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7263 Commits (c0aacfa5b903f1a0b9038aee7fe8f7f120f9d734)

Author SHA1 Message Date
Ricardo Wurmus f5ca44b86e gnu: glade: Update to 3.18.5.
* gnu/packages/gnome.scm (glade): Update to 3.18.5.
[arguments]: Disable tests; add "fix-docbook" phase.
[inputs]: Replace "gtk+-2" with "gtk+".
[native-inputs]: Add "itstool", "libxslt", "docbook-xml", "docbook-xsl";
replace "python" with "python-2".
2016-01-15 22:29:37 +01:00
Ludovic Courtès 89b48232f8 gnu: automake: Adjust to deal with Perl 5.22.
Fixes <http://bugs.gnu.org/22375>.

* gnu/packages/patches/automake-regexp-syntax.patch: New file.
* gnu/packages/autotools.scm (automake)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
2016-01-15 14:23:46 +01:00
Mark H Weaver 45f2ffb48c gnu: openssh: Update to 7.1p2.
* gnu/packages/ssh.scm (openssh): Update to 7.1p2.
2016-01-15 02:46:12 -05:00
Mark H Weaver 1beec63ac8 Revert "gnu: openssh: Update to 7.1p2 [fixes CVE-0216-0778]."
This reverts commit 6d139e53b5.
2016-01-15 02:45:58 -05:00
Mark H Weaver 6d139e53b5 gnu: openssh: Update to 7.1p2 [fixes CVE-0216-0778].
* gnu/packages/ssh.scm (openssh): Update to 7.1p2.
2016-01-14 10:39:00 -05:00
David Thompson df1f1d6936 gnu: Add docker-compose.
* gnu/packages/docker.scm (docker-compose): New variable.
2016-01-14 09:17:12 -05:00
David Thompson b42c9c8124 gnu: Add python-dockerpty.
* gnu/packages/docker.scm (python-dockerpty): New variable.
2016-01-14 09:16:22 -05:00
David Thompson d020bfc2df gnu: Add python-docker-py.
* gnu/packages/docker.scm: New file.
* Makefile.am (GNU_SYSTEM_MODULES): Add it.
2016-01-14 09:16:22 -05:00
David Thompson 67c52bb3e7 gnu: Add python-websocket-client.
* gnu/packages/python.scm (python-websocket-client): New variable.
2016-01-14 09:12:23 -05:00
David Thompson 210bf49754 gnu: Add python-texttable.
* gnu/packages/python.scm (python-texttable, python2-texttable): New
variables.
2016-01-14 09:12:23 -05:00
David Thompson b3667afbd2 gnu: Update python-jsonschema to 2.5.1.
* gnu/packages/python.scm (python-jsonschema): Update to 2.5.1.
[inputs]: Add python-vcversioner.
2016-01-14 09:12:06 -05:00
David Thompson ea521b42c2 gnu: Add python-vcversioner.
* gnu/packages/python.scm (python-vcversioner, python2-vcversioner): New
variables.
2016-01-14 09:05:19 -05:00
David Thompson e90051808b gnu: Add version 2.7 variant of python-requests.
* gnu/packages/python.scm (python-requests-2.7): New variable.
2016-01-14 09:05:19 -05:00
Ricardo Wurmus 3141b83d4d gnu: r-go-db: Add missing input.
* gnu/packages/bioinformatics.scm (r-go-db)[propagated-inputs]: Add
  "r-annotationdbi".
2016-01-14 14:43:59 +01:00
Ricardo Wurmus d7786ce9b0 gnu: r-sparsem: Add missing "gfortran" input.
* gnu/packages/statistics.scm (r-sparsem)[inputs]: Add "gfortran".
2016-01-14 14:43:59 +01:00
Ricardo Wurmus 0047d26a22 gnu: bowtie: Update to 2.2.6.
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.6.
[source]: Remove patch; do not set CC and CPP variables.
[inputs]: Add "tbb".
[arguments]: Pass "prefix" and "WITH_TBB" make flags; remove custom
"install" phase.
* gnu/packages/patches/bowtie-fix-makefile.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch file.
2016-01-14 14:43:25 +01:00
Efraim Flashner 2d12284d38 gnu: gnupg: Add TOFU support.
* gnu/packages/gnupg.scm (gnupg)[inputs]: Add sqlite.
2016-01-14 15:05:36 +02:00
Ludovic Courtès 76002e54f2 gnu: gawk: Protect against random failures of the 'fts' test.
* gnu/packages/patches/gawk-fts-test.patch: New file.
* gnu/packages/gawk.scm (gawk)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
2016-01-14 10:43:08 +01:00
Ben Woodcroft 6b6f7d6a0e gnu: orfm: Update to 0.5.3.
* gnu/packages/bioinformatics.scm (orfm): Update to 0.5.3.
[native-inputs]: Add inputs required for tests.
[description]: Add commas.
2016-01-14 08:00:10 +10:00
Ben Woodcroft 3d84a99e73 gnu: Add ruby-bio-commandeer.
* gnu/packages/ruby.scm (ruby-bio-commandeer): New variable.
2016-01-14 08:00:02 +10:00
Ben Woodcroft 7c033c4627 gnu: Add ruby-systemu.
* gnu/packages/ruby.scm (ruby-systemu): New variable.
2016-01-14 07:51:44 +10:00
Ricardo Wurmus ca7ef4d418 gnu: cross-gcc-arguments: Enable C++, disable building of libstdc++-v3.
* gnu/packages/cross-base.scm (cross-gcc-arguments)[arguments]: Disable
  building libstdc++-v3 and enable building C++ compiler.
2016-01-13 22:32:37 +01:00
Ludovic Courtès 8c986ab120 Merge branch 'master' into core-updates 2016-01-13 18:18:48 +01:00
Ricardo Wurmus e5a19fed19 gnu: julia: Update to 0.4.3.
* gnu/packages/julia.scm (julia): Update to 0.4.3.
(libuv-julia): Update to 07730c4bd595.
2016-01-13 17:05:38 +01:00
Mark H Weaver 75418ae0fd gnu: isc-dhcp: Update to 4.3.3-P1 [fixes CVE-2015-8605].
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.3-P1.
2016-01-13 09:38:57 -05:00
Ricardo Wurmus c44734115a gnu: samtools: Update to 1.3.
* gnu/packages/bioinformatics.scm (samtools): Update to 1.3.
[arguments]: Enable tests for all architectures; set ncurses in
configure-flags instead of make-flags; simplify "patch-tests" phase;
restore "configure" phase.
2016-01-13 15:12:22 +01:00
Ludovic Courtès 98f2339189 gnu: skribilo: Update to 0.9.3.
* gnu/packages/skribilo.scm (skribilo): Update to 0.9.3.
[native-inputs]: New field.
2016-01-13 11:13:34 +01:00
Eric Bavier c91d3fb7f4 gnu: boost: Update to 1.60.0.
* gnu/packages/boost.scm (boost): Update to 1.60.0.
  [source]: Remove patch.
* gnu/packages/patches/boost-mips-avoid-m32.patch: Delete patch
* gnu-system.am (dist_patch_DATA): Remove patch.

Also fix dependent packages:

* gnu/packages/patches/csound-header-ordering.patch: New patch.
* gnu/packages/audio.scm (csound)[source]: Use it.
  [arguments]: Add 'set-flags phase.
* gnu/packages/patches/libcmis-fix-test-onedrive.patch: New patch.
* gnu/packages/libreoffice.scm (libcmis)[source]: Use it.
  (libreoffice)[arguments]: Add LDFLAGS to #:configure-flags.
  (librevenge)[inputs]: Move boost from here...
  [propogated-inputs]: to here.
  [arguments]: Add LDFLAGS to #:configure-flags.
* gnu/packages/patches/openimageio-boost-1.60.patch: New patch.
* gnu/packages/graphics.scm (openimageio): Use it.
* gnu-system.am (dist_patch_DATA): Add patches.
2016-01-12 21:07:53 +01:00
Eric Bavier 3abe8136fd gnu: boost: Use modify-phases.
* gnu/packages/boost.scm (boost)[arguments]: Use modify-phases.
2016-01-12 20:53:14 +01:00
Mark H Weaver 203795acea gnu: perl: Add fix for CVE-2015-8607.
* gnu/packages/patches/perl-CVE-2015-8607.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/perl.scm (perl)[source]: Add patch.
2016-01-12 13:12:07 -05:00
Mark H Weaver ce3ac6670c gnu: perl: Update to 5.22.1.
* gnu/packages/perl.scm (perl): Update to 5.22.1.
2016-01-12 13:10:05 -05:00
Mark H Weaver 16aa649117 gnu: sudo: Add fix for CVE-2015-5602.
* gnu/packages/patches/sudo-CVE-2015-5602.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (sudo)[source]: Add patch.
2016-01-12 11:23:06 -05:00
Efraim Flashner 9d9951d6a6 gnu: global: Use modify-phases syntax.
* gnu/packages/code.scm (global)[arguments]: Use modify-phases syntax.
2016-01-12 14:47:10 +02:00
Efraim Flashner 94c3a6f1a6 gnu: global: Update to 6.5.2.
* gnu/packages/code.scm (global): Update to 6.5.2.
2016-01-12 14:39:15 +02:00
Ricardo Wurmus 9f40b1171b gnu: icedtea-6: Fix directory name in "unpack" phase.
* gnu/packages/java.scm (icedtea-6)[arguments]: Change the directory
  prefix in the "unpack" phase to "icedtea6-".
2016-01-12 11:39:21 +01:00
Mark H Weaver 6b0d24b17c gnu: linux-libre: Update to 4.4.
* gnu/packages/linux.scm (linux-libre): Update to 4.4.
* gnu/packages/linux-libre-i686.conf,
  gnu/packages/linux-libre-x86_64.conf: Update from
  <https://jxself.org/git/kernel-configs.git>.
2016-01-11 19:13:37 -05:00
Ben Woodcroft 81f3e0c1f3 gnu: Add fxtract.
* gnu/packages/bioinformatics.scm (fxtract): New variable.
2016-01-12 07:49:19 +10:00
Ben Woodcroft 65e84e3176 gnu: ruby: Update to 2.3.0.
* gnu/packages/ruby.scm (ruby): Update to 2.3.0.
[source]: Remove bundled libffi.
[arguments]: Use parallel tests.
(ruby-2.2): New variable.
2016-01-11 21:59:06 +10:00
Ben Woodcroft 9656b8bec5 gnu: ruby: Use modify-phases.
* gnu/packages/ruby.scm (ruby)[arguments]: Use modify-phases.
2016-01-11 21:59:06 +10:00
Ben Woodcroft 761e7042f6 ruby: Abstract out path to GEM_HOME.
Previously paths to the GEM_HOME of certain Ruby packages were
hard-coded, so packages failed to build when Ruby was updated to 2.3.0.

* guix/build/ruby-build-system.scm (gem-home): New procedure.
* gnu/packages/ruby.scm (ruby-metaclass, ruby-instantiator,
ruby-introspection, ruby-mocha, ruby-minitest-tu-shim): Use it.
2016-01-11 21:58:55 +10:00
Efraim Flashner ec70fec559 gnu: youtube-dl: Update to 2016.01.09.
* gnu/packages/video.scm (youtube-dl): Update to 2016.01.09.
2016-01-11 13:30:50 +02:00
Andreas Enge 4879d2ff66 gnu: gp2c: Update to 0.0.9pl5.
* gnu/packages/algebra.scm (gp2c): Update to 0.0.9pl5.
2016-01-11 11:24:52 +01:00
Andreas Enge 4a6635f353 gnu: texlive: Use modify-phases syntax.
* gnu/packages/texlive.scm (texlive-bin, texlive-texmf): Use modify-phases
  syntax.
2016-01-11 10:59:29 +01:00
Efraim Flashner a916c82649 gnu: man-pages: Update to 4.04.
* gnu/packages/man.scm (man-pages): Update to 4.04.
[source]: Add alternate location.
2016-01-11 09:37:50 +02:00
Ben Woodcroft 9b9b7ffd8e gnu: bedtools: Update to 2.25.0.
* gnu/packages/bioinformatics.scm (bedtools): Update to 0.25.0.
[source]: Remove patch merged upstream.
[arguments]: Use 'modify-phases'.  Remove
'patch-makefile-SHELL-definition' phase.
* gnu/packages/patches/bedtools-32bit-compilation.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
2016-01-11 00:36:13 +10:00
Ben Woodcroft 6573ac82ad gnu: bedtools: Use modify-phases.
* gnu/packages/bioinformatics.scm (bedtools)[arguments]: Use modify-phases.
2016-01-11 00:36:13 +10:00
Ben Woodcroft 048036aee5 gnu: ruby-yard: Disable failing test.
* gnu/packages/ruby.scm (ruby-yard)[arguments]: Disable test which fails on
Ruby 2.3.0.
2016-01-10 21:10:29 +10:00
Ben Woodcroft 3918146b61 gnu: ruby-power-assert: Update to 0.2.7.
* gnu/packages/ruby.scm (ruby-power-assert): Update to 0.2.7.
2016-01-10 21:09:37 +10:00
Andreas Enge 695bea9803 gnu: r: Update to 3.2.3.
* gnu/packages/statistics.scm (r): Update to 3.2.3.
2016-01-09 23:18:28 +01:00
Andreas Enge 13035f5a03 gnu: icecat: Update to 38.5.2-gnu1.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.5.2-gnu1.
2016-01-09 22:51:28 +01:00
Ben Woodcroft 4c40fa0229 gnu: ruby-2.1: Update to 2.1.8.
* gnu/packages/ruby.scm (ruby-2.1): Update to 2.1.8.
2016-01-09 14:53:58 +10:00
Leo Famulari f32274a71e gnu: i2c-tools: Update source and home-page URLs.
* gnu/packages/linux.scm (i2c-tools)[source]: Update URL.
[home-page]: Update URL.
2016-01-08 16:42:27 -05:00
Leo Famulari 3a04d5d4e4 gnu: lm-sensors: Update source and home-page URLs.
* gnu/packages/linux.scm (lm-sensors)[source]: Update URL.
[home-page]: Update URL.
2016-01-08 16:42:27 -05:00
Mark H Weaver bea25ae83c gnu: nss: Update to 3.21 [fixes CVE-2015-7575].
* gnu/packages/gnuzilla.scm (nss): Update to 3.21.
  [arguments]: In configure phase, setenv CC=gcc.
* gnu/packages/patches/nss-pkgconfig.patch: Adapt to NSS 3.21.
2016-01-08 15:29:50 -05:00
Ludovic Courtès 195f557ed5 gnu: attr: Update to 2.4.47.
* gnu/packages/attr.scm (attr): Update to 2.4.47.
2016-01-08 16:45:32 +01:00
Ludovic Courtès 20c620d0a4 gnu: attr: Use 'modify-phases'.
* gnu/packages/attr.scm (attr)[arguments]: Use 'modify-phases'.
2016-01-08 16:45:28 +01:00
Mathieu Lirzin 2409f37f28 gnu: Add missing (gnu packages gcc) import.
* gnu/packages/bioinformatics.scm: Use (gnu packages gcc). This is
required by 'r-impute' for 'gfortran'.
2016-01-08 14:18:46 +01:00
Mathieu Lirzin 9ef824c10e gnu: xterm: Update to 322.
* gnu/packages/xorg.scm (xterm): Update to 322.
2016-01-08 14:12:29 +01:00
宋文武 a65e26f091 gnu: epiphany: Update to 3.18.2.
* gnu/packages/gnome.scm (epiphany): Update to 3.18.2.
2016-01-08 17:34:08 +08:00
宋文武 19e5258d84 gnu: webkitgtk: Update to 2.10.4.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.10.4.
2016-01-08 17:34:08 +08:00
Efraim Flashner 209e09fa10 gnu: zlib: Update to 1.2.8.
* gnu/packages/compression.scm (zlib): Update to 1.2.8.
2016-01-08 06:39:12 +02:00
Pjotr Prins c8d969b58f gnu: Add Pfff.
* gnu/packages/textutils.scm (pfff): New variable.
2016-01-07 21:13:35 +01:00
Alex Kost fbbaa4dde8 gnu: mpv: Remove 'samba' input.
This is a heavy-weight and uncommon feature.  See
<http://lists.gnu.org/archive/html/guix-devel/2015-12/msg00701.html>.

* gnu/packages/video.scm (mpv)[inputs]: Remove 'samba'.
2016-01-07 22:30:18 +03:00
Ricardo Wurmus cb933df6da gnu: Add genomation.
* gnu/packages/bioinformatics.scm (r-genomation): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus 03ea5a357e gnu: Add seqPattern.
* gnu/packages/bioinformatics.scm (r-seqpattern): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus c43a011de3 gnu: Add impute.
* gnu/packages/bioinformatics.scm (r-impute): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus c63cef6699 gnu: Add BSgenome.
* gnu/packages/bioinformatics.scm (r-bsgenome): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus fbf6045e33 gnu: Add plotly.
* gnu/packages/statistics.scm (r-plotly): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus a28d646b63 gnu: Add viridis.
* gnu/packages/statistics.scm (r-viridis): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus d547ce5e70 gnu: Add topGO.
* gnu/packages/bioinformatics.scm (r-topgo): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus e05c37da4a gnu: Add matrixStats.
* gnu/packages/statistics.scm (r-matrixstats): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus 3703ffb41f gnu: Add R.rsp.
* gnu/packages/statistics.scm (r-r-rsp): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus a63efbb453 gnu: Add R.cache.
* gnu/packages/statistics.scm (r-r-cache): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus 9c94b53b5b gnu: Add R.utils.
* gnu/packages/statistics.scm (r-r-utils): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus c8c75a8d88 gnu: Add R.oo.
* gnu/packages/statistics.scm (r-r-oo): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus 8bfe007c9c gnu: Add R.methodsS3.
* gnu/packages/statistics.scm (r-r-methodss3): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus a69a593595 gnu: Add base64enc.
* gnu/packages/statistics.scm (r-base64enc): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus a8227e4ae9 gnu: Add DT.
* gnu/packages/statistics.scm (r-dt): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus d706257b5b gnu: Add SparseM.
* gnu/packages/statistics.scm (r-sparsem): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus fb25d8803f gnu: Add GO.db.
* gnu/packages/bioinformatics.scm (r-go-db): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus 2fd7c04984 gnu: Add GenomicFeatures.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus 317755ff0f gnu: Add rtracklayer.
* gnu/packages/bioinformatics.scm (r-rtracklayer): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus d8a828af78 gnu: Add GenomicAlignments.
* gnu/packages/bioinformatics.scm (r-genomicalignments): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus 6e76dda2d0 gnu: Add SummarizedExperiment.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus f8d74f7018 gnu: Add Rsamtools.
* gnu/packages/bioinformatics.scm (r-rsamtools): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus bf15935337 gnu: Add Biostrings.
* gnu/packages/bioinformatics.scm (r-biostrings): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus e91d362e48 gnu: Add BiocParallel.
* gnu/packages/bioinformatics.scm (r-biocparallel): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus c465fa72ed gnu: Add biomaRt.
* gnu/packages/bioinformatics.scm (r-biomart): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus 8b7bce740d gnu: Add AnnotationDbi.
* gnu/packages/bioinformatics.scm (r-annotationdbi): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus 555e3399dc gnu: Add Biobase.
* gnu/packages/bioinformatics.scm (r-biobase): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus bc899123e7 gnu: Add snow.
* gnu/packages/statistics.scm (r-snow): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus 6b82f56cf9 gnu: Add futile.logger.
* gnu/packages/statistics.scm (r-futile-logger): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus b9ff33b50e gnu: Add futile.options.
* gnu/packages/statistics.scm (r-futile-options): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus ca65d387fd gnu: Add lambda.r.
* gnu/packages/statistics.scm (r-lambda-r): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus 543ded3619 gnu: Add r-xml.
* gnu/packages/statistics.scm (r-xml): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus cefaa79c9e gnu: Add RCurl.
* gnu/packages/statistics.scm (r-rcurl): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus 21e4d6a9cf gnu: Add RSQLite.
* gnu/packages/statistics.scm (r-rsqlite): New variable.
2016-01-07 17:18:15 +01:00
Raimon Grau fe9451c50a gnu: Add xmlstarlet.
* gnu/packages/xml.scm (xmlstarlet): New variable.
2016-01-07 16:00:00 +01:00
宋文武 29e255ca83 gnu: zita-convolver: Drop the '-march=native' optimization.
* gnu/packages/audio.scm (zita-convolver)[source]: Add snippet.
2016-01-07 22:47:32 +08:00
宋文武 6dff495580 gnu: zita-resampler: Drop the '-march=native' optimization.
* gnu/packages/audio.scm (zita-resampler)[source]: Add snippet.
2016-01-07 22:47:32 +08:00
Ben Woodcroft 7d3a1a2dd2 gnu: Add ruby-ansi.
* gnu/packages/ruby.scm (ruby-ansi): New variable.
2016-01-07 15:36:05 +01:00
Efraim Flashner b24765139c gnu: sqlite: Update to 3.10.0.
* gnu/packages/databases.scm (sqlite): Update to 3.10.0.
2016-01-07 12:37:37 +02:00
Ricardo Wurmus 5dfd276602 gnu: edirect: Update to 3.50.
* gnu/packages/bioinformatics.scm (edirect): Update to 3.50.
[native-inputs]: Remove "unzip".
2016-01-07 11:25:24 +01:00
Leo Famulari 62339e2d49 gnu: w3m: Enable SSL, disable broken protocols and ciphers.
Fixes <http://bugs.gnu.org/16791>.

* gnu/packages/patches/w3m-force-ssl_verify_server-on.patch: New file.
* gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch: New file.
* gnu/packages/patches/w3m-disable-weak-ciphers.patch: New file.
* gnu/packages/w3m.scm (w3m)[source]: Add patches.
* gnu-system.am (dist_patch_DATA): Add the new files.
2016-01-07 02:35:38 -05:00
Leo Famulari e6352001c4 gnu: w3m: Update patch to use '-p1'.
* gnu/packages/patches/w3m-fix-compile.patch: Rename this file...
* gnu/packages/patches/w3m-libgc.patch: ...to this, and adjust patch
prefix level to '-p1'.
* gnu-system.am (dist_patch_DATA): Update patch name.
* gnu/packages/w3m.scm (w3m)[source]: Update patch name.
[source]: Drop patch flag -p0.
2016-01-07 02:35:38 -05:00
Efraim Flashner 93b3a8b0ee gnu: flex: Update to 2.6.0.
* gnu/packages/flex.scm (flex): Update to 2.6.0.
[source]: Remove flex-bison-tests.patch.
* gnu-system.am (dist_patch_DATA): Remove flex-bison-tests.patch.
* gnu/packages/patches/flex-bison-tests.patch: Remove it.
2016-01-07 08:42:15 +02:00
Ludovic Courtès d4aaf95401 build-system/gnu: Make 'package-with-explicit-inputs' idempotent.
* guix/build-system/gnu.scm (package-with-explicit-inputs): Use
  'ensure-keyword-arguments' instead of appending to ARGS.
* gnu/packages/commencement.scm (static-bash-for-glibc): Add missing
  #:guile argument.
2016-01-06 23:08:22 +01:00
Ludovic Courtès dff9141c5e gnu: guix: Update development snapshot to f888c0b.
* gnu/packages/package-management.scm (guix-devel): Update to f888c0b.
2016-01-06 23:08:22 +01:00
Efraim Flashner bfcb7bcb73 gnu: libffi: Update to 3.2.1.
* gnu/packages/libffi.scm (libffi): Update to 3.2.1.
2016-01-06 20:28:57 +02:00
Eric Bavier c7b08410de gnu: gmsh: Update to 2.11.0.
* gnu/packages/maths.scm (gmsh): Update to 2.11.0.
  [arguments]: Replace 'check phase.
2016-01-06 10:49:23 -06:00
Ludovic Courtès 7b78f359d1 gnu: sudo: Use /var/run/sudo instead of /run/sudo.
* gnu/packages/admin.scm (sudo)[arguments]: Pass
--with-rundir=/var/run/sudo since /var/run is cleaned up at boot time on
GuixSD whereas /run is not.
2016-01-06 15:51:31 +01:00
Ludovic Courtès 3c4c8c3e06 services: cleanup-service: Catch 'system-error' instead of everything.
This makes sure that critical errors such as unbound-variable do not go
undetected.

* gnu/services.scm (cleanup-gexp): Introduce local 'fail-safe' macro and
use it.  Remove uses of 'false-if-exception'.
2016-01-06 14:49:48 +01:00
Ludovic Courtès 341ae58213 gnu: ldc: Fix license.
* gnu/packages/ldc.scm (ldc)[license]: Replace invalid use of
'license:x11-style' by LICENSE:BOOST1.0.
2016-01-06 14:21:53 +01:00
Ricardo Wurmus a243e12aba gnu: icedtea7: Rename to icedtea-7.
* gnu/packages/java.scm (icedtea7): Rename variable to...
(icedtea-7): ...this.
(icedtea): Refer to "icedtea-7".
2016-01-06 11:38:50 +01:00
Ricardo Wurmus d028740622 gnu: icedtea6: Rename to icedtea-6.
* gnu/packages/java.scm (icedtea6): Rename variable to...
(icedtea-6): ...this.
2016-01-06 11:38:50 +01:00
Ricardo Wurmus 5452588c1a gnu: icedtea6, icedtea7: Rename package to "icedtea".
* gnu/packages/java.scm (icedtea6): Change package name to "icedtea".
(icedtea7): Inherit package name.
2016-01-06 11:38:50 +01:00
Ricardo Wurmus d2540f80c2 gnu: Add and use default IcedTea.
* gnu/packages/java.scm (icedtea): New variable.
(swt)[native-inputs]: Replace "icedtea6" with "icedtea".
* gnu/packages/bioinformatics.scm (htsjdk)[native-inputs]: Likewise.
(ngs-java)[inputs]: Likewise.
* gnu/packages/kodi.scm (kodi)[native-inputs]: Replace "icedtea7" with
"icedtea".
* gnu/packages/ruby.scm (ruby-rjb)[native-inputs]: Replace "icedtea7"
with "icedtea".
2016-01-06 11:38:50 +01:00
Ricardo Wurmus d91488908b gnu: icedtea6, icedtea7: Unpack to "openjdk.src".
* gnu/packages/java.scm (icedtea6)[arguments]: Unpack OpenJDK sources to
"openjdk.src".
(icedtea7)[arguments]: Inherit "--with-openjdk-src-dir" flag; refer to
"openjdk.src" in build phases; simplify "unpack" phase.
[native-inputs]: Rename "openjdk-drop" to "openjdk-src".
2016-01-06 11:38:50 +01:00
Ricardo Wurmus 43c565d2e7 gnu: Add Jellyfish.
* gnu/packages/bioinformatics.scm (jellyfish): New variable.
2016-01-06 11:10:46 +01:00
Andreas Enge 7d1f8d4f52 gnu: calibre: Update to 2.48.0.
* gnu/packages/ebook.scm (calibre): Update to 2.48.0.
2016-01-05 22:46:54 +01:00
Efraim Flashner e5f037624e gnu: gettext: Use "modify-phases" syntax.
* gnu/packages/gettext.scm (gettext)[arguments]: Use "modify-phases" syntax.
2016-01-05 21:13:57 +02:00
Efraim Flashner d99861d39d gnu: gettext: Update to 0.19.7.
* gnu/packages/gettext.scm (gettext): Update to 0.19.7.
2016-01-05 21:06:59 +02:00
Efraim Flashner 5a75865f9d gnu: gnutls: Update to 3.4.7.
* gnu/packages/tls.scm (gnutls): Update to 3.4.7.
[source]: Remove gnutls-doc-fix.patch.
[arguments]: Remove delete-prebuilt-unfixed-info-file phase.
[native-inputs]: Remove texinfo.
* gnu-system.am (dist_patch_DATA): Remove gnutls-doc-fix.patch
2016-01-05 21:06:59 +02:00
Efraim Flashner 3ea110b704 gnu: libtasn1: Update to 4.7.
* gnu/packages/tls.scm (libtan1): Update to 4.7.
[native-inputs]: Remove texinfo.
2016-01-05 21:06:59 +02:00
Roel Janssen a7ec569c98 gnu: Add LDC.
* gnu/packages/ldc.scm: New file.
* gnu/packages/patches/ldc-disable-tests.patch: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add ldc.scm.
  (dist_patch_DATA): Add patch file.
2016-01-05 16:24:57 +01:00
Ludovic Courtès e8e2e18b84 gnu: Read 'C_INCLUDE_PATH' instead of 'CPATH'.
This is a followup to 009b53fd.

* gnu/packages/cmake.scm (cmake)[arguments]: Use (getenv
"C_INCLUDE_PATH") instead of (getenv "CPATH").
* gnu/packages/package-management.scm (rpm)[arguments]: Likewise.
* gnu/packages/video.scm (avidemux)[arguments]: Likewise.
* gnu/packages/webkit.scm (webkitgtk)[arguments]: Likewise.
* gnu/packages/cross-base.scm (cross-gcc-arguments): Likewise, and unset
'C_INCLUDE_PATH' and 'CPLUS_INCLUDE_PATH'.
2016-01-05 14:11:54 +01:00
Ludovic Courtès a2ab82db9a gnu: python: Honor 'C_INCLUDE_PATH'.
This is a followup to 009b53fd.

* gnu/packages/patches/python-3-search-paths.patch: Check
'C_INCLUDE_PATH' instead of 'CPATH'.
* gnu/packages/patches/python-2.7-search-paths.patch: Likewise.
2016-01-05 13:13:17 +01:00
Dmitry Bogatov 1075b43737 gnu: Add emacs-undo-tree.
* gnu/packages/emacs.scm (emacs-undo-tree): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-01-05 00:28:42 +01:00
Ludovic Courtès fe542b9762 gnu: emacs: Remove 'info.info'.
* gnu/packages/emacs.scm (emacs)[arguments]: Use 'modify-phases'.  Add
'remove-info.info' phase.
2016-01-05 00:28:42 +01:00
Ludovic Courtès fb74174958 linux-boot: Remove verbose output for module loads.
* gnu/build/linux-boot.scm (boot-system): Leave
'current-module-debugging-port' unchanged.
* gnu/build/linux-modules.scm (load-linux-module*): Update comment about
'mmap'.
2016-01-05 00:28:42 +01:00
Ludovic Courtès be7be9e8dd services: Move /tmp cleanup to a separate service.
* gnu/services.scm (compute-boot-script): Remove /tmp and /var/run
deletion code from here.
(cleanup-gexp): New procedure with /tmp and /var/run deletion code
formerly in 'compute-boot-script'.
(cleanup-service-type): New variable.
* gnu/system.scm (essential-services): Add an instance of
CLEANUP-SERVICE-TYPE.
2016-01-05 00:28:42 +01:00
Ludovic Courtès 94af9daa73 services: boot: Reinstate /tmp and /var/run deletion.
For some time /tmp and /var/run were not being deleted because
'delete-file-recursively' was unbound.

* gnu/services.scm (compute-boot-script)[%modules, modules, compiled]:
New variables.  Use them to augment the module search path.
2016-01-05 00:28:42 +01:00
Ricardo Wurmus 4828ff91ff gnu: gtk+: Add patch to support GUIX_GTK3_PATH.
* gnu/packages/patches/gtk3-respect-GUIX_GTK3_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK3_PATH.
2016-01-04 16:11:10 -05:00
Ricardo Wurmus 2a6afac905 gnu: gtk+-2: Add patch to support GUIX_GTK2_PATH.
* gnu/packages/patches/gtk2-respect-GUIX_GTK2_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+-2) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK2_PATH.
2016-01-04 16:11:10 -05:00
Efraim Flashner 4f2ca23493 gnu: libgcrypt: Update to 1.6.4.
* gnu/packages/gnupg.scm (libgcrypt): Update to 1.6.4.
2016-01-04 22:29:08 +02:00
Manolis Ragkousis 4478dbd58c gnu: libgpg-error: Update to 1.21.
* gnu/packages/gnupg.scm (libgpg-error): Update to 1.21.
2016-01-04 18:23:29 +02:00
Efraim Flashner 82cb8519bc gnu: tzdata: Update to 2015g.
* gnu/packages/base.scm (tzdata): Update to 2015g.
2016-01-04 16:59:13 +02:00
Ricardo Wurmus c2e87caaa6 gnu: julia: Update to 0.4.2.
* gnu/packages/patches/julia-0.3.10-fix-empty-array.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/julia.scm (julia): Update to 0.4.2.
[arguments]: Remove phase "fix-building-with-mcjit-llvm"; replace phase
"patch-include-path" with "fix-include-and-link-paths"; add phase
"hardcode-paths"; add missing make-flags.
[inputs]: Replace "pcre" with "pcre2"; replace "git" with "libgit2"; add
"coreutils"; add "libuv-julia"; add "wget"; add "which".
[native-inputs]: Remove "which".
2016-01-04 11:35:57 +01:00
Ricardo Wurmus 50b40d0709 gnu: Add libuv-julia.
* gnu/packages/julia.scm (libuv-julia): New variable.
2016-01-04 11:35:57 +01:00
Ricardo Wurmus f1e3a8aed2 gnu: utf8proc: Update to 1.3.1.
* gnu/packages/textutils.scm (utf8proc): Update to 1.3.1.
[arguments]: Remove custom "install" phase.
2016-01-04 11:35:57 +01:00
Leo Famulari 77553dff86 gnu: samba: Update to 4.3.3.
Fixes CVE-2015-{3223,5252,5299,5296,8467,5330}.

* gnu/packages/samba.scm (samba): Update to 4.3.3.
2016-01-03 14:59:49 -05:00
Leo Famulari f6cddbefcc gnu: ldb: Update to 1.1.24.
Required for samba-4.3.3 in order to fix CVE-2015-5330 and
CVE-2015-3223.

* gnu/packages/samba.scm (ldb): Update to 1.2.24.
2016-01-03 14:59:49 -05:00
Ludovic Courtès 53334dd6e9 Merge branch 'master' into core-updates 2016-01-03 14:53:03 +01:00
Ludovic Courtès 1575dcd134 gnu: grep: Skip timing-sensitive test.
This avoids failures on loaded machines as seen
at <http://hydra.gnu.org/build/906900/log/raw>.

* gnu/packages/patches/grep-timing-sensitive-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (grep): Use it.
2016-01-03 14:50:29 +01:00
Ludovic Courtès dd1937d75d gnu: pkg-config: Update to 0.29.
* gnu/packages/pkg-config.scm (%pkg-config): Update to 0.29.
2016-01-03 14:44:22 +01:00
Eric Bavier 8d0801ab23 gnu: libgc: Enable C++ support.
* gnu/packages/bdw-gc.scm (libgc-7.2, libgc)[arguments]: Add
  --enable-cplusplus to #:configure-flags.
2016-01-02 16:06:11 -06:00
Eric Bavier 209778717a gnu: Add Asymptote.
* gnu/packages/bdw-gc.scm (libgc-for-c++): New variable.
* gnu/packages/plotutils.scm (asymptote): New variable.
* gnu/packages/patches/asymptote-gsl2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
2016-01-02 16:04:55 -06:00
Erik Edrosa b989390889 gnu: Add python-markdown.
* gnu/packages/python.scm (python-markdown, python2-markdown): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-01-02 00:07:29 -05:00
宋文武 05d48c5243 gnu: love: Update to 0.10.0.
* gnu/packages/game-development.scm (love): Update to 0.10.0.
2016-01-02 10:31:53 +08:00
Ludovic Courtès 319007c507 gnu: guile-ssh: Update to 0.9.0.
* gnu/packages/ssh.scm (guile-ssh): Update to 0.9.0.
2016-01-01 22:59:20 +01:00
Ludovic Courtès f453f637d5 system: Allow the root file system to be named by UUID.
* gnu/build/file-systems.scm (canonicalize-device-spec)[canonical-title]:
Use 'string->uuid' to check whether SPEC is a UUID.
When SPEC is a string and CANONICAL-TITLE is 'uuid, call 'string->uuid'.
* gnu/system.scm (operating-system-grub.cfg): Add 'root-device'
variable and use it for the "--root=" argument.
2016-01-01 22:50:26 +01:00
Ludovic Courtès f8865db6a0 file-systems: Move 'string->uuid' to the build side.
* gnu/system/file-systems.scm (%uuid-rx, string->uuid): Move to...
* gnu/build/file-systems.scm (%uuid-rx, string->uuid): ... here.  New
variables.
2016-01-01 22:41:35 +01:00
Ludovic Courtès 29824d80ec system: Allow the root file system to have a UUID.
This is a followup to ab64483.

* gnu/system.scm (mapped-device-user): Check whether the title of FS is
'device before calling 'string=?'.
* gnu/system/vm.scm (virtualized-operating-system)[user-file-systems]:
Likewise.
2016-01-01 22:34:13 +01:00
Ludovic Courtès e80d2555f5 gnu: findutils: Update to 4.6.0.
* gnu/packages/patches/findutils-absolute-paths.patch: Remove.
* gnu/packages/patches/findutils-test-xargs.patch: New file.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/base.scm (findutils): Update to 4.6.0.  Remove
'findutils-absolute-paths.patch' and add 'findutils-test-xargs.patch'.
2016-01-01 01:05:06 +01:00
Fabian Harfert 45147b0caa gnu: Add xaos.
* gnu/packages/maths.scm (xaos): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
2015-12-31 11:29:43 +03:00
Leo Famulari 658212ebf7 gnu: Move cursynth to (gnu packages music).
* gnu/packages/cursynth.scm: Remove.
* gnu/packages/music.scm (cursynth): New variable, from cursynth.scm.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove cursynth.scm.
2015-12-30 21:26:05 -05:00
Leo Famulari 2ef8bbc3ae gnu: libcue: Update source URL.
* gnu/packages/cdrom.scm (libcue)[source]: Update URL.
2015-12-30 19:59:58 -05:00
Efraim Flashner 34da7af4c1 gnu: python-mox3: Update to 0.13.0.
* gnu/packages/openstack.scm (python-mox3): Update to 0.13.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner 13fcc6df37 gnu: python-fixtures: Update to 1.4.0.
* gnu/packages/python.scm (python-fixtures): Update to 1.4.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner af1ab77312 gnu: python-pyld: Update to 0.6.8.
* gnu/packages/python.scm (python-pyld): Update to 0.6.8.
2015-12-30 23:16:09 +02:00
Efraim Flashner 1780424035 gnu: python-virtualenv: Update to 13.1.2.
* gnu/packages/python.scm (python-virtualenv): Update to 13.1.2.
[arguments]: Custom test command.
[inputs]: Remove python-nose, add python-pytest.
2015-12-30 23:16:09 +02:00
Efraim Flashner ec89a25cad gnu: python-oslosphinx: Update to 4.2.0.
* gnu/packages/openstack.scm (python-oslosphinx): Update to 4.2.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner f66bb273de gnu: python-oslo.serialization: Update to 2.2.0.
* gnu/packages/openstack.scm (python-oslo.serialization): Update to 2.2.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner 4768988887 gnu: python-os-testr: Update to 0.5.0.
* gnu/packages/openstack.scm (python-os-testr): Update to 0.5.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner 45f4c28d80 gnu: python-stevedore: Update to 1.10.0.
* gnu/packages/openstack.scm (python-stevedore): Update to 1.10.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner 622d21bba9 gnu: python-tempest-lib: Update to 0.12.0.
* gnu/packages/openstack.scm (python-tempest-lib): Update to 0.12.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner 690e8c6637 gnu: python-passlib: Update to 1.6.5.
* gnu/packages/python.scm (python-passlib): Update to 1.6.5.
2015-12-30 23:16:09 +02:00
Efraim Flashner 03fd001cef gnu: python-libarchive-c: Update to 2.2.
* gnu/packages/python.scm (python-libarchive-c): Update to 2.2.
2015-12-30 23:16:09 +02:00
Efraim Flashner 99b00dc796 gnu: python-tlsh: Update to 3.4.4.
* gnu/packages/python.scm (python-tlsh): Update to 3.4.4.
2015-12-30 23:16:09 +02:00
Efraim Flashner b8834c219e gnu: python-webob: Update to 1.5.1.
* gnu/packages/python.scm (python-webob): Update to 1.5.1.
2015-12-30 23:16:09 +02:00
Efraim Flashner 1b99553317 gnu: python-flake8: Update to 2.5.1.
* gnu/packages/python.scm (python-flake8): Update to 2.5.1.
2015-12-30 23:16:09 +02:00
Efraim Flashner 2abc397225 gnu: python-pyflakes: Update to 1.0.0.
* gnu/packages/python.scm (python-pyflakes): Update to 1.0.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner 3655ee76a6 gnu: python-pyzmq: Update to 15.1.0.
* gnu/packages/python.scm (python-pyzmq): Update to 15.1.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner f56777be0a gnu: python-psutil: Update to 3.3.0.
* gnu/packages/python.scm (python-psutil): Update to 3.3.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner 38eb6919e1 gnu: python-pycparser: Update to 2.14.
* gnu/packages/python.scm (python-pycparser): Update to 2.14.
2015-12-30 23:16:09 +02:00
Efraim Flashner d9aa097b96 gnu: python-pyrfc3339: Update to 1.0.
* gnu/packages/python.scm (python-pyrfc3339): Update to 1.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner f7cb984133 gnu: python-nose: Update to 1.3.7.
* gnu/packages/python.scm (python-nose): Update to 1.3.7.
2015-12-30 23:16:09 +02:00
Efraim Flashner ec3bcbc7e4 gnu: python-rpy2: Update to 2.7.6.
* gnu/packages/python.scm (python-rpy2): Update to 2.7.6.
2015-12-30 23:16:09 +02:00
Efraim Flashner 11f97c27bc gnu: pelican: Update to 3.6.3.
* gnu/packages/python.scm (pelican): Update to 3.6.3.
2015-12-30 23:16:09 +02:00
Efraim Flashner e98149b3a4 gnu: python-jinja2: Update to 2.8.
* gnu/packages/python.scm (python-jinja2): Update to 2.8.
2015-12-30 23:16:09 +02:00
Efraim Flashner 8925d4f345 gnu: python-unidecode: Update to 0.04.18.
* gnu/packages/python.scm (python-unidecode): Update to 0.04.18.
2015-12-30 23:16:09 +02:00
Efraim Flashner 7fb9ff4dea gnu: python-blinker: Update to 1.4.
* gnu/packages/python.scm (python-blinker): Update to 1.4.
2015-12-30 23:16:09 +02:00
Efraim Flashner c2a9c1c0bc gnu: python-dateutil: Update to 2.4.2.
* gnu/packages/python.scm (python-dateutil): Update to 2.4.2.
2015-12-30 23:16:09 +02:00
Efraim Flashner 2c3d13fe1b gnu: isync: Update to 1.2.1.
* gnu/packages/mail.scm (isync): Update to 1.2.1.
2015-12-30 23:16:09 +02:00
Efraim Flashner aadf46253a gnu: getmail: Update to 4.48.0.
* gnu/packages/mail.scm (getmail): Update to 4.48.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner 866fade9e5 gnu: notmuch: Update to 0.21.
* gnu/packages/mail.scm (notmuch): Update to 0.21.
2015-12-30 23:16:09 +02:00
Efraim Flashner 70e9d258c4 gnu: youtube-dl: Update to 2015.12.29.
* gnu/packages/video.scm (youtube-dl): Update to 2015.12.29.
2015-12-30 23:16:09 +02:00
Efraim Flashner 31e98ca63f gnu: offlineimap: Update to 6.6.1.
* gnu/packages/mail.scm (offlineimap): Update to 6.6.1.
2015-12-30 23:16:09 +02:00
Ricardo Wurmus 3d5fd24090 gnu: Add Fritzing.
* gnu/packages/engineering.scm (fritzing): New variable.
2015-12-30 20:41:33 +01:00
Ludovic Courtès 0084aaf3d4 gnu: Add lcov.
* gnu/packages/code.scm (lcov): New variable.
2015-12-30 19:14:04 +01:00
Alex Vong 0c1910ed03 gnu: ladspa: Update URLs.
* gnu/packages/audio.scm (ladspa): Update source and home page url.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2015-12-30 18:18:38 +01:00
Andreas Enge f95dad899b gnu: texlive: Patch texmfcnf.lua.
* gnu/packages/texlive.scm (texlive): Patch texmfcnf.lua to point to the
  absolute texlive-texmf tree.
2015-12-30 11:24:26 +01:00
Mark H Weaver 826244f01a gnu: fuse: Fix source URI.
This is a followup to commit b7e7d1b9d3.

* gnu/packages/linux.scm (fuse)[source]: Fix source URI.
2015-12-29 22:25:02 -05:00
Ben Woodcroft 19f4554c94 gnu: Add fraggenescan.
* gnu/packages/bioinformatics.scm (fraggenescan): New variable.
2015-12-29 20:14:03 -05:00
Leo Famulari 6819a8ddd6 gnu: Add shntool.
* gnu/packages/audio.scm (shntool): New variable.
2015-12-29 19:55:21 -05:00
Leo Famulari 6da16993eb gnu: Add cuetools.
* gnu/packages/audio.scm (cuetools): New variable.
2015-12-29 19:55:21 -05:00
Efraim Flashner 11afbbc651 gnu: enlightenment: Update to 0.20.2.
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.20.2.
2015-12-29 22:52:20 +02:00
Leo Famulari 6959a13271 gnu: sshfs-fuse: Update source URL.
* gnu/packages/linux.scm (sshfs-fuse)[source]: Update URL.
2015-12-29 14:20:55 -05:00
Leo Famulari b7e7d1b9d3 gnu: fuse: Update to 2.9.4.
* gnu/packages/patches/fuse-CVE-2015-3202.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (fuse): Update to 2.9.4.
  [source]: Remove patch.
2015-12-29 14:20:55 -05:00
Efraim Flashner c7d0bf0071 gnu: youtube-dl: Update to 2015.12.23.
* gnu/packages/video.scm (youtube-dl): Update to 2015.12.23.
2015-12-29 09:33:10 +02:00
Ricardo Wurmus 6da2e99e2e gnu: tuxguitar: Set missing GCJFLAGS.
* gnu/packages/music.scm (tuxguitar)[arguments]: Set compiler flags
  "-fsource=1.4" and "-fPIC".
2015-12-29 07:52:19 +01:00
Ricardo Wurmus 5f1c949866 gnu: tuxguitar: Use "modify-phases" syntax.
* gnu/packages/music.scm (tuxguitar)[arguments]: Use "modify-phases"
  syntax.
2015-12-29 07:52:19 +01:00
Leo Famulari c1ff0f2fed gnu: irssi: Update source URL.
* gnu/packages/irssi.scm (irssi)[source]: Update URL.
2015-12-27 17:39:03 -05:00
Efraim Flashner 85d42329b3 gnu: elementary: Update to 1.16.1.
* gnu/packages/enlightenment.scm (elementary): Update to 1.16.1.
2015-12-27 15:33:20 +02:00
Efraim Flashner c1a064c96e gnu: efl: Update to 1.16.1.
* gnu/packages/enlightenment.scm (efl): Update to 1.16.1.
2015-12-27 14:44:29 +02:00
Efraim Flashner e21338bec5 gnu: python-decorator: Update to 4.0.6.
* gnu/packages/python.scm (python-decorator): Update to 4.0.6.
2015-12-26 23:10:53 +02:00
Efraim Flashner 2a2d098195 gnu: python-exif-read: Update to 2.1.2.
* gnu/packages/python.scm (python-exif-read): Update to 2.1.2.
2015-12-26 23:10:53 +02:00
Efraim Flashner 82a3c582a3 gnu: python-coverage: Update to 4.0.3.
* gnu/packages/python.scm (python-coverage): Update to 4.0.3.
2015-12-26 23:10:53 +02:00
Efraim Flashner 9f44228512 gnu: python-pygments: Update to 2.0.2.
* gnu/packages/python.scm (python-pygments): Update to 2.0.2.
2015-12-26 23:10:53 +02:00
Efraim Flashner 2d3a437c79 gnu: python-cffi: Update to 1.4.2.
* gnu/packages/python.scm (python-cffi): Update to 1.4.2.
2015-12-26 23:10:53 +02:00
Efraim Flashner 71c8a804b9 gnu: python-py: Update to 1.4.31.
* gnu/packages/python.scm (python-py): Update to 1.4.31.
2015-12-26 23:10:53 +02:00
Leo Famulari b8ae816b0e gnu: tinyproxy: Update source URL.
* gnu/packages/web.scm (tinyproxy)[source]: Update URL.
2015-12-26 11:47:42 -05:00
Leo Famulari 4beb9f3a3b gnu: zsh: Add alternate source URL.
* gnu/packages/zsh.scm (zsh)[source]: Add alternate URL.
2015-12-26 11:26:57 -05:00
Leo Famulari 7b10135386 gnu: znc: Update to 1.6.2.
* gnu/packages/messaging.scm (znc): Update to 1.6.2.
2015-12-26 11:24:55 -05:00
Leo Famulari eb2371bcdd gnu: znc: Update source URL.
* gnu/packages/messaging.scm (znc)[source]: Update URL.
2015-12-26 11:24:55 -05:00
Mark H Weaver ce755b609d gnu: libpng: Update to 1.5.26 [fixes CVE-2015-8472 and CVE-2015-8540].
* gnu/packages/image.scm (libpng): Update to 1.5.26.
2015-12-26 11:01:01 -05:00
Efraim Flashner fe08b6e1eb gnu: gdk-pixbuf: Update to 2.32.3. (fixes CVE-2015-4491)
* gnu/packages/gtk.scm (gdk-pixbuf): Update to 2.32.3.
2015-12-26 11:01:01 -05:00
Efraim Flashner 4d6b8da717 gnu: cups-filters: Update to 1.4.0. (fixes CVE-2015-8560)
* gnu/packages/cups.scm (cups-filters): Update to 1.4.0.
2015-12-26 11:01:01 -05:00
Leo Famulari 75bae747cc gnu: xlockmore: Update to 5.46.
* gnu/packages/xdisorg.scm (xlockmore): Update to 5.46.
2015-12-26 02:22:20 -05:00
Leo Famulari 20c043587a gnu: xlockmore: Add alternate URL.
* gnu/packages/xdisorg.scm (xlockmore)[source]: Add alternate URL.
2015-12-26 02:17:46 -05:00
Leo Famulari d642053386 gnu: wmctrl: Update source URL.
* gnu/packages/xdisorg.scm (wmctrl)[source]: Update URL.
2015-12-26 01:55:14 -05:00
Leo Famulari 3759bfad32 gnu: colordiff: Update to 1.0.16.
* gnu/packages/patchutils.scm (colordiff): Update to 1.0.16.
2015-12-26 00:10:32 -05:00
Leo Famulari 8d479d27ca gnu: colordiff: Update source URL.
* gnu/packages/patchutils.scm (colordiff)[source]: Update URL.
2015-12-26 00:10:09 -05:00
Leo Famulari 97a79b19d1 gnu: opus-tools: Update source URL.
* gnu/packages/xiph.sch (opus-tools)[source]: Update URL.
2015-12-26 00:00:21 -05:00
Leo Famulari 5b0bcecdd1 gnu: moreutils: Update to 0.57.
* gnu/packages/moreutils.scm (moreutils): Update to 0.57.
2015-12-25 23:59:26 -05:00
Leo Famulari d4ec43392b gnu: lynx: Update source URL.
* gnu/packages/lynx.scm (lynx)[source]: Update URL.
2015-12-25 23:58:33 -05:00
Leo Famulari 4150ac88bc gnu: libsodium: Add alternate URL.
* gnu/packages/crypto.scm (libsodium)[source]: Add alternate URL.
2015-12-25 23:56:15 -05:00
Leo Famulari 8fa16f63e7 gnu: libev: Update source URL.
* gnu/packages/libevent.scm (libev)[source]: Update URL.
2015-12-25 23:51:08 -05:00
Leo Famulari 8f26f23926 gnu: hevea: Update URL.
* gnu/packages/ocaml.scm (hevea)[source]: Update URL.
2015-12-25 23:46:55 -05:00
Leo Famulari 513f8ab4f3 gnu: exim: Update to 4.86.
* gnu/packages/mail.scm (exim): Update to 4.86.
2015-12-25 23:42:17 -05:00
Leo Famulari fc6fdc05cb gnu: exim: Add alternate URL.
* gnu/packages/mail.scm (exim)[source]: Add alternate URL.
2015-12-25 23:42:17 -05:00
Leo Famulari e1921a384c gnu: eudev: Update home-page URL.
* gnu/packages/linux.scm (eudev)[home-page]: Add up-to-date URL.
2015-12-25 23:40:32 -05:00
Ricardo Wurmus 9625029401 gnu: Add Bristol.
* gnu/packages/music.scm (bristol): New variable.
2015-12-24 19:39:17 +01:00
Ricardo Wurmus 398abcf81a gnu: lilypond: Update to 2.19.33.
* gnu/packages/music.scm (lilypond): Update to 2.19.33.
2015-12-24 10:10:40 +01:00
Ricardo Wurmus 409be57b09 gnu: lilypond: Build info pages with images.
* gnu/packages/music.scm (lilypond)[arguments]: Set "conf" and "out" to
  "www"; rename phase "hardcode-path-to-gs" to "fix-path-references";
  fix reference to "/bin/sh"; add phase "install-info".
2015-12-24 10:10:40 +01:00
Ricardo Wurmus c493679f9a gnu: Add Yoshimi.
* gnu/packages/music.scm (yoshimi): New variable.
2015-12-24 10:10:40 +01:00
Ricardo Wurmus 6a91494898 gnu: Add XML::Compile::WSDL11.
* gnu/packages/xml.scm (perl-xml-compile-wsdl11): New variable.
2015-12-24 10:10:40 +01:00
Ricardo Wurmus baeab9b8b9 gnu: Add XML::Compile::SOAP.
* gnu/packages/xml.scm (perl-xml-compile-soap): New variable.
2015-12-24 10:10:40 +01:00
Ricardo Wurmus c1d41b5df3 gnu: Add XML::Compile::Cache.
* gnu/packages/xml.scm (perl-xml-compile-cache): New variable.
2015-12-24 10:10:40 +01:00
Ricardo Wurmus f7c4dc2f55 gnu: Add XML::LibXML::Simple.
* gnu/packages/xml.scm (perl-xml-libxml-simple): New variable.
2015-12-24 10:10:40 +01:00
Ricardo Wurmus 8aad646637 gnu: Add File::Slurp::Tiny.
* gnu/packages/perl.scm (perl-file-slurp-tiny): New variable.
2015-12-24 10:10:40 +01:00
Ricardo Wurmus a05996e000 gnu: Add HTML::Template.
* gnu/packages/web.scm (perl-html-template): New variable.
2015-12-24 10:10:40 +01:00
Ricardo Wurmus b494a5f1bd gnu: Add XML::Compile.
* gnu/packages/xml.scm (perl-xml-compile): New variable.
2015-12-24 10:10:40 +01:00
Ricardo Wurmus 649e1676bc gnu: Add XML::Compile::Tester.
* gnu/packages/xml.scm (perl-xml-compile-tester): New variable.
2015-12-24 10:10:40 +01:00
Ricardo Wurmus dd686c0838 gnu: Add Log::Report.
* gnu/packages/perl.scm (perl-log-report): New variable.
2015-12-24 10:10:39 +01:00
Ricardo Wurmus fc2448bf89 gnu: Add Log::Report::Optional.
* gnu/packages/perl.scm (perl-log-report-optional): New variable.
2015-12-24 10:10:39 +01:00
Ricardo Wurmus c47b85de0c gnu: Add String::Print.
* gnu/packages/perl.scm (perl-string-print): New variable.
2015-12-24 10:10:39 +01:00
Ricardo Wurmus e92468d803 gnu: Add Unicode::LineBreak.
* gnu/packages/perl.scm (perl-unicode-linebreak): New variable.
2015-12-24 10:10:39 +01:00
Ricardo Wurmus 55932aeee1 gnu: Add MIME::Charset.
* gnu/packages/perl.scm (perl-mime-charset): New variable.
2015-12-24 10:10:39 +01:00
Leo Famulari 8f1640ed8f gnu: gusb: Update home-page.
* gnu/packages/gnome.scm (gusb)[home-page]: Update home-page.
2015-12-24 02:16:57 -05:00