraim Flashner c515bbae0c
gnu: supertuxkart: Sort inputs alphabetically.
* gnu/packages/games.scm (supertuxkart)[inputs]: Sort alphabetically.
2020-09-21 10:01:02 +03:00
Raphaël Mélotte c1e73d074c
gnu: supertuxkart: Update to 1.2.
* gnu/packages/games.scm (supertuxkart): Update to 1.2.
[source]: Update snippet, some of the previously bundled libraries are
gone. Also update URL.
[arguments]: Remove unneeded configure flags.
[inputs]: Add sdl2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-09-21 09:59:32 +03:00
Tobias Geerinckx-Rice 0a38519694
gnu: eschalot: Cross-compile.
* gnu/packages/crypto.scm (eschalot)[arguments]: Use CC-FOR-TARGET.
2020-09-21 02:24:40 +02:00
Tobias Geerinckx-Rice 6b6dbff44e
gnu: eschalot: Fix build.
* gnu/packages/crypto.scm (eschalot)[inputs]: Use openssl-1.0.
2020-09-21 02:24:40 +02:00
Tobias Geerinckx-Rice b864ddb690
services: dicod: Reduce irony.
* gnu/services/dict.scm (dicod-service): Fix docstring typo.
2020-09-21 00:31:15 +02:00
Tobias Geerinckx-Rice 5e17ae7fbd
installer: Rename RUN-PARTIONING-PAGE.
* gnu/installer/newt/partition.scm (run-partioning-page): Rename to
run-partitioning-page.  Adjust all callers.
2020-09-21 00:31:15 +02:00
Tobias Geerinckx-Rice e1f3788944
installer: Fix docstring typoes.
* gnu/installer/connman.scm (connman-state, run-locale-page)
(start-swapping, stop-swapping, run-installer-steps): Fix typo in
docstring.
2020-09-21 00:31:15 +02:00
Efraim Flashner ae144ec797
gnu: oil: Don't hardcode gcc.
* gnu/packages/shells.scm (oil)[arguments]: In custom 'configure phase
use cc-for-target instead of hardcoding gcc.
2020-09-20 23:42:52 +03:00
Ryan Prior 02406d5c51
gnu: oil: Update to 0.8.0.
* gnu/packages/shells.scm (oil): Update to 0.8.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-09-20 23:42:52 +03:00
Nicolas Goaziou fd5cace4c9
gnu: emacs-beginend: Update to 2.2.0.
* gnu/packages/emacs-xyz.scm (emacs-beginend): Update to 2.2.0.
2020-09-20 22:38:32 +02:00
Nicolas Goaziou 822c19b920
gnu: emacs-bluetooth: Update to 0.2.
* gnu/packages/emacs-xyz.scm (emacs-bluetooth): Update to 0.2.
2020-09-20 22:36:15 +02:00
Efraim Flashner ff7bba573a
gnu: gnu-pw-mgr: Update to 2.7.
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 2.7.
[arguments]: Add new phase to work around /dev/tty not being available
in the build environment.
2020-09-20 22:34:53 +03:00
Kei Kebreau 5d351adaca
gnu: retux: Update to 1.4.1-1.
* gnu/packages/games.scm (retux): Add let binding and update to 1.4.1-1.
[version]: Update version string.
[source]: Update URL.
2020-09-20 13:32:41 -04:00
Tobias Geerinckx-Rice fb420edd20
gnu: knot-resolver: Update to 5.1.3.
* gnu/packages/dns.scm (knot-resolver): Update to 5.1.3.
[inputs]: Remove lua5.1-cqueues, lua5.1-filesystem, lua5.1-sec, and
lua5.1-socket.
2020-09-20 18:34:39 +02:00
Tobias Geerinckx-Rice 84e2853147
gnu: libbpf: Propagate pkg-config Requirements.
* gnu/packages/linux.scm (libbpf)[inputs]: Rename to, making libelf and
zlib, …
[propagated-inputs]: …this.
2020-09-20 18:34:39 +02:00
Julien Lepiller f9a6e3894b
gnu: Add antlr4.
* gnu/packages/java.scm (antlr4): New variable.
2020-09-20 13:57:09 +02:00
Julien Lepiller 5d115440c2
gnu: Add java-antlr4-runtime.
* gnu/packages/java.scm (java-antlr4-runtime): New variable.
* gnu/packages/patches/java-antlr4-Add-standalone-generator.patch: New
file.
* gnu/packages/patches/java-antlr4-fix-code-too-large.java: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
2020-09-20 13:56:44 +02:00
Julien Lepiller 1d630fe0f6
gnu: Add java-treelayout.
* gnu/packages/java.scm (java-treelayout): New variable.
2020-09-20 13:56:37 +02:00
Maxim Cournoyer 4d82e8e5c5
gnu: qemu: Move HTML documentation to the doc output.
* gnu/packages/virtualization.scm (qemu)[outputs]: Add "doc" output.
[phases]{create-samba-wrapper}: Correctly refer to the outputs keyword
argument.
{move-html-doc}: Add phase.
2020-09-19 23:22:46 -04:00
Maxim Cournoyer 38197bb509
gnu: qemu: Install the full documentation as an info manual.
* gnu/packages/patches/qemu-build-info-manual.patch: Add patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/virtualization.scm (qemu)[source]: Use it.
[phases]{install-info}: Remove phase.
{create-samba-wrapper}: Add after 'install.
2020-09-19 23:22:45 -04:00
Maxim Cournoyer 710fd17ad5
gnu: qemu: Enable parallel tests.
I've built QEMU 5.1.0 tens of times on a 24 logical core machines, and haven't
encountered a failure.  Tentatively re-enabling parallel tests.

* gnu/packages/virtualization.scm (qemu)[arguments]: Drop the
\#:parallel-tests? #f argument.
[phases]{configure}: Fix indentation.
2020-09-19 23:22:45 -04:00
Maxim Cournoyer 229091385a
gnu: qemu: Fix indentation.
* gnu/packages/virtualization.scm (qemu): Fix indentation.
2020-09-19 23:22:45 -04:00
Maxim Cournoyer afeed71ae4
gnu: qemu: Disable the bios-tables-test test.
This works around <https://issues.guix.info/43048>.

* gnu/packages/virtualization.scm (qemu)[phases]{disable-unusable-tests}: Move
after unpack.  Combine the existing substitute patterns on a single usage of
substitute*.  Disable the bios-tables-test test in
tests/qtest/Makefile.include.
2020-09-19 23:22:45 -04:00
Maxim Cournoyer d5d80a62b7
gnu: qemu: Update to 5.1.0.
* gnu/packages/virtualization.scm (qemu): Update to 5.1.0.
2020-09-19 23:22:45 -04:00
Danny Milosavljevic 6b1253718d
gnu: u-boot: Reomve sdl2 dependency on non-GUI builds.
* gnu/packages/bootloaders.scm (u-boot)[native-inputs]: Remove sdl2.
(u-boot-tools)[native-inputs]: Add sdl2.
2020-09-19 23:02:51 +02:00
Alexandros Theodotou 1bc5a77f0a
gnu: Add surge-synth.
* gnu/packages/music.scm (surge-synth): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2020-09-19 22:52:37 +02:00
Joseph LaFreniere cfcccc8a2a
gnu: Add emacs-standard-dirs.
* gnu/packages/emacs-xyz.scm (emacs-standard-dirs): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-19 22:52:37 +02:00
Mathieu Othacehe 0996fcc657
system: image: Rename ISO9660 files.
* gnu/system/image.scm (system-iso9660-image): Change the default file output
name to "image.iso".
2020-09-19 14:24:59 +02:00
Christopher Baines adcad54743
gnu: sqitch: Update to 1.1.0.
* gnu/packages/databases.scm (sqitch): Update to 1.1.0.
[native-inputs]: Add perl-test-mockobject.
2020-09-19 09:37:07 +01:00
Christopher Baines 6a1c3a908c
gnu: sqitch: Add more database drivers to inputs.
These are optional dependencies, but including them in the inputs and thus the
wrapped sqitch script makes using sqitch easier.

* gnu/packages/databases.scm (sqitch)[inputs]: Add perl-dbd-mysql and
perl-dbd-sqlite.
2020-09-19 09:37:07 +01:00
Guillaume Le Vaillant 70ef8b2455
gnu: electron-cash: Update to 4.1.1.
* gnu/packages/finance.scm (electron-cash): Update to 4.1.1.
2020-09-19 10:06:48 +02:00
Tobias Geerinckx-Rice 84da8f7fee
gnu: knot: Update to 3.0.0.
* gnu/packages/dns.scm (knot): Update to 3.0.0.
Order fields more conventionally.
[source]: Remove obsolete snippet.
2020-09-19 01:40:05 +02:00
Tobias Geerinckx-Rice dc5ccd2e4d
gnu: libmanette: Update to 0.2.5.
* gnu/packages/games.scm (libmanette): Update to 0.2.5.
2020-09-19 01:40:04 +02:00
Tobias Geerinckx-Rice 4c962fabe9
gnu: libfprint: Update to 1.90.3.
* gnu/packages/freedesktop.scm (libfprint): Update to 1.90.3.
2020-09-19 01:40:04 +02:00
Danny Milosavljevic e6ba735d68
gnu: Add svd2rust.
* gnu/packages/crates-io.scm (svd2rust): New variable.
2020-09-18 22:17:52 +02:00
Danny Milosavljevic efdd545fa7
gnu: Add rust-inflections@1.1.1.
* gnu/packages/crates-io.scm (rust-inflections-1.1): New variable.
2020-09-18 22:17:22 +02:00
Danny Milosavljevic 54f1f72c43
gnu: Add rust-svd-parser@0.9.0.
* gnu/packages/crates-io.scm (rust-svd-parser-0.9): New variable.
2020-09-18 22:15:48 +02:00
Danny Milosavljevic 2345c39e6c
gnu: Add rust-xmltree@0.8.0.
* gnu/packages/crates-io.scm (rust-xmltree-0.8): New variable.
2020-09-18 22:14:57 +02:00
Danny Milosavljevic 24bbc23741
gnu: Add rust-xml-rs@0.7.1.
* gnu/packages/crates-io.scm (rust-xml-rs-0.7): New variable.
2020-09-18 22:13:40 +02:00
Danny Milosavljevic 7e25147e15
gnu: Add rust-packed-struct.
* gnu/packages/crates-io.scm (rust-packed-struct): New variable.
2020-09-18 22:12:17 +02:00
Efraim Flashner 9ef590dc8a
gnu: xxd: Use cc-for-target.
* gnu/packages/vim.scm (xxd)[arguments]: Replace hard-coded gcc with
cc-for-target in make-flags.
2020-09-18 18:25:59 +03:00
Greg Hogan 469e6aaea0
gnu: Add cxxopts.
* gnu/packages/cpp.scm (cxxopts): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-18 16:43:17 +02:00
Paul Garlick 389b71aa0f
gnu: Add texlive-microtype.
* gnu/packages/tex.scm (texlive-microtype): New variable.
2020-09-18 15:10:13 +01:00
Leo Famulari 62f9921c83
gnu: linux-libre@4.4: Update to 4.4.236.
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.236.
(linux-libre-4.4-pristine-source): Update hash.
2020-09-18 09:38:39 -04:00
Leo Famulari 8b92de7ee6
gnu: linux-libre@4.9: Update to 4.9.236.
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.236.
(linux-libre-4.9-pristine-source): Update hash.
2020-09-18 09:38:39 -04:00
Leo Famulari 76ab528d01
gnu: linux-libre@4.14: Update to 4.14.198.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.198.
(linux-libre-4.14-pristine-source): Update hash.
2020-09-18 09:38:39 -04:00
Leo Famulari a91d5b6c05
gnu: linux-libre@4.19: Update to 4.19.146.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.146.
(linux-libre-4.19-pristine-source): Update hash.
2020-09-18 09:38:39 -04:00
Leo Famulari e2fad8d494
gnu: linux-libre@5.4: Update to 5.4.66.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.66.
(linux-libre-5.4-pristine-source): Update hash.
2020-09-18 09:38:39 -04:00
Leo Famulari 3b5b14d381
gnu: linux-libre: Update to 5.8.10.
* gnu/packages/linux.scm (linux-libre-5.8-version): Update to 5.8.10.
(linux-libre-5.8-pristine-source): Update hash.
2020-09-18 09:38:28 -04:00
Leo Prikler dac3fc0692
gnu: komikku: Update to 0.20.0.
* gnu/packages/gnome.scm (komikku): Update to 0.20.0.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-18 15:23:23 +02:00
Prafulla Giri d9dec1473d
gnu: calibre: Clean up 'wrap phase.
Based on the suggestion of the author, this commit cleans up the
changes introduced by fd3eac4dd7

For more information, see: https://issues.guix.gnu.org/43249

* gnu/packages/e-book.scm (calibre):
[arguments]: Remove the manual 'wrap phase replacement and add a
'wrap-program phase after standard 'wrap phase to make the runtime
dependency QtWebEngineProcess available to the binaries.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-18 15:21:19 +02:00
Jelle Licht 47640ca67d
gnu: emacs-helpful: Update to 0.17-1.be0e937f.
* gnu/packages/emacs-xyz.scm (emacs-helpful): Update to 0.17-1.b0e937f.
2020-09-18 15:12:11 +02:00
Mathieu Othacehe 66c83960a5
gnu: libsoundio: Fix indentation.
* gnu/packages/audio.scm (libsoundio): Fix indentation.
2020-09-18 15:00:19 +02:00
Alexandros Theodotou bea98f9a0b
gnu: Add libsoundio.
* gnu/packages/audio.scm (libsoundio): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-18 14:52:45 +02:00
Mathieu Othacehe ade7638d84
Revert "gnu: openblas: Update to 0.3.10."
This reverts commit c59e9f0a03 because it
triggers too many rebuilds.
2020-09-18 14:05:51 +02:00
Prafulla Giri cd6ec6706c
gnu: kdenlive: Simplify 'wrap-executable phase.
* gnu/packages/kde.scm (kdenlive)[arguments]: Use getenv to set the
values of QT_PLUGIN_PATH and QML2_IMPORT_PATH in the wrapper during
the 'wrap-executable phase.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-18 11:53:38 +02:00
Prafulla Giri 34b6dd36bb
gnu: kdenlive: Add missing dependencies.
This allows to browse the file-system using kdenlive's own file-chooser.

* gnu/packages/kde.scm (kdenlive)
[native-inputs]: Add pkg-config.
[inputs]: Add purpose and qtwebkit.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-18 11:53:05 +02:00
Prafulla Giri 18bf33a7c0
gnu: kdenlive: Update to 20.08.1.
* gnu/packages/kde.scm (kdenlive): Update to 20.08.1.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-18 11:52:41 +02:00
Vinicius Monego 7802875abc
gnu: Add python-beren.
* gnu/packages/python-web.scm (python-beren): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-18 11:47:01 +02:00
Vinicius Monego e1e577e088
gnu: Add python-apiron.
* gnu/packages/python-web.scm (python-apiron): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-18 11:47:00 +02:00
Michael Rohleder 6182897c98
gnu: plantuml: Update to 1.2020.16.
* gnu/packages/uml.scm (plantuml): Update to 1.2020.16.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-18 11:18:09 +02:00
Michael Rohleder a1f4c48721
gnu: emacs-vterm: Update to 0-3.14e4afd.
* gnu/packages/emacs-xyz.scm (emacs-vterm): Update to 0-3.14e4afd.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-18 11:18:09 +02:00
Morgan Smith de4705d92d
gnu: adms: Update to 2.3.7.
* gnu/packages/engineering.scm (adms): Update to 2.3.7.
[source]: Change the url to github and use the git-fetch method.
[native-inputs]: Add "autoconf", "automake", "libtool", "perl" and
"perl-xml-libxml".
[home-page]: Use the github page.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-18 09:48:45 +02:00
Greg Hogan ff128dc633
gnu: python-networkx: Update to 2.5.
* gnu/packages/python-xyz.scm (python-networkx): Update to 2.5.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-18 09:33:44 +02:00
Vinicius Monego 13ba3dc8a3
gnu: Add cozy.
* gnu/packages/ebook.scm (cozy): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-18 09:12:02 +02:00
Greg Hogan c59e9f0a03
gnu: openblas: Update to 0.3.10.
* gnu/packages/maths.scm (openblas): Update to 0.3.10.
[source]: Fetch from github.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-18 08:57:48 +02:00
Ludovic Courtès 98b89f4321
gnu: gnome-settings-daemon: Add "guix gc" to low disk space notification.
* gnu/packages/patches/gnome-settings-daemon-gc.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (gnome-settings-daemon)[source]: Use it.
2020-09-18 08:45:40 +02:00
Ludovic Courtès 5ce6c2d91d
gnu: gnome-settings-daemon: Record absolute file name of Baobab.
* gnu/packages/gnome.scm (gnome-settings-daemon)[arguments]: Add
'set-baobab-file-name' phase.
[inputs]: Add BAOBAB.
2020-09-18 08:44:48 +02:00
Ludovic Courtès 13a5d9f9e3
gnu: purple-mattermost: Update to 1.2-0.158ce20.
* gnu/packages/messaging.scm (purple-mattermost): Update to commit 158ce20.
2020-09-18 08:44:48 +02:00
Leo Famulari 679d5e6b3d
gnu: Properly credit Konrad Hinsen.
This is a followup to commit a96873565d.

* gnu/packages/python-web.scm: Update list of copyright holders.
2020-09-17 13:28:03 -04:00
Konrad Hinsen a96873565d
gnu: Add python-requests-ftp.
* gnu/packages/python-web.scm (python-requests-ftp): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-09-17 13:25:36 -04:00
Eric Bavier 34d150dcb2
gnu: hdf5: Update to 1.10.7.
Fixes CVE-2018-13870, CVE-2018-13869 and CVE-2018-17435.

* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.7.
2020-09-17 11:37:02 -05:00
Paul Garlick 94ca1e19b3
gnu: Add texlive-units.
* gnu/packages/tex.scm (texlive-units): New variable.
2020-09-17 16:21:28 +01:00
Vinicius Monego 9911dc10e2
gnu: python-libsass: Update to 0.20.1.
* gnu/packages/python-xyz.scm (python-libsass): Update to 0.20.1.
[arguments]: Enable test that failed in the previous version.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-17 16:18:00 +02:00
Greg Hogan b96f4f0995
gnu: openmpi: Update to 4.0.5.
* gnu/packages/mpi.scm (openmpi): Update to 4.0.5.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-17 16:18:00 +02:00
Jelle Licht 9e59ae320e
gnu: emacs-counsel-projectile: Update to 0.3.1.
* gnu/packages/emacs-xyz.scm (emacs-counsel-projectile): Update to 0.3.1.
2020-09-17 14:19:41 +02:00
Tobias Geerinckx-Rice 88c7175161
gnu: grammalecte: Update to 1.12.2.
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.12.2.
2020-09-17 14:10:43 +02:00
Tobias Geerinckx-Rice 1306283843
gnu: easyrpg-player: Update to 0.6.2.2.
* gnu/packages/easyrpg.scm (easyrpg-player): Update to 0.6.2.2.
2020-09-17 14:10:42 +02:00
Tobias Geerinckx-Rice dc2f0e703a
gnu: python-psycopg2: Update to 2.8.6.
* gnu/packages/databases.scm (python-psycopg2): Update to 2.8.6.
2020-09-17 14:10:42 +02:00
Arne Babenhauserheide 8b030edf02
gnu: guile-wisp: Update to 1.0.3
* gnu/packages/guile-xyz.scm (guile-wisp): Update to 1.0.3.
[source]: Access via hg and change from bitbucket to hg.sr.ht.
[arguments]: Replace 'bootstrap phase; remove Guile 3 patch
because Guile 3 is supported in 1.0.3.
[native-inputs]: Add autoconf and automake.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-17 13:45:43 +02:00
Konrad Hinsen 731354b8d7
gnu: Add python-pypandoc.
* gnu/packages/python-xyz.scm (python-pypandoc): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-17 11:41:47 +02:00
Mathieu Othacehe cc5f9348b8
gnu: cuirass: Update to 0.0.1-46.89f0dbc.
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-46.89f0dbc.
2020-09-17 10:45:38 +02:00
Efraim Flashner 6feb7a2107
gnu: vim-airline: Don't install tests.
* gnu/packages/vim.scm (vim-airline)[arguments]: Adjust install-plan to
not install tests.
2020-09-17 00:25:42 +03:00
Tobias Geerinckx-Rice a765b7b043
gnu: bind: Update to 9.16.7.
* gnu/packages/dns.scm (isc-bind): Update to 9.16.7.
2020-09-16 23:21:17 +02:00
Vinicius Monego 8d557d4167
gnu: Add emacs-sbt-mode.
* gnu/packages/emacs-xyz.scm (emacs-sbt-mode): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-09-16 22:26:28 +02:00
Vinicius Monego 98dc073afc
gnu: emacs-fountain-mode: Update to 3.3.0.
* gnu/packages/emacs-xyz.scm (emacs-fountain-mode): Update to 3.3.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-09-16 22:18:27 +02:00
Morgan Smith 67b1ca4283
gnu: Add emacs-eshell-syntax-highlighting.
* gnu/packages/emacs-xyz.scm (emacs-eshell-syntax-highlighting): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-09-16 22:06:06 +02:00
Pierre Langlois 891b045f38
gnu: mailutils: Fix unitialized variable in readmsg.
Fixes <https://bugs.gnu.org/43088>.

* gnu/packages/patches/mailutils-fix-uninitialized-variable.patch: New
file.
* gnu/packages/mail.scm (mailutils)[source]: Add patch.
* gnu/local.mk (dist_patch_DATA): Register patch.
2020-09-16 19:55:14 +01:00
Tobias Geerinckx-Rice 7194b63833
gnu: youtube-dl: Refer to ffmpeg.
Addresses <https://issues.guix.gnu.org/43418>.

* gnu/packages/video.scm (youtube-dl)[inputs]: Add ffmpeg.
[arguments]: Fall back to input ffmpeg instead of searching $PATH.
2020-09-16 13:50:21 +02:00
Paul Garlick 5674ea45a3
gnu: Add texlive-todonotes.
* gnu/packages/tex.scm (texlive-todonotes): New variable.
2020-09-16 12:22:59 +01:00
Jan (janneke) Nieuwenhuizen b85863f7ce
gnu: commencement: bash-mesboot0: Break store file-name in comment.
Fixes <https://bugs.gnu.org/43005>.
Reported by Vagrant Cascadian <vagrant@debian.org>.

* gnu/packages/commencement.scm (bash-mesboot0)[arguments]: Break store file
name in comment and add unquoted string-append to silence the
’assert-no-store-file-names’ check.  The store file name check is really meant
for code; this file name was unfortunately used is a comment.
2020-09-16 12:43:36 +02:00
Pierre Neidhardt 9e7b2658d9
gnu: sbcl-hu.dwim.common: Fix missing description.
* gnu/packages/lisp-xyz.scm (sbcl-hu.dwim.common)[description]: Repeat the
synopsis since there is nothing more to say about this library.
2020-09-16 09:54:53 +02:00
Gabriel Arazas feb657d244
gnu: Add rust-ansi-colours-1.
* gnu/packages/crates-io.scm (rust-ansi-colours-1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-09-16 09:46:48 +03:00
Gabriel Arazas c034fcd27f
gnu: Add rust-delta-e-0.2.
* gnu/packages/crates-io.scm (rust-delta-e-0.2): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-09-16 09:43:17 +03:00
Gabriel Arazas 833dfde76e
gnu: Add rust-lab-0.8, rust-lab-0.7, rust-lab-0.4.
* gnu/packages/crates-io.scm (rust-lab-0.8, rust-lab-0.7,
rust-lab-0.4): New variables.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-09-16 09:38:54 +03:00
Leo Famulari cca5720f41
gnu: Fix fetching the linux-libre deblobbing script.
This is a followup to commit 105a037090.

* gnu/packages/linux.scm (linux-libre-deblob-scripts): Truncate the version in
the file-name, not the source URI.
2020-09-15 23:21:57 -04:00
Tobias Geerinckx-Rice 3c9294c05f
gnu: gnome-bluetooth: Update to 3.34.1.
* gnu/packages/gnome.scm (gnome-bluetooth): Update to 3.34.1.
2020-09-16 00:29:40 +02:00
Tobias Geerinckx-Rice d6f1e81356
gnu: libimagequant: Update to 2.12.6.
* gnu/packages/image.scm (libimagequant): Update to 2.12.6.
2020-09-16 00:29:39 +02:00
Tobias Geerinckx-Rice 6a638349a0
gnu: tor: Update to 0.4.4.5.
* gnu/packages/tor.scm (tor): Update to 0.4.4.5.
2020-09-15 23:36:44 +02:00
Tobias Geerinckx-Rice 6564ffd7ad
gnu: surgescript: Update to 0.5.4.4.
* gnu/packages/game-development.scm (surgescript): Update to 0.5.4.4.
2020-09-15 23:36:43 +02:00
Tobias Geerinckx-Rice c4593535ea
gnu: waylandpp: Update to 0.2.8.
* gnu/packages/freedesktop.scm (waylandpp): Update to 0.2.8.
2020-09-15 23:36:43 +02:00
Tobias Geerinckx-Rice fac43c9259
gnu: homebank: Update to 5.4.3.
* gnu/packages/finance.scm (homebank): Update to 5.4.3.
2020-09-15 23:36:42 +02:00
Tobias Geerinckx-Rice afb3fed9c7
gnu: dico: Update to 2.10.
* gnu/packages/dico.scm (dico): Update to 2.10.
2020-09-15 23:36:42 +02:00
Tobias Geerinckx-Rice e4574a66fe
gnu: python-pbkdf2: Fix typo in description.
* gnu/packages/python-xyz.scm (python-pbkdf2)[description]: Fix typo.
2020-09-15 20:59:16 +02:00
Tobias Geerinckx-Rice 49478f9dbd
gnu: dump: Fix typo in description.
* gnu/packages/backup.scm (dump)[description]: Fix typo.
2020-09-15 20:59:15 +02:00
Tobias Geerinckx-Rice 04912d4f9f
gnu: cryptsetup: Update to 2.3.4.
* gnu/packages/cryptsetup.scm (cryptsetup): Update to 2.3.4.
2020-09-15 20:59:15 +02:00
Leo Prikler 757764b797
gnu: Add gtranslator.
* gnu/packages/gnome.scm (gtranslator): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-15 20:52:11 +02:00
Leo Prikler 9ede39d64f
gnu: Add libgda.
* gnu/packages/gnome.scm (libgda): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-15 20:52:11 +02:00
Mike Rosset 52139ce5b7
gnu: jack-2: Update to 1.9.14.
* gnu/packages/audio.scm (jack-2): Update to 1.9.14.
[arguments]: Add environment variable to phase 'set-linkflags.

Signed-off-by: Andreas Enge <andreas@enge.fr>
2020-09-15 20:07:52 +02:00
Ludovic Courtès f5163902d7
gnu: guix: Update to 1c21468.
* gnu/packages/package-management.scm (guix): Update to 1c21468.
2020-09-15 15:29:30 +02:00
Tobias Geerinckx-Rice e880e63740
gnu: fio: Update to 3.23.
* gnu/packages/benchmark.scm (fio): Update to 3.23.
2020-09-15 14:57:07 +02:00
Tobias Geerinckx-Rice 6493d0eec4
gnu: htop: Update to 3.0.2.
* gnu/packages/admin.scm (htop): Update to 3.0.2.
[native-inputs]: Remove python-wrapper.
2020-09-15 14:57:07 +02:00
Gabriel Arazas 1c21468c7a
gnu: Add goxel.
* gnu/packages/graphics.scm (goxel): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-15 14:40:20 +02:00
Ludovic Courtès 1b157bbef0
services: bitlbee: Support libpurple plugins.
* gnu/services/messaging.scm (bitlbee-shepherd-service): Pass
PURPLE_PLUGIN_PATH as #:environment-variables.
2020-09-15 14:40:20 +02:00
Pierre Neidhardt 6e05adbb8f
gnu: sbcl-trivial-clipboard: Update to 20200904.
* gnu/packages/lisp-xyz.scm (sbcl-trivial-clipboard): Update to 20200904.
2020-09-15 13:26:00 +02:00
Efraim Flashner a8360892d7
gnu: waybar: Fix build.
Reported by bdju.

* gnu/packages/pretty-print.scm (fmt-6): New variable.
* gnu/packages/wm.scm (waybar)[inputs]: Replace fmt with fmt-6.
2020-09-15 12:02:28 +03:00
Nicolas Goaziou b10edcb9d4
gnu: emacs-org: Update to 9.4.
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.4.
(emacs-org-contrib): Update to 20200914.
2020-09-15 09:21:15 +02:00
Efraim Flashner af4c633bbb
gnu: roffit: Adjust install phase.
* gnu/packages/groff.scm (roffit)[arguments]: Remove make-flags. Remove
custom 'pre-install phase. Replace 'install phase to also install
manpage.
2020-09-15 09:41:37 +03:00
Efraim Flashner 8aea855ac1
gnu: roffit: Wrap binary.
Fixes <https://debbugs.gnu.org/43306>.

* gnu/packages/groff.scm (roffit)[arguments]: Add 'wrap-binary phase to
help find perl libraries.
2020-09-15 09:37:18 +03:00
Ricardo Wurmus 818237d947
gnu: bsequencer: Update to 1.8.0.
* gnu/packages/music.scm (bsequencer): Update to 1.8.0.
2020-09-15 01:40:54 +02:00
Oleg Pykhalov f6dfe42129
services: docker: Fix service definition.
This commit follows a404716d41.

* gnu/services/docker.scm
(docker-configuration)[docker-cli]: New record field.
(docker-service-type): Use this.
* doc/guix.texi (Miscellaneous Services)[Docker Service]: Document this.
2020-09-15 01:10:55 +03:00
Prafulla Giri 8ba70a6ad3
gnu: kdenlive: Change source URL to follow permanent redirection.
* gnu/packages/kde.scm (kdenlive)[source]: Change url to follow
permanent redirection.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-14 23:04:11 +02:00
Prafulla Giri e33a1e546a
gnu: kde: kdenlive: Make breeze theme available at runtime.
* gnu/packages/kde.scm (kdenlive):
[inputs]: Add breeze.
[arguments]: In wrap-program phase, add XDG_DATA_DIRS to include
the 'share' sub-directory of the package breeze.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-14 23:04:11 +02:00
Sébastien Lerique 0d63abebd1
gnu: Add ripmime.
* gnu/packages/mail.scm (ripmime): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-14 23:04:10 +02:00
Ludovic Courtès 6cb573889b
gnu: guix: Update to 846403e.
* gnu/packages/package-management.scm (guix): Update to 846403e.
2020-09-14 23:04:10 +02:00
Efraim Flashner a404716d41
services: docker: Fix service definition.
This is a follow-up to 8422a67dc1.

* gnu/services/docker.scm (docker-service-type): Use a composed list for
packages in profile-service-type.
2020-09-14 23:22:34 +03:00
Efraim Flashner 276ab588a8
gnu: maven-compiler-plugin: Don't use unstable tarball.
* gnu/packages/maven.scm (maven-compiler-plugin)[source]: Download using
git-fetch.
2020-09-14 23:13:22 +03:00
Efraim Flashner 7cd50ad7fa
gnu: maven-resources-plugin: Don't use unstable tarball.
* gnu/packages/maven.scm (maven-resources-plugin)[source]: Download
using git-fetch.
2020-09-14 23:13:22 +03:00
Efraim Flashner 05cd8837eb
gnu: maven-jar-plugin: Don't use unstable tarball.
* gnu/packages/maven.scm (maven-jar-plugin)[source]: Download using
git-fetch.
2020-09-14 23:13:22 +03:00
Efraim Flashner 819ead3592
gnu: java-hdrhistogram: Don't use unstable tarball.
* gnu/packages/java.scm (java-hdrhistogram)[source]: Download using
git-fetch.
[arguments]: Add phase to make source writable.
2020-09-14 23:13:22 +03:00
Ricardo Wurmus 3159fcf145
gnu: r-wgcna: Move to (gnu packages bioconductor).
This is a follow-up to commit 6e0ab26f31.

* gnu/packages/cran.scm (r-wgcna): Move from here...
* gnu/packages/bioconductor.scm (r-wgcna): ...to here.
2020-09-14 21:40:15 +02:00
zimoun 3292f6eda0
gnu: r-fithic: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-fithic): Move from here...
* gnu/packages/bioconductor.scm (r-fithic): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14 21:40:15 +02:00
zimoun 7df42d3774
gnu: r-hitc: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-hitc): Move from here...
* gnu/packages/bioconductor.scm (r-hitc): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14 21:40:15 +02:00
zimoun 63b75c01c2
gnu: r-hdf5array: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-hdf5array): Move from here...
* gnu/packages/bioconductor.scm (r-hdf5array): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14 21:40:10 +02:00
zimoun c61268c1b7
gnu: r-rhdf5lib: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Move from here...
* gnu/packages/bioconductor.scm (r-rhdf5lib): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14 21:39:33 +02:00
zimoun 8863c14cd8
gnu: r-beachmat: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-beachmat): Move from here...
* gnu/packages/bioconductor.scm (r-beachmat): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14 21:39:30 +02:00
zimoun 916a3e59ab
gnu: r-singlecellexperiment: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Move from here...
* gnu/packages/bioconductor.scm (r-singlecellexperiment): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14 21:39:27 +02:00
zimoun 6b1946b334
gnu: r-scater: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-scater): Move from here...
* gnu/packages/bioconductor.scm (r-scater): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14 21:39:24 +02:00
zimoun 1193b77e60
gnu: r-scran: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-scran): Move from here...
* gnu/packages/bioconductor.scm (r-scran): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14 21:39:22 +02:00
zimoun 8c7c6db408
gnu: r-delayedmatrixstats: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Move from here...
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14 21:39:19 +02:00
zimoun b3a998374c
gnu: r-rgraphviz: Move to (gnu packages bioconductor).
* gnu/packages/graph.scm (r-rgraphviz): Move from here...
* gnu/packages/bioconductor.scm (r-rgraphviz): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14 21:39:16 +02:00
zimoun 6e0ab26f31
gnu: r-preprocesscore: Move to (gnu packages bioconductor).
* gnu/packages/statistics.scm (r-preprocesscore): Move from here...
* gnu/packages/bioconductor.scm (r-preprocesscore): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14 21:39:12 +02:00
zimoun f4d920b9f7
gnu: r-fourcseq: Move to (gnu packages bioconductor).
* gnu/packages/cran.scm (r-fourcseq): Move from here...
* gnu/packages/bioconductor.scm (r-fourcseq): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14 21:39:00 +02:00
Ricardo Wurmus 62881beb4d
gnu: r-rgraphviz: Build reproducibly.
Fixes <https://bugs.gnu.org/43398>.

* gnu/packages/graph.scm (r-rgraphviz)[arguments]: Add phase
"make-reproducible".
2020-09-14 21:25:17 +02:00
Ricardo Wurmus d60739dff2
gnu: r-quantreg: Update to 5.67.
* gnu/packages/statistics.scm (r-quantreg): Update to 5.67.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus 2feb943558
gnu: r-cowplot: Update to 1.1.0.
* gnu/packages/statistics.scm (r-cowplot): Update to 1.1.0.
[native-inputs]: Add r-knitr.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus 90ff99d9c5
gnu: r-rcpparmadillo: Update to 0.9.900.3.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.900.3.0.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus 995641369e
gnu: r-ggdendro: Update to 0.1.22.
* gnu/packages/statistics.scm (r-ggdendro): Update to 0.1.22.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus 7e2aa0efba
gnu: r-stringi: Update to 1.5.3.
* gnu/packages/statistics.scm (r-stringi): Update to 1.5.3.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus 98f76dbcfb
gnu: r-mass: Update to 7.3-53.
* gnu/packages/statistics.scm (r-mass): Update to 7.3-53.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus 1c1b941902
gnu: r-diversitree: Update to 0.9-14.
* gnu/packages/cran.scm (r-diversitree): Update to 0.9-14.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus 8731d274ae
gnu: r-seurat: Update to 3.2.1.
* gnu/packages/cran.scm (r-seurat): Update to 3.2.1.
[propagated-inputs]: Remove r-ape; add r-matrixstats.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus e6711231ed
gnu: r-rfast: Update to 2.0.1.
* gnu/packages/cran.scm (r-rfast): Update to 2.0.1.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus 0982ffa898
gnu: r-scatterpie: Update to 0.1.5.
* gnu/packages/cran.scm (r-scatterpie): Update to 0.1.5.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus df2210be8b
gnu: r-forecast: Update to 8.13.
* gnu/packages/cran.scm (r-forecast): Update to 8.13.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus ad10a45225
gnu: r-gamlss: Update to 5.2-0.
* gnu/packages/cran.scm (r-gamlss): Update to 5.2-0.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus bf37420fe7
gnu: r-parameters: Update to 0.8.5.
* gnu/packages/cran.scm (r-parameters): Update to 0.8.5.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus 515b746945
gnu: r-systemfonts: Update to 0.3.1.
* gnu/packages/cran.scm (r-systemfonts): Update to 0.3.1.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus 3f67fb11cf
gnu: r-dalex: Update to 2.0.
* gnu/packages/cran.scm (r-dalex): Update to 2.0.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus ef59d57841
gnu: r-sf: Update to 0.9-6.
* gnu/packages/cran.scm (r-sf): Update to 0.9-6.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus b426f79602
gnu: r-deldir: Update to 0.1-29.
* gnu/packages/cran.scm (r-deldir): Update to 0.1-29.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus 0435f7eec1
gnu: r-shinyjs: Update to 2.0.0.
* gnu/packages/cran.scm (r-shinyjs): Update to 2.0.0.
[native-inputs]: Add r-knitr.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus 11f448ba74
gnu: r-etm: Update to 1.1.1.
* gnu/packages/cran.scm (r-etm): Update to 1.1.1.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus ffe714b5f4
gnu: r-fields: Update to 11.4.
* gnu/packages/cran.scm (r-fields): Update to 11.4.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus 0f93324a83
gnu: r-rnifti: Update to 1.2.2.
* gnu/packages/cran.scm (r-rnifti): Update to 1.2.2.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus 0b73771ad9
gnu: r-misc3d: Update to 0.9-0.
* gnu/packages/cran.scm (r-misc3d): Update to 0.9-0.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus 015e15c836
gnu: r-rcpphnsw: Update to 0.3.0.
* gnu/packages/cran.scm (r-rcpphnsw): Update to 0.3.0.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus a1e92714ce
gnu: r-ggeffects: Update to 0.16.0.
* gnu/packages/cran.scm (r-ggeffects): Update to 0.16.0.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus 7975d2c3b8
gnu: r-performance: Update to 0.5.0.
* gnu/packages/cran.scm (r-performance): Update to 0.5.0.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus 5efeef3f01
gnu: r-mosaicdata: Update to 0.20.1.
* gnu/packages/cran.scm (r-mosaicdata): Update to 0.20.1.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus 9e3712958f
gnu: r-mosaiccore: Update to 0.8.0.
* gnu/packages/cran.scm (r-mosaiccore): Update to 0.8.0.
[propagated-inputs]: Remove r-lazyeval.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus 6880269b94
gnu: r-flextable: Update to 0.5.11.
* gnu/packages/cran.scm (r-flextable): Update to 0.5.11.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus 07c1620f81
gnu: r-insight: Update to 0.9.5.
* gnu/packages/cran.scm (r-insight): Update to 0.9.5.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus 9a22da3790
gnu: r-officer: Update to 0.3.14.
* gnu/packages/cran.scm (r-officer): Update to 0.3.14.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus 16cc10eafb
gnu: r-extradistr: Update to 1.9.1.
* gnu/packages/cran.scm (r-extradistr): Update to 1.9.1.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus 8d8db33f71
gnu: r-tsa: Update to 1.3.
* gnu/packages/cran.scm (r-tsa): Update to 1.3.
[propagated-inputs]: Add r-tseries.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus 60e4d97295
gnu: r-xfun: Update to 0.17.
* gnu/packages/cran.scm (r-xfun): Update to 0.17.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus cb4243eaba
gnu: r-processx: Update to 3.4.4.
* gnu/packages/cran.scm (r-processx): Update to 3.4.4.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus 302dacec7e
gnu: r-xts: Update to 0.12.1.
* gnu/packages/cran.scm (r-xts): Update to 0.12.1.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus dee6078a86
gnu: r-psych: Update to 2.0.8.
* gnu/packages/cran.scm (r-psych): Update to 2.0.8.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus c5199f2918
gnu: r-inline: Update to 0.3.16.
* gnu/packages/cran.scm (r-inline): Update to 0.3.16.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus 5473d23f59
gnu: r-lmtest: Update to 0.9-38.
* gnu/packages/cran.scm (r-lmtest): Update to 0.9-38.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus 54c91e4a66
gnu: r-shape: Update to 1.4.5.
* gnu/packages/cran.scm (r-shape): Update to 1.4.5.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus 8c7a185779
gnu: r-jsonlite: Update to 1.7.1.
* gnu/packages/cran.scm (r-jsonlite): Update to 1.7.1.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus adde909369
gnu: r-callr: Update to 3.4.4.
* gnu/packages/cran.scm (r-callr): Update to 3.4.4.
2020-09-14 19:07:44 +02:00
Ricardo Wurmus c629dce1df
gnu: r-ggpmisc: Update to 0.3.6.
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.3.6.
[propagated-inputs]: Add r-glue.
2020-09-14 19:07:44 +02:00
Ricardo Wurmus e1ce10e385
gnu: r-activedriverwgs: Update to 1.1.0.
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.1.0.
[propagated-inputs]: Remove r-plyr.
[native-inputs]: Add r-knitr.
2020-09-14 19:07:44 +02:00
Mathieu Othacehe 327f6aec55
gnu: emacs-esup: Fix build.
* gnu/packages/emacs-xyz.scm (emacs-esup): Update to 0.7.1-1.0de8af8.
[native-inputs]: Add "emacs-buttercup" and "emacs-undercover", remove
"emacs-el-mock".
[propagated-inputs]: Add "emacs-dash".
[arguments]: Fix testing.
2020-09-14 18:12:41 +02:00
Alexandros Theodotou 913faed8ba
gnu: Add lsp-dsp-lib.
* gnu/packages/audio.scm (lsp-dsp-lib): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-09-14 17:23:32 +03:00
Efraim Flashner 8422a67dc1
services: docker: Make docker command available.
* gnu/services/docker.scm (docker-service-type): Extend the
profile-service-type and add the docker-cli package.
2020-09-14 17:21:16 +03:00
Ryan Prior 4a2cb3fa0e
gnu: Add quickjs.
* gnu/packages/javascript.scm (quickjs): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-14 16:12:36 +02:00
Mathieu Othacehe bc5dcd9ef5
gnu: cuirass: Update to 0.0.1-45.cf11b73.
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-45.cf11b73.
2020-09-14 14:43:33 +02:00
Stefan 8c4f1aa85f
gnu: grub: Support loading files from TFTP if the root filesystem is NFS.
* gnu/bootloader/grub.scm (grub-root-search): Set the root to "(tftp)" if
the searched-for file is stored on NFS.
2020-09-14 14:25:04 +02:00
Ricardo Wurmus f6807498be
gnu: Add altermime.
* gnu/packages/mail.scm (altermime): New variable.
2020-09-14 13:17:46 +02:00
zimoun c22c6de453
gnu: rapicorn: Use pandoc instead of ghc-pandoc.
* gnu/packages/graphics.scm (rapicorn)[native-inputs]: Replace ghc-pandoc with
pandoc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-14 10:51:27 +02:00
zimoun 885332832c
gnu: ganeti: Use pandoc instead of ghc-pandoc.
* gnu/packages/text-editors.scm (ganeti)[native-inputs]: Replace ghc-pandoc
with pandoc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-14 10:51:27 +02:00
zimoun 5dc5a3116b
gnu: manuskript: Use pandoc instead of ghc-pandoc.
* gnu/packages/text-editors.scm (manuskript)[inputs]: Replace ghc-pandoc with
pandoc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-14 10:51:26 +02:00
zimoun 991c61678b
gnu: emacs-org-web-tools: Use pandoc instead of ghc-pandoc.
* gnu/packages/emacs-xyz.scm (emacs-org-webtools)[inputs]: Replace ghc-pandoc
with pandoc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-14 10:51:26 +02:00
zimoun d37279ee1e
gnu: emacs-ox-pandoc: Use pandoc instead of ghc-pandoc.
* gnu/packages/emacs-xyz.scm (emacs-ox-pandoc)[inputs]: Replace ghc-pandoc
with pandoc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-14 10:51:26 +02:00
zimoun 8cc8e584ab
gnu: ruby-pandoc-ruby: Use pandoc instead of ghc-pandoc.
* gnu/packages/ruby.scm (ruby-pandoc-ruby)[native-inputs]: Replace ghc-pandoc
with pandoc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-14 10:51:26 +02:00
Pierre Neidhardt 24244f3fbf
gnu: python-wrapper: Mention pip in description.
* gnu/packages/python.scm (python-wrapper)[description]: Mention that `pip'
won't work properly if both python and python-wrapper are installed.
2020-09-14 10:35:05 +02:00
Efraim Flashner f165f7c9cb
gnu: sxiv: Use 'cc-for-target'.
* gnu/packages/image-viewers.scm (sxiv)[arguments]: Replace hard-coded
gcc substitution with cc-for-target in make-flags.
2020-09-14 10:30:42 +03:00
Efraim Flashner 858bb37a1d
gnu: sxiv: Install icons.
* gnu/packages/image-viewers.scm (sxiv)[arguments]: Add custom phase to
install icons.
2020-09-14 10:27:46 +03:00
Efraim Flashner d67a3beb52
gnu: sxiv: Install desktop file.
* gnu/packages/image-viewers.scm (sxiv)[arguments]: Add custom
'install-desktop-file phase to install desktop file.
2020-09-14 10:25:34 +03:00
Gabriel Arazas e641a95694
gnu: rofi: Update to 1.6.0.
* gnu/packages/xdisorg.scm (rofi): Update to 1.6.0.
[inputs]: Add libjpeg-turbo.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-09-14 10:08:24 +03:00
Robin Green 1042d269a7
gnu: Update coq and its dependents
* gnu/packages/coq.scm (coq): Update to 8.11.2
(coq-flocq): Update to 3.3.1
(coq-gappa): Update to 1.4.4
(coq-mathcomp): Update to 1.11.0
(coq-coquelicot): Update to 3.1.0
(coq-bignums): Update to 8.11.0
(coq-interval): Update to 4.0.0
(coq-equations): Update to 1.2.3

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2020-09-14 01:55:52 +02:00
Tobias Geerinckx-Rice 2cae49f9c9
gnu: youtube-dl: Update to 2020.09.14.
* gnu/packages/video.scm (youtube-dl): Update to 2020.09.14.
2020-09-14 00:55:34 +02:00
Tobias Geerinckx-Rice d392226f4a
gnu: python-ansi2html: Fix typo in description.
* gnu/packages/python-xyz.scm (python-ansi2html)[description]: Fix typo.
2020-09-14 00:23:01 +02:00
Tobias Geerinckx-Rice 61d02cecd9
gnu: wesnoth: Update to 1.14.14.
* gnu/packages/games.scm (wesnoth): Update to 1.14.14.
2020-09-14 00:23:01 +02:00
Tobias Geerinckx-Rice 1e58798bc4
gnu: jasper: Update to 2.0.20 [fixes CVE-2016-9398's revenge].
* gnu/packages/image.scm (jasper): Update to 2.0.20.
[arguments]: Skip tests of the now-disabled MIF image format.
2020-09-14 00:23:00 +02:00
Tobias Geerinckx-Rice ce4a497b13
gnu: shellcheck: Update to 0.7.1.
* gnu/packages/haskell-apps.scm (shellcheck): Update to 0.7.1.
2020-09-14 00:23:00 +02:00
Tobias Geerinckx-Rice 33061f7bf1
gnu: bear: Update to 2.4.4.
* gnu/packages/build-tools.scm (bear): Update to 2.4.4.
2020-09-14 00:23:00 +02:00
Leo Prikler 43514b82e4
gnu: libhandy: Enable glade_catalog.
* gnu/packages/gnome.scm (libhandy)[configure-flags]: Add glade_catalog.
[inputs]: Add glade and libxml2.
(libhandy-0.0)[configure-flags]: Keep glade_catalog disabled.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-13 23:34:23 +02:00
Leo Prikler 88915958c0
gnu: glade: Add catalog and module search paths.
* gnu/packages/gnome.scm (glade3)[native-search-paths]: Add
GLADE_CATALOG_SEARCH_PATH and GLADE_MODULE_SEARCH_PATH.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-13 23:34:23 +02:00
Morgan Smith 227932991f
gnu: emacs-djvu: Add needed inputs
* gnu/packages/emacs-xyz.scm (emacs-djvu)[inputs, arguments]: New fields.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-13 23:34:23 +02:00
Timotej Lazar 11a962e653
services: certbot: Support registration without email.
* gnu/services/certbot.scm (certbot-configuration): Add default for the
email option.
(certbot-command): Pass email for registration only when specified.
* doc/guix.texi (Certificate Services): "mandatory"→"optional" email.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-13 23:34:23 +02:00
Greg Hogan 0f918908eb
gnu: fmt: Update to 7.0.3.
From 820d39a55a5673fffac70c919b8cc3b28d94f6e7 Mon Sep 17 00:00:00 2001
From: Greg Hogan <code@greghogan.com>
Date: Fri, 11 Sep 2020 10:53:20 +0000
Subject: [PATCH] gnu: fmt: Update to 7.0.3.

* gnu/packages/pretty-print.scm (fmt): Update to 7.0.3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-13 23:34:23 +02:00
zimoun 0214d5dd84
gnu: gcc-toolchain: Reword description.
* gnu/packages/commencement.scm (make-gcc-toolchain)[description]: Reword.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-13 23:34:22 +02:00
zimoun 542c4707de
gnu: gccgo: Reword synopsis and description.
Fixes <https://bugs.gnu.org/43303>.
Reported by Jeffrey Walton <noloader@gmail.com>.

* gnu/packages/gcc.scm: (gccgo-4.9): Add synopsis and description

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-13 23:34:22 +02:00
zimoun a4fe16ee41
gnu: libgccjit: Reword synopsis and description.
Fixes <https://bugs.gnu.org/43303>.
Reported by Jeffrey Walton <noloader@gmail.com>.

* gnu/packages/gcc.scm: (libgccjit)[synopsis,description]: Reword.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-13 23:34:22 +02:00
Alexandros Theodotou 66ce92ffe4
gnu: zrythm: Update to 0.8.911.
* gnu/packages/music.scm (zrythm): Update to 0.8.911.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-13 23:34:22 +02:00
Alexandros Theodotou ae286b58c8
gnu: Add meson 0.55.1.
* gnu/packages/build-tools.scm (meson-0.55): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2020-09-13 23:34:22 +02:00
Alexandros Theodotou fce852c458
gnu: libaudec: Update to 0.2.3.
* gnu/packages/audio.scm (libaudec): Update to 0.2.3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-13 23:34:22 +02:00
Ludovic Courtès 978c9bc50d
gnu: libcyaml: Update to 1.1.0.
* gnu/packages/web.scm (libcyaml): Update to 1.1.0.
2020-09-13 23:34:22 +02:00
Tobias Geerinckx-Rice 71992a532d
services: Fix zram-device-service.
* gnu/services/linux.scm (<zram-device-configuration>): Fix typo.
2020-09-13 23:07:36 +02:00