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1217 Commits (9534e7b7061f672d4b8a0d4cafd3b1be7908a613)

Author SHA1 Message Date
Ricardo Wurmus 0b8c7e4bb5
gnu: Add r-m3c. 
* gnu/packages/bioconductor.scm (r-m3c): New variable.
 2020-08-11 11:27:06 +02:00
Tobias Geerinckx-Rice 702a101257
gnu: Use HTTPS for github.com (and subdomains) home pages. 
* gnu/packages/bioconductor.scm (r-qvalue)[home-page]: Use HTTPS and
follow permanent redirection.
* gnu/packages/check.scm (python-codecov, python-nosexcover)
[home-page]: Likewise.
* gnu/packages/cran.scm (r-ffbase, r-ggrepel, r-valr)
[home-page]: Likewise.
* gnu/packages/crates-io.scm (rust-block-0.1, rust-dispatch-0.1)
(rust-objc-0.2, rust-objc-exception-0.1)
(rust-objc-foundation-0.1, rust-objc-id-0.1, rust-objc-test-utils-0.0)
(rust-onig-5.0, rust-onig-sys-69.2, rust-vergen-3.1)
[home-page]: Likewise.
* gnu/packages/finance.scm (ledger-agent, keepkey-agent)
[home-page]: Likewise.
* gnu/packages/haskell-check.scm (ghc-tasty-expected-failure)
[home-page]: Likewise.
* gnu/packages/haskell-web.scm (ghc-bsb-http-chunked, ghc-warp)
(ghc-warp-tls)[home-page]: Likewise.
* gnu/packages/haskell-xyz.scm (ghc-configurator, ghc-hasktags)
(ghc-linear, ghc-newtype-generics, ghc-retry, ghc-xdg-basedir)
(ghc-pretty-show)[home-page]: Likewise.
* gnu/packages/java.scm (java-javax-inject)[home-page]: Likewise.
* gnu/packages/libffi.scm (ruby-ffi)[home-page]: Likewise.
* gnu/packages/linux.scm (procenv)[home-page]: Likewise.
* gnu/packages/python-web.scm (python-aiodns, python-flask-htpasswd)
(python-pycares)[home-page]: Likewise.
* gnu/packages/python-xyz.scm (python-progressbar33, python-whatever)
(python-funcy)[home-page]: Likewise.
* gnu/packages/ruby.scm (ruby-rubyzip, ruby-spinach, ruby-gherkin-ruby)
(ruby-code-statistics, ruby-colorize, ruby-wwtd)[home-page]: Likewise.
 2020-07-16 20:12:06 +02:00
Ricardo Wurmus a9a912805a
gnu: r-activepathways: Update to 1.0.2. 
* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.0.2.
[propagated-inputs]: Remove r-metap.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus 1a7d1c54d4
gnu: r-rsubread: Update to 2.2.4. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.4.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus 2d9c897dd0
gnu: r-variancepartition: Update to 1.18.2. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.2.
 2020-07-16 10:08:03 +02:00
Ludovic Courtès b0e7b6992f
gnu: Remove ".git" from "https://github/…/….git". 
Until now, 'lookup-origin' and thus 'lookup-origin-revision' in (guix
swh) would sometimes return #f for these because the ".git" URLs are
redirects to the non-".git" URLs.  Consequently, 'guix lint -c archival'
would keep saying "scheduled Software Heritage archival"; likewise, the
fallback download code would fail.

* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/aidc.scm,
gnu/packages/algebra.scm,
gnu/packages/android.scm,
gnu/packages/animation.scm,
gnu/packages/arcan.scm,
gnu/packages/assembly.scm,
gnu/packages/audio.scm,
gnu/packages/authentication.scm,
gnu/packages/avr.scm,
gnu/packages/axoloti.scm,
gnu/packages/backup.scm,
gnu/packages/bash.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioconductor.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/boost.scm,
gnu/packages/build-tools.scm,
gnu/packages/c.scm,
gnu/packages/calendar.scm,
gnu/packages/cdrom.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/chez.scm,
gnu/packages/clojure.scm,
gnu/packages/code.scm,
gnu/packages/compression.scm,
gnu/packages/compton.scm,
gnu/packages/coq.scm,
gnu/packages/cpp.scm,
gnu/packages/cran.scm,
gnu/packages/crypto.scm,
gnu/packages/curl.scm,
gnu/packages/databases.scm,
gnu/packages/datastructures.scm,
gnu/packages/debug.scm,
gnu/packages/disk.scm,
gnu/packages/distributed.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/dns.scm,
gnu/packages/docker.scm,
gnu/packages/education.scm,
gnu/packages/efi.scm,
gnu/packages/elixir.scm,
gnu/packages/emacs-xyz.scm,
gnu/packages/embedded.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/erlang.scm,
gnu/packages/fabric-management.scm,
gnu/packages/file-systems.scm,
gnu/packages/finance.scm,
gnu/packages/firmware.scm,
gnu/packages/flashing-tools.scm,
gnu/packages/fonts.scm,
gnu/packages/fontutils.scm,
gnu/packages/fpga.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/genealogy.scm,
gnu/packages/genimage.scm,
gnu/packages/geo.scm,
gnu/packages/gimp.scm,
gnu/packages/gl.scm,
gnu/packages/gnome-xyz.scm,
gnu/packages/gnome.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/golang.scm,
gnu/packages/gpodder.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/groff.scm,
gnu/packages/groovy.scm,
gnu/packages/gtk.scm,
gnu/packages/guile-xyz.scm,
gnu/packages/guile.scm,
gnu/packages/hardware.scm,
gnu/packages/haskell-apps.scm,
gnu/packages/haskell-xyz.scm,
gnu/packages/hexedit.scm,
gnu/packages/i2p.scm,
gnu/packages/ibus.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/ipfs.scm,
gnu/packages/java-graphics.scm,
gnu/packages/java-maths.scm,
gnu/packages/java.scm,
gnu/packages/javascript.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/jupyter.scm,
gnu/packages/kodi.scm,
gnu/packages/language.scm,
gnu/packages/lego.scm,
gnu/packages/less.scm,
gnu/packages/libusb.scm,
gnu/packages/linux.scm,
gnu/packages/lirc.scm,
gnu/packages/lisp-xyz.scm,
gnu/packages/llvm.scm,
gnu/packages/logging.scm,
gnu/packages/lolcode.scm,
gnu/packages/lua.scm,
gnu/packages/lxde.scm,
gnu/packages/lxqt.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/markup.scm,
gnu/packages/maths.scm,
gnu/packages/maven.scm,
gnu/packages/mes.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/node-xyz.scm,
gnu/packages/ocaml.scm,
gnu/packages/ocr.scm,
gnu/packages/onc-rpc.scm,
gnu/packages/opencl.scm,
gnu/packages/opencog.scm,
gnu/packages/pantheon.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/perl6.scm,
gnu/packages/phabricator.scm,
gnu/packages/popt.scm,
gnu/packages/printers.scm,
gnu/packages/prolog.scm,
gnu/packages/protobuf.scm,
gnu/packages/pulseaudio.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/python-xyz.scm,
gnu/packages/qt.scm,
gnu/packages/radio.scm,
gnu/packages/rails.scm,
gnu/packages/rdf.scm,
gnu/packages/rednotebook.scm,
gnu/packages/rpc.scm,
gnu/packages/rsync.scm,
gnu/packages/ruby.scm,
gnu/packages/rust.scm,
gnu/packages/scheme.scm,
gnu/packages/screen.scm,
gnu/packages/security-token.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/shellutils.scm,
gnu/packages/simh.scm,
gnu/packages/sml.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/stenography.scm,
gnu/packages/sync.scm,
gnu/packages/syncthing.scm,
gnu/packages/synergy.scm,
gnu/packages/telephony.scm,
gnu/packages/terminals.scm,
gnu/packages/tex.scm,
gnu/packages/texinfo.scm,
gnu/packages/text-editors.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tmux.scm,
gnu/packages/tor.scm,
gnu/packages/toys.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/vim.scm,
gnu/packages/virtualization.scm,
gnu/packages/vlang.scm,
gnu/packages/vnc.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wireservice.scm,
gnu/packages/wm.scm,
gnu/packages/wxwidgets.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xml.scm,
gnu/packages/xorg.scm,
tests/lint.scm: Remove trailing ".git" from 'git-reference' URL.
 2020-07-12 23:08:15 +02:00
Ricardo Wurmus 54e04fed9c
gnu: r-depecher: Update to 1.4.1. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.4.1.
 2020-07-04 11:52:33 +02:00
Ricardo Wurmus c535717b6a
gnu: r-rsubread: Update to 2.2.3. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.3.
 2020-07-04 11:52:33 +02:00
Ricardo Wurmus c89afe7516
gnu: Add r-rgreat. 
* gnu/packages/bioconductor.scm (r-rgreat): New variable.
 2020-06-22 14:39:03 +02:00
Ricardo Wurmus f7d5721bc2
gnu: r-gdsfmt: Update to 1.24.1. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.24.1.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus 1893092d58
gnu: r-cicero: Update to 1.6.1. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.1.
[propagated-inputs]: Add r-stringi.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus ef58875705
gnu: r-cytoml: Update to 2.0.5. 
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.0.5.
[propagated-inputs]: Add r-xml2.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus 015ff0bf18
gnu: r-wiggleplotr: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.12.1.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus 8c06ce3c22
gnu: r-regioner: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.20.1.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus 214ee82742
gnu: r-flowworkspace: Update to 4.0.6. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.0.6.
 2020-06-14 09:13:22 +02:00
Ricardo Wurmus 9bc516bada
gnu: Add r-pcatools. 
* gnu/packages/bioconductor.scm (r-pcatools): New variable.
 2020-06-13 22:35:29 +02:00
Ricardo Wurmus 6b9e3b92c4
gnu: r-biodist: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.60.0.
 2020-06-13 01:20:02 +02:00
Ricardo Wurmus 6a88291d1a
gnu: r-biocworkflowtools: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.14.0.
 2020-06-13 01:20:02 +02:00
Ricardo Wurmus 723fa00d11
gnu: r-biocset: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.2.1.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:02 +02:00
Ricardo Wurmus 1759a13d6e
gnu: r-biocpkgtools: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.6.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 132abe5fcc
gnu: r-biocor: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 1c51821593
gnu: r-bioconcotk: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.8.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 4091eae2bc
gnu: r-multiassayexperiment: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.14.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus b56a3462ad
gnu: r-experimenthub: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.14.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 543c63f2ae
gnu: r-biocgraph: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.50.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 8b71b14158
gnu: r-bioccasestudies: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-bioccasestudies): Update to 1.50.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus a74a427bd8
gnu: r-ebarrays: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.52.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus affb4ab351
gnu: r-reactomepa: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.32.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 29b1702799
gnu: r-graphite: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.34.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus e09ca033f4
gnu: r-biobroom: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus c8cbde9ff6
gnu: r-bioassayr: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.26.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 06908a73fc
gnu: r-chemminer: Update to 3.40.0. 
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.40.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus d0badcc180
gnu: r-bigpint: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.4.0.
[propagated-inputs]: Add r-delayedarray and r-summarizedexperiment.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus eef9c99cd8
gnu: r-bigmemoryextras: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-bigmemoryextras): Update to 1.36.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus f31edb0191
gnu: r-biggr: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.24.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus 3116998610
gnu: r-hyperdraw: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.40.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus 0ff724616b
gnu: r-hypergraph: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.60.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus d65bdbb2cb
gnu: r-rsbml: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.46.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus a54fd40994
gnu: r-bifet: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.8.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus 7642517336
gnu: r-bicare: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.46.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus 2415576ecb
gnu: r-bhc: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.40.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus de91f15a74
gnu: r-bgx: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.54.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus 296992be08
gnu: r-bgmix: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.48.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus a9148d0686
gnu: r-unifiedwmwqpcr: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.24.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus 518050a75b
gnu: r-htqpcr: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.42.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus fbbaf5ae64
gnu: r-variancepartition: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus 41f7fe4aa9
gnu: r-variantfiltering: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.24.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus 49dd504192
gnu: r-timeseriesexperiment: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.6.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus 12b255f213
gnu: r-wavcluster: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.22.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus efb44ebca4
gnu: r-reqon: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.34.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus 83b7625cae
gnu: r-seqbias: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.36.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus 8112796db1
gnu: r-bigmelon: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.14.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus f4954b0b57
gnu: r-gdsfmt: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.24.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus 939ace9624
gnu: r-watermelon: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.32.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus cad8a5099a
gnu: r-roc: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-roc): Update to 1.64.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus b32808831c
gnu: r-genie3: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.10.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus e677c9b501
gnu: r-cicero: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.0.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 93235b1eb3
gnu: r-rcistarget: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.8.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus af66e35d31
gnu: r-depecher: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.4.0.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 7bec32fe53
gnu: r-mixomics: Update to 6.12.1. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.12.1.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 32bd0295c8
gnu: r-flowsom: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.20.0.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 8d5a83b7c6
gnu: r-cytoml: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.0.0.
[propagated-inputs]: Remove r-ncdfflow; add r-rcpparmadillo, r-rhdf5lib, and
r-tibble.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 8f5e16742d
gnu: r-opencyto: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.0.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 372caae6a9
gnu: r-flowstats: Update to 4.0.0. 
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.0.0.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus a9af09df17
gnu: r-flowworkspace: Update to 4.0.3. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.0.3.
[propagated-inputs]: Remove r-flowviz, r-gridextra, and r-rcolorbrewer; add
r-ggplot2, r-rcpparmadillo, r-rhdf5lib, and r-xml.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus bafade83c1
gnu: r-rprotobuflib: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.0.0.
[arguments]: Adjust phase "unpack-bundled-sources".
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus b347d6c32b
gnu: r-flowclust: Update to 3.26.0. 
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.26.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 062789b87a
gnu: r-flowviz: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.52.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 3407dfa61f
gnu: r-ggcyto: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.16.0.
[propagated-inputs]: Add r-hexbin.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 631b12ca71
gnu: r-ncdfflow: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.34.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 76b163d616
gnu: r-flowmeans: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.48.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus faff2de0da
gnu: r-flowcore: Update to 2.0.1. 
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.0.1.
[propagated-inputs]: Add r-rcpparmadillo and r-rprotobuflib.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 3c73d7c5e4
gnu: r-cytolib: Update to 2.0.3. 
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.0.3.
[inputs]: Add zlib.
[propagated-inputs]: Add r-bh, r-rcpp, r-rcpparmadillo, r-rcppparallel,
r-rhdf5lib, and r-rprotobuflib.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 0c2573e7f1
gnu: r-consensusclusterplus: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.52.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 6954950f4a
gnu: r-flowutils: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.52.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 5d63f69be9
gnu: r-rsubread: Update to 2.2.2. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.2.
[propagated-inputs]: Add r-matrix.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 5ca991bff9
gnu: r-annotatr: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.14.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 8b6f26e634
gnu: r-biosigner: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.16.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 77334168cf
gnu: r-ropls: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.20.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 905bbb13da
gnu: r-multidataset: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.16.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus cb941ca06d
gnu: r-birta: Update to 1.31.0. 
* gnu/packages/bioconductor.scm (r-birta): Update to 1.31.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus f50609aba5
gnu: r-birewire: Update to 3.20.0. 
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.20.0.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 1c5360ac3d
gnu: r-rqc: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.22.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus a84abf434d
gnu: r-quasr: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.28.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 2aff2724ef
gnu: r-rhisat2: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.4.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 201902bc05
gnu: r-sgseq: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.22.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 568c3929b6
gnu: r-rbowtie: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.28.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus ca8d80c90c
gnu: r-iclusterplus: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.24.0.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 173844fc75
gnu: r-biocfilecache: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 989b7bb625
gnu: r-arrmnormalization: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.28.0.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 8e5933a8e4
gnu: r-progeny: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.10.0.
[propagated-inputs]: Add r-dplyr, r-ggplot2, r-ggrepel, r-gridextra, and
r-tidyr.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 297854e682
gnu: r-rbowtie2: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.10.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 8fdca89b56
gnu: r-zfpkm: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.10.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 620cc4d976
gnu: r-webbioc: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.60.0.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 08c4d31400
gnu: r-widgettools: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.66.0.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus ee0f746088
gnu: r-wiggleplotr: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus 996f07b591
gnu: r-wrench: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.6.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus ff9f179a0c
gnu: r-xcms: Update to 3.10.1. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.10.1.
[propagated-inputs]: Remove r-multtest; add r-summarizedexperiment.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus 11cf2d7bb7
gnu: r-massspecwavelet: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.54.0.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus bcd06bdbff
gnu: r-xbseq: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus 1ec10e1987
gnu: r-roar: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-roar): Update to 1.24.0.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus a37a6ffb2d
gnu: r-yarn: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.14.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus 70d90ae76d
gnu: r-quantro: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.22.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus 761c9427bc
gnu: r-yaqcaffy: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.48.0.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus 9ce80f9356
gnu: r-simpleaffy: Update to 2.64.0. 
* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.64.0.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus f0439a1767
gnu: r-gcrma: Update to 2.60.0. 
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.60.0.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus 8a5abc62d5
gnu: r-yapsa: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.14.0.
[propagated-inputs]: Add r-biostrings, r-bsgenome-hsapiens-ucsc-hg19,
r-doparallel, r-dplyr, r-ggbeeswarm, r-magrittr, and r-pracma.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus 63c14717e3
gnu: r-somaticsignatures: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.24.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus a471def062
gnu: r-gtrellis: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.20.1.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus 6e397aad32
gnu: r-yamss: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.14.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus 4eccf8e5e5
gnu: r-ebimage: Update to 4.30.0. 
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.30.0.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus e059ab2503
gnu: r-aucell: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.10.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus 6314938884
gnu: r-allelicimbalance: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.26.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus 231898d5b9
gnu: r-annotationtools: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.62.0.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus 7866994c03
gnu: r-annotationfuncs: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.38.0.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus 6a65ac1537
gnu: r-abaenrichment: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.18.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus 19b39ac579
gnu: r-gofuncr: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.8.0.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus a007de81e5
gnu: r-atacseqqc: Update to 1.12.3. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.12.3.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus 785c759617
gnu: r-genomicscores: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.0.0.
[propagated-inputs]: Remove r-bsgenome; add r-delayedarray, r-hdf5array, and r-rhdf5.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus e6fbaf0cc7
gnu: r-motifstack: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.32.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus e65783e032
gnu: r-motifbreakr: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.2.0.
[propagated-inputs]: Add r-summarizedexperiment.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus da6a75fe00
gnu: r-motifdb: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.30.0.
[propagated-inputs]: Add r-genomicranges.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 352cfa3434
gnu: r-motiv: Update to 1.43.0. 
* gnu/packages/bioconductor.scm (r-motiv): Update to 1.43.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 6d02e17139
gnu: r-rgadem: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.36.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 7450edca0d
gnu: r-bacon: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.16.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 35bcfaefae
gnu: r-abseqr: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.6.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus b391b1e47c
gnu: r-a4: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-a4): Update to 1.36.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 2a91c987fd
gnu: r-a4base: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.36.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus e47f9f48d4
gnu: r-a4reporting: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.36.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 6afea4ea93
gnu: r-a4preproc: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.36.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 33c9c8563d
gnu: r-a4classif: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.36.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 4f2112add9
gnu: r-a4core: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.36.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus d200b4dc48
gnu: r-annaffy: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.60.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 500f7df840
gnu: r-mlinterfaces: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.68.0.
[propagated-inputs]: Add r-rcpp.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 63c8323ae9
gnu: r-clusterprofiler: Update to 3.16.0. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.16.0.
[propagated-inputs]: Remove r-ggplot2; add r-downloader and r-dplyr.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 43fb14cedc
gnu: r-enrichplot: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.8.1.
[propagated-inputs]: Add r-plyr and r-scatterpie.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 3a80f1cfae
gnu: r-dose: Update to 3.14.0. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.14.0.
[propagated-inputs]: Remove r-s4vectors.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 1dec455cb8
gnu: r-fgsea: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.14.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus b1d76ad0ca
gnu: r-sigpathway: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.56.0.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 8d30d59adf
gnu: r-anota: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-anota): Update to 1.36.0.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 621cd90406
gnu: r-gosemsim: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.14.0.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 65e0a7b181
gnu: r-heatplus: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.34.0.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus f2b686f61a
gnu: r-varianttools: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.30.0.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus ecb4e16519
gnu: r-triform: Update to 1.29.0. 
* gnu/packages/bioconductor.scm (r-triform): Update to 1.29.0.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 293fb8a147
gnu: r-ioniser: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 1465873c6c
gnu: r-linnorm: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus ae1c51a1c1
gnu: r-lumi: Update to 2.40.0. 
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.40.0.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 5f25d5f80d
gnu: r-methylumi: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.34.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 83e6ffdac1
gnu: r-minfi: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.34.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus e3fbcb28a4
gnu: r-bumphunter: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.30.0.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus debaa0f3ba
gnu: r-siggenes: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.62.0.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus d784a4784f
gnu: r-illuminaio: Update to 0.30.0. 
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.30.0.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus 159e427c9f
gnu: r-geoquery: Update to 2.56.0. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.56.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus 3fc1e03949
gnu: r-scone: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus ce9e19bc9b
gnu: r-scdd: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus 22c084ba9d
gnu: r-noiseq: Update to 2.31.0. 
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.31.0.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus d1f3c37134
gnu: r-monocle: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.16.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus 97cba97aa1
gnu: r-mast: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-mast): Update to 1.14.0.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus ee1e8fee89
gnu: r-icobra: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.16.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus 359a084aa3
gnu: r-ihw: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.16.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus 0653b8b082
gnu: r-lpsymphony: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.16.0.
[inputs]: Remove gfortran.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus 6e2dc9e385
gnu: r-karyoploter: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.14.0.
[propagated-inputs]: Add r-genomicfeatures.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 1e37caca52
gnu: r-ebseq: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.28.0.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 6a7cfd5f1f
gnu: r-dnacopy: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.62.0.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 866939b76d
gnu: r-copynumber: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.28.0.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 9697afb10e
gnu: r-chipexoqual: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 784d1670b7
gnu: r-savr: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-savr): Update to 1.26.0.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 265b645075
gnu: r-destiny: Update to 3.2.0. 
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.2.0.
[propagated-inputs]: Add r-nbconvertr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus a8351d467c
gnu: r-biocsingular: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.4.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus f5864c11a4
gnu: r-biocneighbors: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.6.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus ae0fcaa6fd
gnu: r-ruvseq: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.22.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 14f40ae830
gnu: r-dnabarcodes: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.18.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 437bc4dda9
gnu: r-inspect: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.18.0.
[propagated-inputs]: Add r-rtracklayer.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 46a973bc24
gnu: r-plgem: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.60.0.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus ee73dea61b
gnu: r-rots: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.16.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus a6251d6e8b
gnu: r-glimma: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.16.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus 7fbd97745b
gnu: r-goseq: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.40.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus c7be592fb4
gnu: r-ctc: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.62.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus 76dd036e16
gnu: r-genomicinteractions: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.22.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus 861a903f14
gnu: r-interactionset: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.16.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus 6b78a91b75
gnu: r-riboseqr: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.22.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus 7aae05a953
gnu: r-riboprofiling: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.18.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus ef1d3231c3
gnu: r-chipcomp: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.18.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus 9834c36724
gnu: r-bayseq: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.22.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus f4ef564595
gnu: r-qdnaseq: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.24.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus de4a352e8a
gnu: r-cghcall: Update to 2.50.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.50.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus bd93ec4cf0
gnu: r-cghbase: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.48.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus 49d589e530
gnu: r-marray: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.66.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus dc24de46ad
gnu: r-chippeakanno: Update to 3.22.2. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.22.2.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus 7d37c6d914
gnu: r-graph: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.66.0.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus 8cadf253c3
gnu: r-multtest: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.44.0.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus b47b649ae5
gnu: r-diffbind: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.16.0.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus f9a247590e
gnu: r-qvalue: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus ace82f805f
gnu: r-oligo: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.52.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus b628842f7e
gnu: r-oligoclasses: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.50.0.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus 53e4201937
gnu: r-geneplotter: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.66.0.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus 7f94cf0184
gnu: r-reportingtools: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.28.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus 7f34dd58e9
gnu: r-regioner: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus 07bea01092
gnu: r-hpar: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.30.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus c2f4ad96f5
gnu: r-annotate: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.66.0.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus acaf8a2342
gnu: r-affxparser: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.60.0.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus fa61069781
gnu: r-affycoretools: Update to 1.60.1. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.60.1.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 36d4ca410d
gnu: r-affycontam: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.46.0.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 251c18f1ed
gnu: r-affycompatible: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.48.0.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 66aeb1b46d
gnu: r-affycomp: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.64.0.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 2e15c16f1e
gnu: r-biocgenerics: Update to 0.34.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.34.0.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus bc217e4c0c
gnu: r-biocversion: Update to 3.11.1. 
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.11.1.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 1ab0380db9
gnu: r-cummerbund: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.30.0.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 751fa8ff71
gnu: r-coverageview: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.26.0.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 725eea00da
gnu: r-ideoviz: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.24.0.
 2020-06-13 01:19:47 +02:00
Roel Janssen 06fc1a5142
gnu: Add r-cummerbund. 
* gnu/packages/bioconductor.scm (r-cummerbund): New variable.
 2020-04-27 11:46:08 +02:00
Roel Janssen 0c0ef9c5a6
gnu: Add r-coverageview. 
* gnu/packages/bioconductor.scm (r-coverageview): New variable.
 2020-04-27 10:57:22 +02:00
Roel Janssen 8ce240fdbf
gnu: Add r-bsgenome-hsapiens-ucsc-hg38. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): New variable.
 2020-04-27 10:43:51 +02:00
Roel Janssen cb1ab0352b
gnu: Add r-karyoploter. 
* gnu/packages/bioconductor.scm (r-karyoploter): New variable.
 2020-04-27 10:37:42 +02:00
Roel Janssen e8d435f7a2
gnu: Add r-ideoviz. 
* gnu/packages/bioconductor.scm (r-ideoviz): New variable.
 2020-04-27 10:24:20 +02:00
Roel Janssen 1408e2abeb
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Fix description. 
* gnu/packages/bioconductor.scm: Use two spaces after ending a sentence.
 2020-04-26 21:47:19 +02:00
Roel Janssen 63daca1e92
gnu: Add r-snplocs-hsapiens-dbsnp144-grch37. 
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): New
  variable.
 2020-04-26 21:34:49 +02:00
Roel Janssen 886125d791
gnu: Add r-motifbreakr. 
* gnu/packages/bioconductor.scm (r-motifbreakr): New variable.
 2020-04-26 21:24:03 +02:00
Roel Janssen 3699bcf54a
gnu: Add r-motifdb. 
* gnu/packages/bioconductor.scm (r-motifdb): New variable.
 2020-04-26 21:07:45 +02:00
Roel Janssen ec20858a6a
gnu: Add r-pasilla. 
* gnu/packages/bioconductor.scm (r-pasilla): New variable.
 2020-04-26 21:02:00 +02:00
Ricardo Wurmus 3f782a6d95
gnu: r-destiny: Add missing input. 
* gnu/packages/bioconductor.scm (r-destiny)[native-inputs]: Add r-nbconvertr.
 2020-04-16 07:07:23 +02:00
Ricardo Wurmus 506cbeabaa
gnu: r-bacon: Add missing input. 
* gnu/packages/bioconductor.scm (r-bacon)[native-inputs]: Add r-knitr.
 2020-04-16 07:07:23 +02:00
Ricardo Wurmus faaf2b3571
gnu: r-bioassayr: Add missing input. 
* gnu/packages/bioconductor.scm (r-bioassayr)[native-inputs]: Add r-knitr.
 2020-04-16 07:07:23 +02:00
Ricardo Wurmus 229736aa52
gnu: r-activepathways: Add missing input. 
* gnu/packages/bioconductor.scm (r-activepathways)[native-inputs]:
Add r-knitr.
 2020-04-16 07:07:23 +02:00
Ricardo Wurmus 5ef2b749b5
gnu: r-dose: Add missing input. 
* gnu/packages/bioconductor.scm (r-dose)[native-inputs]: Add r-knitr.
 2020-04-16 07:07:23 +02:00
Ricardo Wurmus 9a6bc4c214
gnu: r-atacseqqc: Update to 1.10.4. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.4.
 2020-04-14 16:41:01 +02:00
Ricardo Wurmus f4be4995d6
gnu: r-a4base: Update to 1.34.1. 
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.34.1.
 2020-04-14 16:41:01 +02:00
Ricardo Wurmus 851081bf34
gnu: r-varianttools: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.28.1.
 2020-04-14 16:41:01 +02:00
Ricardo Wurmus 64cf2ff90e
gnu: r-genomicinteractions: Update to 1.20.3. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.3.
 2020-04-14 16:41:00 +02:00
Vagrant Cascadian e40ecf8a2c
gnu: r-wavcluster: Fix grammar of "allows to integrate" to "integrates". 
* gnu/packages/bioconductor (r-wavcluster): Fix grammar.
 2020-04-12 14:59:45 -07:00
Vagrant Cascadian 8c4bf6c29c
gnu: r-aucell: Fix grammar of "allows to identify" to "identifies". 
* gnu/packages/bioconductor (r-aucell): Fix grammar.
 2020-04-12 14:59:43 -07:00
Vagrant Cascadian 23c8ef7124
gnu: r-fgsea: Various grammar and spelling fixes. 
* gnu/packages/bioconductor (r-fgsea): Fix spelling of "standard".
  Fix grammar of "allows to make" to "makes".
 2020-04-12 14:43:52 -07:00
Ricardo Wurmus 4ecba23091
gnu: r-biocworkflowtools: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.12.1.
[native-inputs]: Add r-knitr.
 2020-04-01 11:15:27 +02:00
Ricardo Wurmus 9669bc170a
gnu: r-mixomics: Update to 6.10.9. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.9.
[native-inputs]: Add r-knitr.
 2020-04-01 11:15:27 +02:00
Ricardo Wurmus d49e3f0190
gnu: r-cytoml: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-cytoml): Update to  1.12.1.
[native-inputs]: Add r-knitr.
 2020-04-01 11:15:26 +02:00
Ricardo Wurmus 028fd6f786
gnu: r-gofuncr: Update to 1.6.1. 
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.6.1.
[native-inputs]: Add r-knitr.
 2020-04-01 11:15:26 +02:00
Ricardo Wurmus 81a37891ec
gnu: r-genomicinteractions: Update to 1.20.2. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.2.
[native-inputs]: Add r-knitr.
 2020-04-01 11:15:26 +02:00
Ricardo Wurmus 2ba5253044
gnu: r-multiassayexperiment: Update to 1.12.6. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.6.
 2020-03-27 11:21:13 +01:00
Ricardo Wurmus 51d1a7a2ef
gnu: r-mast: Add r-knitr to native inputs. 
* gnu/packages/bioconductor.scm (r-mast)[native-inputs]: Add r-knitr.
 2020-03-25 09:40:05 +01:00
Ricardo Wurmus 5d45d71170
gnu: r-multiassayexperiment: Update to 1.12.5. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.5.
[native-inputs]: Add r-knitr.
 2020-03-24 11:06:01 +01:00
Ricardo Wurmus 1f2f01aed5
gnu: r-bigpint: Update to 1.2.2. 
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.2.2.
[native-inputs]: Add r-knitr.
 2020-03-24 11:06:01 +01:00
Ricardo Wurmus 4bcb38c801
gnu: r-biosigner: Update to 1.14.4. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.4.
 2020-03-24 11:06:01 +01:00
Ricardo Wurmus d5951dc43a
gnu: r-gosemsim: Update to 2.12.1. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.1.
[native-inputs]: Add r-knitr.
 2020-03-24 11:06:01 +01:00
Ricardo Wurmus 2d6a7bca9e
gnu: r-biocpkgtools: Update to 1.4.6. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.4.6.
[propagated-inputs]: Add r-biocfilecache, r-rappdirs, r-rlang, and
r-tidyselect.
[native-inputs]: Add r-knitr.
 2020-03-19 10:06:27 +01:00
Ricardo Wurmus f7100edaf6
gnu: r-biosigner: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.2.
[native-inputs]: Remove r-rmarkdown, pandoc, and pandoc-citeproc.
 2020-03-19 10:06:27 +01:00
Tobias Geerinckx-Rice 486a080048
gnu: r-htqpcr: Update home page. 
* gnu/packages/bioconductor.scm (r-htqpcr)[home-page]: Use HTTPS link
to PDF paper.
 2020-03-17 23:09:24 +01:00
Ricardo Wurmus 6bd6097ed5
gnu: r-cicero: Update to 1.4.4. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.4.
[native-inputs]: Add r-knitr.
 2020-03-12 15:15:02 +01:00
Ricardo Wurmus 0754fefb75
gnu: r-ggcyto: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.14.1.
[native-inputs]: Add r-knitr.
 2020-03-12 15:15:02 +01:00
Ricardo Wurmus e0061f5125
gnu: r-mlinterfaces: Update to 1.66.5. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.5.
 2020-03-12 15:15:02 +01:00
Ricardo Wurmus dc30cc0300
gnu: r-atacseqqc: Update to 1.10.3. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.3.
[native-inputs]: Add r-knitr.
 2020-03-08 16:02:04 +01:00
Ricardo Wurmus 67133278ec
gnu: r-multiassayexperiment: Update to 1.12.4. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.4.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus bf3722f9db
gnu: r-depecher: Update to 1.2.2. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.2.
[native-inputs]: Add r-knitr.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus a2512e436b
gnu: r-xcms: Update to 3.8.2. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.2.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus f0aaa4482a
gnu: r-yamss: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.1.
 2020-03-07 19:31:47 +01:00
Tobias Geerinckx-Rice b69c770305
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.10.0. 
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Update to 3.10.0.
 2020-03-02 21:46:27 +01:00
Ricardo Wurmus 5f5e0830f6
gnu: r-multiassayexperiment: Update to 1.12.3. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.3.
 2020-03-01 23:38:33 +01:00
Ricardo Wurmus e766ba9a52
gnu: r-cicero: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.2.
 2020-03-01 23:38:26 +01:00
Ricardo Wurmus 0a30342def
gnu: r-mlinterfaces: Update to 1.66.4. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.4.
 2020-03-01 23:38:19 +01:00
Ricardo Wurmus aece78fe2f
gnu: r-biocneighbors: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.4.2.
 2020-03-01 23:38:12 +01:00
Ricardo Wurmus 8351faae8a
gnu: r-chippeakanno: Update to 3.20.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.20.1.
 2020-03-01 23:38:06 +01:00
Ricardo Wurmus 975cfe26e1
gnu: r-gkmsvm: Update to 0.80.0. 
* gnu/packages/bioconductor.scm (r-gkmsvm): Update to 0.80.0.
[propagated-inputs]: Remove r-biocgenerics, r-biostrings, r-genomeinfodb,
r-iranges, r-rtracklayer, and r-s4vectors.
 2020-03-01 23:21:15 +01:00
Mădălin Ionel Patrașcu c51c0033d0
gnu: Add r-bsgenome-hsapiens-ncbi-grch38. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ncbi-grch38): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-02-25 15:37:27 +01:00
Ricardo Wurmus 5bf7102265
gnu: r-genomicinteractions: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.1.
 2020-02-22 23:39:27 +01:00
Ricardo Wurmus 5ea4f604ab
gnu: r-cicero: Update to 1.4.1. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.1.
[propagated-inputs]: Add r-tidyr.
 2020-02-22 23:39:20 +01:00
Ricardo Wurmus 8017eb0ae8
gnu: r-ggm: Move to (gnu packages bioconductor). 
* gnu/packages/cran.scm (r-ggm): Move this variable from here...
* gnu/packages/bioconductor.scm (r-ggm): ...to here.
 2020-02-22 20:42:15 +01:00
Ricardo Wurmus d66901e2c3
gnu: r-depecher: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.1.
 2020-02-19 23:00:13 +01:00
Ricardo Wurmus f607098f05
gnu: r-mixomics: Update to 6.10.8. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.8.
 2020-02-19 23:00:08 +01:00
Ricardo Wurmus e01fa33baa
gnu: r-rsubread: Update to 2.0.1. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.0.1.
 2020-02-19 23:00:02 +01:00
Ricardo Wurmus f86549cbb6
gnu: r-atacseqqc: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.2.
 2020-02-19 22:59:56 +01:00
Ricardo Wurmus 776e98fe05
gnu: r-heatplus: Update to 2.32.1. 
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.32.1.
 2020-02-19 22:59:49 +01:00
Ricardo Wurmus effbf7d986
gnu: r-biocsingular: Update to 1.2.2. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.2.
 2020-02-19 22:59:44 +01:00
Ricardo Wurmus b7e86efd3b
gnu: r-inspect: Update to 1.16.3. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.3.
 2020-02-19 22:59:35 +01:00
Ricardo Wurmus be1042b326
gnu: r-nmf: Update to 0.22.0. 
* gnu/packages/bioconductor.scm (r-nmf): Update to 0.22.0.
[propagated-inputs]: Add r-biobase and r-biocmanager.
 2020-02-19 18:57:31 +01:00
Ricardo Wurmus 7c9d8a5d58
gnu: r-nmf: Move to (gnu packages bioconductor). 
* gnu/packages/statistics.scm (r-nmf): Move this variable from here...
* gnu/packages/bioconductor.scm (r-nmf): ...to here.
 2020-02-19 18:46:22 +01:00
Tobias Geerinckx-Rice c756328e66
gnu: r-lpsymphony: Use HTTPS home page. 
* gnu/packages/bioconductor.scm (r-lpsymphony)[home-page]: Use HTTPS.
 2020-02-11 07:10:31 +01:00
Tobias Geerinckx-Rice 5e1f2362c1
gnu: r-codedepends: Use HTTPS home page. 
* gnu/packages/bioconductor.scm (r-codedepends)[home-page]: Use HTTPS.
 2020-02-11 07:10:31 +01:00
Tobias Geerinckx-Rice 798ca8d08e
gnu: r-multiassayexperiment: Use HTTPS home page. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment)[home-page]: Use HTTPS.
 2020-02-11 07:10:29 +01:00
Roel Janssen a38bf7c843
gnu: Add r-deconstructsigs. 
* gnu/packages/bioconductor.scm (r-deconstructsigs): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-01-27 22:31:19 +01:00
Ricardo Wurmus 0dfaebfa2e
gnu: r-multiassayexperiment: Update to 1.12.2. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.2.
 2020-01-27 20:48:36 +01:00
Ricardo Wurmus c5d75df366
gnu: r-ropls: Update to 1.18.8. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.8.
 2020-01-27 20:48:36 +01:00
Ricardo Wurmus 062cbc4f2b
gnu: r-destiny: Update to 3.0.1. 
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.0.1.
 2020-01-27 20:48:36 +01:00
Ricardo Wurmus fd6412cd2c
gnu: r-metap: Update to 1.3. 
* gnu/packages/bioconductor.scm (r-metap): Update to 1.3.
 2020-01-27 16:33:27 +01:00
Vagrant Cascadian 5b98473a1f
gnu: r-biocset: Fix spelling of "ability". 
* gnu/packages/bioconductor (r-biocset)[description]: Fix typo.
 2020-01-24 02:38:13 -08:00
Tobias Geerinckx-Rice 99db6db7be
gnu: Use HTTPS for bioconductor.org. 
* gnu/packages/bioinformatics.scm (r-homo-sapiens)[source]: Use HTTPS.
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked,
r-cghcall, r-diffbind, r-cghbase, r-ripseeker, r-chippeakanno,
r-qdnaseq, r-marray, r-multtest)[home-page]: Likewise.
* gnu/packages/graph.scm (r-rgraphviz)[home-page]: Likewise.
 2020-01-21 00:43:39 +01:00
Ricardo Wurmus d1ac643062
gnu: r-variancepartition: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.16.1.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus e8ccb98a08
gnu: r-flowworkspace: Update to 3.34.1. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 3.34.1.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus 3f42bd81a5
gnu: r-ropls: Update to 1.18.6. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.6.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus 516fa945b3
gnu: r-mlinterfaces: Update to 1.66.2. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.2.
[propagated-inputs]: Remove r-rda.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus ac9a9c374c
gnu: r-clusterprofiler: Update to 3.14.3. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.3.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus 99e2a24978
gnu: r-inspect: Update to 1.16.2. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.2.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus 7a8fcdaccc
gnu: r-regioner: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.18.1.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus f8f181ae41
gnu: r-affycoretools: Update to 1.58.4. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.4.
[propagated-inputs]: Add r-glimma.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus bd824de3ad
gnu: r-inspect: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.1.
[propagated-inputs]: Add r-gdata.
 2019-12-27 21:30:26 +01:00
Ricardo Wurmus c314ff7cd4
gnu: r-multiassayexperiment: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.1.
 2019-12-27 21:30:26 +01:00
Ricardo Wurmus 0718948912
gnu: r-rgadem: Update to 2.34.1. 
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.34.1.
[propagated-inputs]: Add r-genomicranges.
 2019-12-27 21:30:26 +01:00
Ricardo Wurmus 0be4d7de9c
gnu: r-clusterprofiler: Update to 3.14.2. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.2.
 2019-12-27 21:30:26 +01:00
Ricardo Wurmus 7621bf2d19
gnu: r-enrichplot: Update to 1.6.1. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.6.1.
 2019-12-27 21:30:26 +01:00
Ricardo Wurmus eb6d1adf15
gnu: r-biocsingular: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.1.
 2019-12-27 21:30:26 +01:00
Ricardo Wurmus be94400cd4
gnu: r-affycoretools: Update to 1.58.3. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.3.
 2019-12-27 21:30:26 +01:00
Ricardo Wurmus 77e2de3654
gnu: Add r-biodist. 
* gnu/packages/bioconductor.scm (r-biodist): New variable.
 2019-12-18 15:29:08 +01:00
Ricardo Wurmus 0156297f29
gnu: Add r-biocworkflowtools. 
* gnu/packages/bioconductor.scm (r-biocworkflowtools): New variable.
 2019-12-18 15:29:08 +01:00
Ricardo Wurmus 43b66e3f7c
gnu: Add r-biocset. 
* gnu/packages/bioconductor.scm (r-biocset): New variable.
 2019-12-18 15:29:08 +01:00
Ricardo Wurmus 4a18112dfb
gnu: Add r-biocpkgtools. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): New variable.
 2019-12-18 15:29:08 +01:00
Ricardo Wurmus 4d12c1e335
gnu: Add r-biocor. 
* gnu/packages/bioconductor.scm (r-biocor): New variable.
 2019-12-18 15:29:08 +01:00
Ricardo Wurmus c2b36a0441
gnu: Add r-bioconcotk. 
* gnu/packages/bioconductor.scm (r-bioconcotk): New variable.
 2019-12-18 15:29:08 +01:00
Ricardo Wurmus 0678479391
gnu: Add r-multiassayexperiment. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): New variable.
 2019-12-18 15:29:08 +01:00
Ricardo Wurmus 244270e6ae
gnu: Add r-experimenthub. 
* gnu/packages/bioconductor.scm (r-experimenthub): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus 49f0860be0
gnu: Add r-biocgraph. 
* gnu/packages/bioconductor.scm (r-biocgraph): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus f180be2923
gnu: Add r-bioccasestudies. 
* gnu/packages/bioconductor.scm (r-bioccasestudies): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus 21afe920f1
gnu: Add r-ebarrays. 
* gnu/packages/bioconductor.scm (r-ebarrays): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus f388834e11
gnu: Add r-reactomepa. 
* gnu/packages/bioconductor.scm (r-reactomepa): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus c373223e63
gnu: Add r-graphite. 
* gnu/packages/bioconductor.scm (r-graphite): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus ff1146b9b1
gnu: Add r-curatedtcgadata. 
* gnu/packages/bioconductor.scm (r-curatedtcgadata): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus 6f15ea2415
gnu: Add r-reactome-db. 
* gnu/packages/bioconductor.scm (r-reactome-db): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus 29fd736a66
gnu: Add r-biobroom. 
* gnu/packages/bioconductor.scm (r-biobroom): New variable.
 2019-12-17 20:02:18 +01:00
Ricardo Wurmus 48bcbef07a
gnu: Add r-bioassayr. 
* gnu/packages/bioconductor.scm (r-bioassayr): New variable.
 2019-12-17 20:02:18 +01:00
Ricardo Wurmus 991554fc92
gnu: Add r-chemminer. 
* gnu/packages/bioconductor.scm (r-chemminer): New variable.
 2019-12-17 20:02:18 +01:00
Ricardo Wurmus d38775b13f
gnu: Add r-bigpint. 
* gnu/packages/bioconductor.scm (r-bigpint): New variable.
 2019-12-17 20:02:18 +01:00
Ricardo Wurmus 820373dbc8
gnu: Add r-bigmemoryextras. 
* gnu/packages/bioconductor.scm (r-bigmemoryextras): New variable.
 2019-12-17 20:02:18 +01:00
Ricardo Wurmus 6ca6f8663b
gnu: Add r-biggr. 
* gnu/packages/bioconductor.scm (r-biggr): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus 5aef09bd0e
gnu: Add r-hyperdraw. 
* gnu/packages/bioconductor.scm (r-hyperdraw): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus 75a8bb3185
gnu: Add r-hypergraph. 
* gnu/packages/bioconductor.scm (r-hypergraph): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus e823337c6e
gnu: Add r-rsbml. 
* gnu/packages/bioconductor.scm (r-rsbml): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus 40fe63ad8a
gnu: Add r-bifet. 
* gnu/packages/bioconductor.scm (r-bifet): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus de9374b73c
gnu: Add r-bicare. 
* gnu/packages/bioconductor.scm (r-bicare): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus 6bd50acf41
gnu: Add r-bhc. 
* gnu/packages/bioconductor.scm (r-bhc): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus 75eb1149f3
gnu: Add r-bgx. 
* gnu/packages/bioconductor.scm (r-bgx): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus d11d6feafa
gnu: Add r-bgmix. 
* gnu/packages/bioconductor.scm (r-bgmix): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus 6e10ac0780
gnu: r-destiny: Update to 3.0.0. 
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.0.0.
[propagated-inputs]: Add r-ggplot-multistats, r-irlba, r-knn-covertree,
r-pcamethods, r-rcpphnsw, r-rspectra, r-singlecellexperiment, r-tidyr, and
r-tidyselect; remove r-igraph.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus b4ee414880
gnu: r-siggenes: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.60.0.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus 4efdac562b
gnu: r-bumphunter: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.28.0.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus dfd4287cba
gnu: r-minfi: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.32.0.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus b57cffb974
gnu: r-methylumi: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.32.0.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus 8f7bc872e1
gnu: r-lumi: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.38.0.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus a2877d6970
gnu: r-linnorm: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.10.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus 1b890c3231
gnu: r-ioniser: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.10.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus a18f325e0a
gnu: r-triform: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-triform): Update to 1.28.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus 9b72bbf784
gnu: r-varianttools: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.28.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus 9f218627d6
gnu: r-heatplus: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.32.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus c245ec3d49
gnu: r-gosemsim: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus 5ed767521c
gnu: r-anota: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-anota): Update to 1.34.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus 869965df1c
gnu: r-sigpathway: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.54.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus b4e1268c7b
gnu: r-fgsea: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.12.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus 166b3c2da6
gnu: r-dose: Update to 3.12.0. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.12.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus 0654a9bc3b
gnu: r-enrichplot: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.6.0.
[propagated-inputs]: Remove r-upsetr.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus 08c01b7e0e
gnu: r-clusterprofiler: Update to 3.14.0. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus 6374984a20
gnu: r-mlinterfaces: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus fc4a9dd579
gnu: r-annaffy: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.58.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus 4ed18ddc0f
gnu: r-a4core: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.34.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus 102b982cbe
gnu: r-a4classif: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.34.0.
 2019-12-15 15:39:11 +01:00