cde7fcedf9
gnu: r-genomeinfodb: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.26.0.
2020-12-09 12:12:38 +01:00
2ae3b7db24
gnu: r-bioccheck: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.26.0.
2020-12-09 12:12:38 +01:00
1160c83caf
gnu: r-biocstyle: Update to 2.18.0.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.18.0.
2020-12-09 12:12:38 +01:00
182a080127
gnu: r-biocviews: Update to 1.58.0.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.58.0.
2020-12-09 12:12:38 +01:00
16a4822a07
gnu: r-grohmm: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.24.0.
2020-12-09 12:12:37 +01:00
5598f53497
gnu: r-systempiper: Update to 1.24.2.
...
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.24.2.
[propagated-inputs]: Add r-iranges.
2020-12-09 12:12:37 +01:00
a05bb428e4
gnu: r-shortread: Update to 1.48.0.
...
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.48.0.
2020-12-09 12:12:37 +01:00
74204b48eb
gnu: r-gostats: Update to 2.56.0.
...
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.56.0.
2020-12-09 12:12:37 +01:00
afbc8e1433
gnu: r-category: Update to 2.56.0.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.56.0.
2020-12-09 12:12:37 +01:00
03312f052a
gnu: r-gseabase: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.52.0.
2020-12-09 12:12:37 +01:00
7a57b229b6
gnu: r-rbgl: Update to 1.66.0.
...
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.66.0.
2020-12-09 12:12:37 +01:00
4451918e3a
gnu: r-annotationforge: Update to 1.32.0.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.32.0.
2020-12-09 12:12:37 +01:00
a323c1e9b4
gnu: r-dexseq: Update to 1.36.0.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.36.0.
2020-12-09 12:12:37 +01:00
936227f144
gnu: r-deseq2: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.30.0.
2020-12-09 12:12:37 +01:00
64cf667e98
gnu: r-genefilter: Update to 1.72.0.
...
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.72.0.
2020-12-09 12:12:36 +01:00
fe4ce29a5c
gnu: r-beachmat: Update to 2.6.1.
...
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.1.
2020-12-09 12:12:36 +01:00
0022e9f4c0
gnu: r-ncdfflow: Fix r-rhdf5libs link.
...
* gnu/packages/bioconductor.scm (r-ncdfflow): [arguments]: Avoid to have a
plain directory on the list of libraries to link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:36 +01:00
2b224f904a
gnu: r-cytoml: Fix r-rhdf5libs linking.
...
* gnu/packages/bioconductor.scm (r-cytoml): [arguments]: Avoid to have
a plain directory on the list of libraries to link.
2020-12-09 12:12:36 +01:00
ece564f07d
gnu: r-flowworkspace: Fix r-rhdf5libs linking.
...
* gnu/packages/bioconductor.scm (r-flowworkspace): [arguments]: Avoid to have
a plain directory on the list of libraries to link.
2020-12-09 12:12:36 +01:00
26cf5eb568
gnu: r-hdf5array: Fix r-rhdf5libs linking.
...
* gnu/packages/bioconductor.scm (r-hdf5array): [arguments]: Avoid to have a
plain directory on the list of libraries to link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:36 +01:00
b58c4e7613
gnu: r-cytolib: Fix r-rhdf5libs linking.
...
* gnu/packages/bioconductor.scm (r-cytolib): [arguments]: Avoid to have a
plain directory on the list of libraries to link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:36 +01:00
c5ae5c1c40
gnu: r-rhdf5lib: Fix build.
...
* gnu/packages/bioconductor.scm (r-rhdf5lib)[arguments]: Fix build.
2020-12-09 12:12:36 +01:00
79cb6af375
gnu: r-rhdf5lib: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.12.0.
2020-12-09 12:12:36 +01:00
5992c25e7f
gnu: r-hdf5array: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.18.0.
2020-12-09 12:12:36 +01:00
fafa94b065
gnu: r-delayedarray: Update to 0.16.0.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.16.0.
[propagated-inputs]: Add r-matrixgenerics; remove r-matrixstats.
2020-12-09 12:12:36 +01:00
c8da013780
gnu: Add r-matrixgenerics.
...
* gnu/packages/bioconductor.scm (r-matrixgenerics): New variable.
2020-12-09 12:12:36 +01:00
47f6fd802e
gnu: Add r-ggalluvial.
...
* gnu/packages/cran.scm (r-ggalluvial): New variable.
2020-12-09 12:12:35 +01:00
cf6033ee6e
gnu: r-iranges: Update to 2.24.0.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.24.0.
2020-12-09 12:12:35 +01:00
57820475db
gnu: r-s4vectors: Update to 0.28.0.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.28.0.
2020-12-09 12:12:35 +01:00
ed44a72acf
gnu: r-hitc: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.34.0.
2020-12-09 12:12:35 +01:00
7105658e9c
gnu: r-fithic: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.16.0.
2020-12-09 12:12:35 +01:00
724b770678
gnu: r-xvector: Update to 0.30.0.
...
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.30.0.
2020-12-09 12:12:35 +01:00
b6348b0edf
gnu: r-rgraphviz: Update to 2.34.0.
...
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.34.0.
2020-12-09 12:12:35 +01:00
8fa30df02a
gnu: r-preprocesscore: Update to 1.52.0.
...
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.52.0.
2020-12-09 12:12:35 +01:00
e5b2c80dc2
gnu: r-fourcseq: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-fourcseq): Update to 1.24.0.
2020-12-09 12:12:35 +01:00
3cacc3bdce
gnu: r-icens: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-icens): Update to 1.62.0.
2020-12-09 12:12:35 +01:00
126846a0da
gnu: r-m3c: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.12.0.
2020-12-09 12:12:35 +01:00
7a242042ae
gnu: r-rgreat: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-rgreat): Update to 1.22.0.
2020-12-09 12:12:35 +01:00
15be98c136
gnu: r-biodist: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.62.0.
2020-12-09 12:12:34 +01:00
7891c83c3e
gnu: r-biocworkflowtools: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.16.0.
2020-12-09 12:12:34 +01:00
feb0cbf402
gnu: r-biocset: Update to 1.4.0.
...
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.4.0.
[propagated-inputs]: Add r-s4vectors; remove r-rtracklayer.
2020-12-09 12:12:34 +01:00
ff4834c065
gnu: Add r-biocio.
...
* gnu/packages/bioconductor.scm (r-biocio): New variable.
2020-12-09 12:12:34 +01:00
6a5d8cadee
gnu: r-biocpkgtools: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.8.0.
2020-12-09 12:12:34 +01:00
072f722f8e
gnu: r-biocor: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.14.0.
2020-12-09 12:12:34 +01:00
e29b15ee97
gnu: r-bioconcotk: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.10.0.
2020-12-09 12:12:34 +01:00
13d0b780c1
gnu: r-multiassayexperiment: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.16.0.
2020-12-09 12:12:34 +01:00
49a728581f
gnu: r-experimenthub: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.16.0.
2020-12-09 12:12:34 +01:00
abc18fc596
gnu: r-biocgraph: Update to 1.52.0.
...
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.52.0.
2020-12-09 12:12:34 +01:00
7dced9ad01
gnu: r-bioccasestudies: Update to 1.52.0.
...
* gnu/packages/bioconductor.scm (r-bioccasestudies): Update to 1.52.0.
2020-12-09 12:12:34 +01:00
b0f3bfe4ae
gnu: r-ebarrays: Update to 2.54.0.
...
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.54.0.
2020-12-09 12:12:34 +01:00
a4f4a55283
gnu: r-reactomepa: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.34.0.
2020-12-09 12:12:34 +01:00
26224e09ae
gnu: r-graphite: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.36.0.
2020-12-09 12:12:34 +01:00
95e30d8f6e
gnu: r-biobroom: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.22.0.
2020-12-09 12:12:33 +01:00
2f36b0406e
gnu: r-bioassayr: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.0.
2020-12-09 12:12:33 +01:00
95ef268142
gnu: r-chemminer: Update to 3.42.0.
...
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.0.
2020-12-09 12:12:33 +01:00
1e28867803
gnu: r-bigpint: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.6.0.
2020-12-09 12:12:33 +01:00
e80f8262f6
gnu: r-bigmemoryextras: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-bigmemoryextras): Update to 1.38.0.
2020-12-09 12:12:33 +01:00
0f94a9edb0
gnu: r-biggr: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.26.0.
2020-12-09 12:12:33 +01:00
249b703056
gnu: r-hyperdraw: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.42.0.
2020-12-09 12:12:33 +01:00
294fd58a42
gnu: r-hypergraph: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.62.0.
2020-12-09 12:12:33 +01:00
3320f044a3
gnu: r-rsbml: Update to 2.48.0.
...
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.48.0.
2020-12-09 12:12:33 +01:00
d57be63323
gnu: r-bifet: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.10.0.
2020-12-09 12:12:33 +01:00
4ec665693d
gnu: r-bicare: Update to 1.48.0.
...
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.48.0.
2020-12-09 12:12:33 +01:00
2219bef12f
gnu: r-bhc: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.42.0.
2020-12-09 12:12:33 +01:00
3cebe2745a
gnu: r-bgx: Update to 1.56.0.
...
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.56.0.
2020-12-09 12:12:33 +01:00
fad5da32dc
gnu: r-bgmix: Update to 1.50.0.
...
* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.50.0.
2020-12-09 12:12:32 +01:00
fa7e242910
gnu: r-unifiedwmwqpcr: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.26.0.
2020-12-09 12:12:32 +01:00
949626f209
gnu: r-htqpcr: Update to 1.44.0.
...
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.44.0.
2020-12-09 12:12:32 +01:00
44ecd5f77f
gnu: r-variancepartition: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.20.0.
2020-12-09 12:12:32 +01:00
45ea773f94
gnu: r-variantfiltering: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.26.0.
2020-12-09 12:12:32 +01:00
87f704b43c
gnu: r-timeseriesexperiment: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.8.0.
2020-12-09 12:12:32 +01:00
fd7e23b551
gnu: r-wavcluster: Update to 2.24.0.
...
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.24.0.
2020-12-09 12:12:32 +01:00
0c53f27dd6
gnu: r-reqon: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.36.0.
2020-12-09 12:12:32 +01:00
42e00c0923
gnu: r-seqbias: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.38.0.
2020-12-09 12:12:32 +01:00
a50779b8a3
gnu: r-gdsfmt: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.26.0.
2020-12-09 12:12:32 +01:00
e7b61ba7f6
gnu: r-roc: Update to 1.66.0.
...
* gnu/packages/bioconductor.scm (r-roc): Update to 1.66.0.
2020-12-09 12:12:31 +01:00
5d1bd61137
gnu: r-genie3: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.12.0.
2020-12-09 12:12:31 +01:00
7954fe16a0
gnu: r-cicero: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.8.0.
2020-12-09 12:12:31 +01:00
6481357330
gnu: r-rcistarget: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.10.0.
2020-12-09 12:12:31 +01:00
fafaeab48b
gnu: r-depecher: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.6.0.
2020-12-09 12:12:31 +01:00
0e78ce36f0
gnu: r-mixomics: Update to 6.14.0.
...
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.14.0.
2020-12-09 12:12:31 +01:00
1f7ddaf0fb
gnu: r-flowsom: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.22.0.
2020-12-09 12:12:31 +01:00
63033b159a
gnu: r-cytoml: Update to 2.2.1.
...
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.2.1.
2020-12-09 12:12:31 +01:00
5abf0a0dd2
gnu: r-opencyto: Update to 2.2.0.
...
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.2.0.
2020-12-09 12:12:30 +01:00
fd11c7b80f
gnu: r-flowstats: Update to 4.2.0.
...
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.2.0.
2020-12-09 12:12:30 +01:00
1b347814f8
gnu: r-flowworkspace: Update to 4.2.0.
...
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.2.0.
[inputs]: Add zlib.
[propagated-inputs]: Add r-aws-s3 and r-aws-signature. Remove r-stringr.
2020-12-09 12:12:30 +01:00
ffa42c7741
gnu: Add r-aws-s3.
...
* gnu/packages/cran.scm (r-aws-s3): New variable.
2020-12-09 12:12:30 +01:00
7f940bd093
gnu: Add r-aws-signature.
...
* gnu/packages/cran.scm (r-aws-signature): New variable.
2020-12-09 12:12:30 +01:00
5bab0b7eee
gnu: r-rprotobuflib: Update to 2.2.0.
...
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.2.0.
2020-12-09 12:12:30 +01:00
33c5b6d7ca
gnu: r-flowclust: Update to 3.28.0.
...
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.28.0.
2020-12-09 12:12:30 +01:00
d5a53ab76b
gnu: r-flowviz: Update to 1.54.0.
...
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.54.0.
2020-12-09 12:12:30 +01:00
eac1eaaa0f
gnu: r-ncdfflow: Update to 2.36.0.
...
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.36.0.
2020-12-09 12:12:30 +01:00
2cd78131cc
gnu: r-flowmeans: Update to 1.50.0.
...
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.50.0.
2020-12-09 12:12:30 +01:00
3f0e93b47b
gnu: r-flowcore: Update to 2.2.0.
...
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.2.0.
[propagated-inputs]: Add r-s4vectors.
2020-12-09 12:12:29 +01:00
c6ccd4fcb1
gnu: r-cytolib: Update to 2.2.0.
...
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.2.0.
[native-inputs]: Add pkg-config.
2020-12-09 12:12:29 +01:00
a49024e6af
gnu: r-consensusclusterplus: Update to 1.54.0.
...
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.54.0.
2020-12-09 12:12:29 +01:00
d361222d8f
gnu: r-flowutils: Update to 1.54.0.
...
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.54.0.
2020-12-09 12:12:29 +01:00
d764f1e7fe
gnu: r-rsubread: Update to 2.4.2.
...
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.4.2.
2020-12-09 12:12:29 +01:00
458aa44622
gnu: r-annotatr: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.16.0.
2020-12-09 12:12:29 +01:00
26e417063f
gnu: r-biosigner: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.18.0.
2020-12-09 12:12:29 +01:00
59daf6ed12
gnu: r-ropls: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.22.0.
2020-12-09 12:12:29 +01:00
e78e04d2ee
gnu: r-multidataset: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.18.0.
2020-12-09 12:12:29 +01:00
979b1edc52
gnu: r-birewire: Update to 3.22.0.
...
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.22.0.
2020-12-09 12:12:29 +01:00
d8a7bf768f
gnu: r-rqc: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.24.0.
2020-12-09 12:12:29 +01:00
1b4c271970
gnu: r-quasr: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.30.0.
2020-12-09 12:12:29 +01:00
c36d888f42
gnu: r-rhisat2: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.6.0.
2020-12-09 12:12:28 +01:00
ca0271c550
gnu: r-sgseq: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.24.0.
2020-12-09 12:12:28 +01:00
ea86d93e8c
gnu: r-rbowtie: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.30.0.
2020-12-09 12:12:28 +01:00
4bc0675de0
gnu: r-iclusterplus: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.26.0.
2020-12-09 12:12:28 +01:00
e65e81d285
gnu: r-biocfilecache: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.14.0.
2020-12-09 12:12:28 +01:00
0067589a9e
gnu: r-arrmnormalization: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.30.0.
2020-12-09 12:12:28 +01:00
d115db7f7d
gnu: r-progeny: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.12.0.
2020-12-09 12:12:28 +01:00
9834d1ab38
gnu: r-rbowtie2: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.12.0.
2020-12-09 12:12:28 +01:00
59fafa19f5
gnu: r-zfpkm: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.12.0.
2020-12-09 12:12:28 +01:00
d176ad34d7
gnu: r-webbioc: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.62.0.
2020-12-09 12:12:28 +01:00
ba53681a46
gnu: r-widgettools: Update to 1.68.0.
...
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.68.0.
2020-12-09 12:12:28 +01:00
397bcd2ccd
gnu: r-wiggleplotr: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.14.0.
2020-12-09 12:12:28 +01:00
dc7c6368ed
gnu: r-wrench: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.8.0.
2020-12-09 12:12:28 +01:00
a3af40eaf5
gnu: r-xcms: Update to 3.12.0.
...
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.12.0.
[propagated-inputs]: Add r-mscoreutils.
2020-12-09 12:12:27 +01:00
fa2201c108
gnu: Add r-mscoreutils.
...
* gnu/packages/bioconductor.scm (r-mscoreutils): New variable.
2020-12-09 12:12:27 +01:00
1e536c307c
gnu: Update r-msnbase to 2.16.0.
...
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.16.0.
2020-12-09 12:12:27 +01:00
f4e19e62bb
gnu: r-massspecwavelet: Update to 1.56.0.
...
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.56.0.
2020-12-09 12:12:27 +01:00
7f71341e5d
gnu: r-xbseq: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.22.0.
2020-12-09 12:12:27 +01:00
72476adef5
gnu: r-roar: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-roar): Update to 1.26.0.
2020-12-09 12:12:27 +01:00
94dee0af25
gnu: r-yaqcaffy: Update to 1.50.0.
...
* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.50.0.
2020-12-09 12:12:27 +01:00
48aaef23b3
gnu: r-simpleaffy: Update to 2.66.0.
...
* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.66.0.
2020-12-09 12:12:27 +01:00
3d41f0c297
gnu: r-gcrma: Update to 2.62.0.
...
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.62.0.
2020-12-09 12:12:27 +01:00
36f3a19ae6
gnu: r-somaticsignatures: Update to 2.26.0.
...
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.26.0.
2020-12-09 12:12:27 +01:00
0836ef6b69
gnu: r-gtrellis: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.22.0.
2020-12-09 12:12:27 +01:00
65ba4ba5f1
gnu: r-yamss: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.16.0.
2020-12-09 12:12:27 +01:00
ba0bf98dff
gnu: r-ebimage: Update to 4.32.0.
...
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.32.0.
2020-12-09 12:12:27 +01:00
ff8b915377
gnu: r-aucell: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.12.0.
2020-12-09 12:12:26 +01:00
85c6636bac
gnu: r-allelicimbalance: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.28.0.
2020-12-09 12:12:26 +01:00
577915421d
gnu: r-annotationtools: Update to 1.64.0.
...
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.64.0.
2020-12-09 12:12:26 +01:00
bc12a4b660
gnu: r-annotationfuncs: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.40.0.
2020-12-09 12:12:26 +01:00
8a7f7112f1
gnu: r-abaenrichment: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.20.0.
2020-12-09 12:12:26 +01:00
c3b69d6333
gnu: r-gofuncr: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.10.0.
2020-12-09 12:12:26 +01:00
2ba61c67aa
gnu: r-atacseqqc: Update to 1.14.4.
...
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.14.4.
2020-12-09 12:12:26 +01:00
392806183d
gnu: r-genomicscores: Update to 2.2.0.
...
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.2.0.
2020-12-09 12:12:26 +01:00
4b4cd2b8a2
gnu: r-motifstack: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.34.0.
2020-12-09 12:12:26 +01:00
301e549c22
gnu: r-motifbreakr: Update to 2.4.0.
...
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.4.0.
2020-12-09 12:12:26 +01:00
a2bae16780
gnu: r-motifdb: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.32.0.
2020-12-09 12:12:26 +01:00
41071edcac
gnu: r-rgadem: Update to 2.38.0.
...
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.38.0.
2020-12-09 12:12:26 +01:00
d5dcf1bb4b
gnu: r-bacon: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.18.0.
2020-12-09 12:12:26 +01:00
8816139e84
gnu: r-abseqr: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.8.0.
2020-12-09 12:12:26 +01:00
68efaafe32
gnu: r-a4: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-a4): Update to 1.38.0.
2020-12-09 12:12:25 +01:00
564d4279f2
gnu: r-a4base: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.38.0.
2020-12-09 12:12:25 +01:00
2fb8298c80
gnu: r-a4reporting: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.38.0.
2020-12-09 12:12:25 +01:00
85155e2ed9
gnu: r-a4preproc: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.38.0.
2020-12-09 12:12:25 +01:00
fa51705f19
gnu: r-a4classif: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.38.0.
2020-12-09 12:12:25 +01:00
c47a8cd9e1
gnu: r-a4core: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.38.0.
2020-12-09 12:12:25 +01:00
4f82931de4
gnu: r-mlinterfaces: Update to 1.70.0.
...
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.70.0.
2020-12-09 12:12:25 +01:00
3fd84a461d
gnu: r-clusterprofiler: Update to 3.18.0.
...
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.18.0.
2020-12-09 12:12:25 +01:00
eb3d17eb99
gnu: r-enrichplot: Update to 1.10.1.
...
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.10.1.
[propagated-inputs]: Remove r-annotationdbi, r-europepmc, r-ggplotify,
r-ggridges, and r-gridextra; add r-magrittr and r-shadowtext.
2020-12-09 12:12:25 +01:00
b7d1ea7bfa
gnu: Add r-shadowtext.
...
* gnu/packages/cran.scm (r-shadowtext): New variable.
2020-12-09 12:12:25 +01:00
aeb1d56f8f
gnu: r-dose: Update to 3.16.0.
...
* gnu/packages/bioconductor.scm (r-dose): Update to 3.16.0.
2020-12-09 12:12:25 +01:00
d68a9ffa68
gnu: r-fgsea: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.16.0.
2020-12-09 12:12:25 +01:00
7dabc6298f
gnu: r-sigpathway: Update to 1.58.0.
...
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.58.0.
2020-12-09 12:12:25 +01:00
33c905b9c0
gnu: r-anota: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-anota): Update to 1.38.0.
2020-12-09 12:12:24 +01:00
b2084e4d21
gnu: r-gosemsim: Update to 2.16.1.
...
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.16.1.
2020-12-09 12:12:24 +01:00
9813d24ddf
gnu: r-heatplus: Update to 2.36.0.
...
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.36.0.
2020-12-09 12:12:24 +01:00
67837d4afe
gnu: r-varianttools: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.32.0.
2020-12-09 12:12:24 +01:00
2a1a6d74d6
gnu: r-ioniser: Update to 2.14.0.
...
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.14.0.
2020-12-09 12:12:24 +01:00
37e09611f2
gnu: r-linnorm: Update to 2.14.0.
...
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.14.0.
2020-12-09 12:12:24 +01:00
50c5fee6b5
gnu: r-bumphunter: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.32.0.
2020-12-09 12:12:24 +01:00
0fd830feaa
gnu: r-siggenes: Update to 1.64.0.
...
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.64.0.
2020-12-09 12:12:24 +01:00
e89966e977
gnu: r-illuminaio: Update to 0.32.0.
...
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.32.0.
2020-12-09 12:12:24 +01:00
5c4edeef02
gnu: r-geoquery: Update to 2.58.0.
...
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.58.0.
2020-12-09 12:12:24 +01:00
bde9dc5b97
gnu: r-scone: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-scone): Update to 1.14.0.
2020-12-09 12:12:24 +01:00
8396c45eda
gnu: r-noiseq: Update to 2.34.0.
...
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.34.0.
2020-12-09 12:12:24 +01:00
38bc0bf808
gnu: r-monocle: Update to 2.18.0.
...
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.18.0.
2020-12-09 12:12:24 +01:00
532b106856
gnu: r-mast: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-mast): Update to 1.16.0.
2020-12-09 12:12:24 +01:00
e26b5eefda
gnu: r-icobra: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.18.0.
2020-12-09 12:12:23 +01:00
95b1f3507a
gnu: r-ihw: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.18.0.
2020-12-09 12:12:23 +01:00
378d67c950
gnu: r-lpsymphony: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.18.0.
2020-12-09 12:12:23 +01:00
37da451316
gnu: r-karyoploter: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.16.0.
2020-12-09 12:12:23 +01:00
939c888dac
gnu: r-ebseq: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.30.0.
2020-12-09 12:12:23 +01:00
850f4c2a36
gnu: r-dnacopy: Update to 1.64.0.
...
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.64.0.
2020-12-09 12:12:23 +01:00
43d8db0462
gnu: r-copynumber: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.30.0.
2020-12-09 12:12:23 +01:00
ff4d080422
gnu: r-chipexoqual: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.14.0.
2020-12-09 12:12:23 +01:00
967fc58392
gnu: r-savr: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-savr): Update to 1.28.0.
2020-12-09 12:12:23 +01:00
4217307fb3
gnu: r-destiny: Update to 3.4.0.
...
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.4.0.
[propagated-inputs]: Remove r-nbconvertr.
2020-12-09 12:12:23 +01:00
bbae34aae7
gnu: r-biocneighbors: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.8.0.
2020-12-09 12:12:23 +01:00
a55b1622c5
gnu: r-ruvseq: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.24.0.
2020-12-09 12:12:23 +01:00
874a774fcc
gnu: r-dnabarcodes: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.20.0.
2020-12-09 12:12:22 +01:00
41d6b41feb
gnu: r-inspect: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.20.0.
2020-12-09 12:12:22 +01:00
1c9bdfcf3c
gnu: r-plgem: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.62.0.
2020-12-09 12:12:22 +01:00
0ef40b23b6
gnu: r-rots: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-rots): Update to 1.18.0.
2020-12-09 12:12:22 +01:00
3dab4570fa
gnu: r-glimma: Update to 2.0.0.
...
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.0.0.
2020-12-09 12:12:22 +01:00
c97bcfbd78
gnu: r-goseq: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.42.0.
2020-12-09 12:12:22 +01:00
d27dfbf7f9
gnu: r-ctc: Update to 1.64.0.
...
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.64.0.
2020-12-09 12:12:22 +01:00
3813c9fe56
gnu: r-riboseqr: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.24.0.
2020-12-09 12:12:22 +01:00
03b655c524
gnu: r-riboprofiling: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.20.0.
2020-12-09 12:12:22 +01:00
63572b0c12
gnu: r-bayseq: Update to 2.24.0.
...
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.24.0.
2020-12-09 12:12:22 +01:00
3b6484097c
gnu: r-qdnaseq: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.26.0.
2020-12-09 12:12:22 +01:00
724000356e
gnu: r-cghcall: Update to 2.52.0.
...
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.52.0.
2020-12-09 12:12:22 +01:00
ee052d05f1
gnu: r-cghbase: Update to 1.50.0.
...
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.50.0.
2020-12-09 12:12:22 +01:00
6e6c627230
gnu: r-marray: Update to 1.68.0.
...
* gnu/packages/bioconductor.scm (r-marray): Update to 1.68.0.
2020-12-09 12:12:22 +01:00
d068d96743
gnu: r-chippeakanno: Update to 3.24.0.
...
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.24.0.
2020-12-09 12:12:21 +01:00
f519b4dc01
gnu: r-graph: Update to 1.68.0.
...
* gnu/packages/bioconductor.scm (r-graph): Update to 1.68.0.
2020-12-09 12:12:21 +01:00
1e6920c521
gnu: r-multtest: Update to 2.46.0.
...
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.46.0.
2020-12-09 12:12:21 +01:00
341ebaaa01
gnu: r-diffbind: Update to 3.0.7.
...
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.7.
[propagated-inputs]: Add r-apeglm, r-ashr, and r-greylistchip; remove r-edger.
2020-12-09 12:12:21 +01:00
6e396c4bff
gnu: Add r-greylistchip.
...
* gnu/packages/bioconductor.scm (r-greylistchip): New variable.
2020-12-09 12:12:21 +01:00
c84762c446
gnu: Add r-ashr.
...
* gnu/packages/cran.scm (r-ashr): New variable.
2020-12-09 12:12:21 +01:00
755d16a3b0
gnu: Add r-mixsqp.
...
* gnu/packages/cran.scm (r-mixsqp): New variable.
2020-12-09 12:12:21 +01:00
deda2319f7
gnu: Add r-etrunct.
...
* gnu/packages/cran.scm (r-etrunct): New variable.
2020-12-09 12:12:21 +01:00
a7f4a8b4d0
gnu: Add r-invgamma.
...
* gnu/packages/cran.scm (r-invgamma): New variable.
2020-12-09 12:12:21 +01:00
3b399e514f
gnu: Add r-apeglm.
...
* gnu/packages/bioconductor.scm (r-apeglm): New variable.
2020-12-09 12:12:21 +01:00
a0df9b93ef
gnu: Add r-rcppnumerical.
...
* gnu/packages/bioconductor.scm (r-rcppnumerical): New variable.
2020-12-09 12:12:21 +01:00
e9b60a2901
gnu: r-qvalue: Update to 2.22.0.
...
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.22.0.
2020-12-09 12:12:21 +01:00
9af6fdf861
gnu: r-oligo: Update to 1.54.0.
...
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.54.0.
2020-12-09 12:12:21 +01:00
464df5ccbb
gnu: r-oligoclasses: Update to 1.52.0.
...
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.52.0.
2020-12-09 12:12:21 +01:00
d72c4c98c8
gnu: r-geneplotter: Update to 1.68.0.
...
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.68.0.
2020-12-09 12:12:20 +01:00
c03c76344e
gnu: r-reportingtools: Update to 2.30.0.
...
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.30.0.
2020-12-09 12:12:20 +01:00
d1ff3604b7
gnu: r-regioner: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.22.0.
2020-12-09 12:12:20 +01:00
fa7578b32f
gnu: r-hpar: Update to 1.32.1.
...
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.32.1.
2020-12-09 12:12:20 +01:00
7d56302332
gnu: r-annotate: Update to 1.68.0.
...
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.68.0.
[propagated-inputs]: Remove 'r-rcurl', add 'r-httr'.
2020-12-09 12:12:20 +01:00
8e6a2c328f
gnu: r-affxparser: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.62.0.
2020-12-09 12:12:20 +01:00
a92219b45f
gnu: r-affycoretools: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.62.0.
2020-12-09 12:12:20 +01:00
3e82f9ccaf
gnu: r-affycontam: Update to 1.48.0.
...
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.48.0.
2020-12-09 12:12:20 +01:00
fa2d16cc27
gnu: r-affycompatible: Update to 1.50.0.
...
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.50.0.
2020-12-09 12:12:20 +01:00
c472549f67
gnu: r-affycomp: Update to 1.66.0.
...
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.66.0.
2020-12-09 12:12:20 +01:00
aa311eaa74
gnu: r-biocgenerics: Update to 0.36.0.
...
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.36.0.
2020-12-09 12:12:20 +01:00
70ab99096d
gnu: r-biocversion: Update to 3.12.0.
...
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.12.0.
2020-12-09 12:12:20 +01:00
a3e2e53837
gnu: r-cummerbund: Update to 2.32.0.
...
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.32.0.
2020-12-09 12:12:20 +01:00
5ef637ddc7
gnu: r-coverageview: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.28.0.
2020-12-09 12:12:20 +01:00
25f4e6520e
gnu: r-ideoviz: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.26.0.
2020-12-09 12:12:20 +01:00
533935ccf7
services: science.scm: Add missing copyright headers.
...
This module was always supposed to have the GPL3 header in place.
Follow-up to 8f19e63f76
2020-12-09 12:55:02 +02:00
53c480006b
gnu: monero-gui: Update to 0.17.1.6.
...
* gnu/packages/finance.scm (monero-gui): Update to 0.17.1.6.
2020-12-09 11:34:25 +01:00
5560bd7b6b
gnu: monero: Update to 0.17.1.6.
...
* gnu/packages/finance.scm (monero): Update to 0.17.1.6.
2020-12-09 11:34:25 +01:00
8e2aad26ae
gnu: Add lemonbar-xft.
...
* gnu/packages/wm.scm (lemonbar-xft): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-09 09:10:33 +00:00
9941036559
gnu: Add go-github-com-aws-sdk.
...
* gnu/packages/golang.scm (go-github-com-aws-sdk): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-12-09 09:45:35 +02:00
016501aec6
gnu: Add go-github-com-jmespath-go-jmespath.
...
* gnu/packages/golang.scm (go-github-com-jmespath-go-jmespath): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-12-09 09:45:35 +02:00
f7c2896e52
gnu: Add go-github-com-go-sql-driver-mysql.
...
* gnu/packages/golang.scm (go-github-com-go-sql-driver-mysql): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-12-09 09:45:31 +02:00
2b0185a74b
gnu: linux-libre 4.14: Update to 4.14.211.
...
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.211.
(linux-libre-4.14-pristine-source): Update hash.
2020-12-09 01:08:15 -05:00
a2eae5ec4a
gnu: linux-libre 4.19: Update to 4.19.162.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.162.
(linux-libre-4.19-pristine-source): Update hash.
2020-12-09 01:08:15 -05:00
66b1b55148
gnu: linux-libre 5.4: Update to 5.4.82.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.82.
(linux-libre-5.4-pristine-source): Update hash.
2020-12-09 01:08:14 -05:00
54f777ca4e
gnu: linux-libre: Update to 5.9.13.
...
* gnu/packages/linux.scm (linux-libre-5.9-version): Update to 5.9.13.
(linux-libre-5.9-pristine-source): Update hash.
2020-12-09 01:08:09 -05:00
02b21f35cc
gnu: OpenSSL: Update to 1.1.1i [fixes CVE-2020-1971].
...
* gnu/packages/tls.scm (openssl)[replacement]: Update replacement to 1.1.1i
(openssl-1.1.1g): Replace with ...
(openssl-1.1.1i): ... new variable.
2020-12-08 19:48:09 -05:00
456421fc0f
gnu: guix: Update to 799f066.
...
* gnu/packages/package-management.scm (guix): Update to 799f066
2020-12-08 23:38:04 +01:00
4a98735297
gnu: autotools: Add version 2.70.
...
* gnu/packages/autotools.scm (autoconf): Rename to...
(autoconf-2.69): ... this.
(autoconf): Define as an alias for AUTOCONF-2.69.
(autoconf-2.70): New variable.
2020-12-08 22:28:00 +01:00
20e5658c04
gnu: ocaml-menhir: Update to 20200211.
...
* gnu/packages/ocaml.scm (ocaml-menhir): Update to 20200211.
[build-system]: Switch from gnu to dune.
[arguments]: Remove phases and make-flags.
[native-inputs]: Remove field.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 20:18:11 +00:00
2d1a621b8d
gnu: mruby: Update to 2.1.2.
...
* gnu/packages/ruby.scm (mruby): Update to 2.1.2.
2020-12-08 22:09:30 +02:00
8a55a3994c
gnu: Add mypaint.
...
* gnu/packages/image.scm (mypaint): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 20:06:38 +00:00
c9c3569ad9
gnu: libmypaint: Update to 1.6.1.
...
Needed by mypaint@2.0.1.
* gnu/packages/gimp.scm (libmypaint): Update to 1.6.1.
2020-12-08 20:06:34 +00:00
e1d3b07ffc
gnu: isync: Use OpenSSL 1.1.
...
* gnu/packages/mail.scm (isync)[inputs]: Replace openssl-1.0 with openssl.
2020-12-08 13:25:27 -05:00
adbb62f16e
gnu: fcitx5-material-color-theme: Add source file-name.
...
* gnu/packages/fcitx5.scm (fcitx5-material-color-theme)[source]: Add
file-name field.
2020-12-08 18:14:31 +02:00
af34f757ce
gnu: Add fcitx5-material-color-theme.
...
* gnu/packages/fcitx5.scm (fcitx5-material-color-theme): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
ac1c7530d8
gnu: Add fcitx5-configtool.
...
* gnu/packages/fcitx5.scm (fcitx5-configtool): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
9a23698ecd
gnu: Add fcitx5-chinese-addons.
...
* gnu/packages/fcitx5.scm (fcitx5-chinese-addons): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
d4aca38b50
gnu: Add fcitx5-gtk.
...
* gnu/packages/fcitx5.scm (fcitx5-gtk): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
4394d3721a
gnu: Add fcitx5-qt.
...
* gnu/packages/fcitx5.scm (fcitx5-qt): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
69d3419ca3
gnu: Add libime.
...
* gnu/packages/fcitx5.scm (libime): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
2d07803be8
gnu: Add fcitx5-lua.
...
* gnu/packages/fcitx5.scm (fcitx5-lua): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
aa5cfb39a5
gnu: Add fcitx5.
...
* gnu/packages/fcitx5.scm (fcitx5): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
ad6cf3d4ad
gnu: Add xcb-imdkit.
...
* gnu/packages/fcitx5.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
770fb659a6
services: cuirass: Add queue-size option.
...
* gnu/services/cuirass.scm (<cuirass-configuration>): Add "queue-size" field.
(cuirass-shepherd-service): Honor it.
* doc/guix.texi (Continuous Integration): Document it.
2020-12-08 11:56:26 +01:00
2dd4f389c7
gnu: cuirass: Update to 0.0.1-56.697fa14.
...
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-56.697fa14.
2020-12-08 11:48:53 +01:00
ab58b2cc32
gnu: Add cjson.
...
* gnu/packages/javascript.scm (cjson): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 09:26:46 +00:00
b5c51ae086
gnu: Add tiny-bignum.
...
* gnu/packages/maths.scm (tiny-bignum): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 09:21:50 +00:00
2d8deaa06e
gnu: trezord: Update to 2.0.30.
...
* gnu/packages/finance.scm (trezord): Update to 2.0.30.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 08:50:43 +00:00
2d9acf675a
gnu: Add go-gopkg-in-natefinch-lumberjack.v2.
...
* gnu/packages/golang.scm (go-gopkg-in-natefinch-lumberjack.v2): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 08:50:43 +00:00
2d0716e081
gnu: Add go-github-com-gorilla-csrf.
...
* gnu/packages/golang.scm (go-github-com-gorilla-csrf): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 08:37:49 +00:00
4368b9b2d7
gnu: Add go-github-com-gorilla-securecookie.
...
* gnu/packages/golang.scm (go-github-com-gorilla-securecookie): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 08:37:49 +00:00
d2a42cee0b
gnu: Add go-github-com-gorilla-handlers.
...
* gnu/packages/golang.scm (go-github-com-gorilla-handlers): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 08:37:49 +00:00
33504d4d70
gnu: Add go-github-com-felixge-httpsnoop.
...
* gnu/packages/golang.scm (go-github-com-felixge-httpsnoop): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 08:37:44 +00:00
836428c793
gnu: go-github-com-gorilla-mux: Update to 1.8.0.
...
* gnu/packages/golang.scm (go-github-com-gorilla-mux): Update to 1.8.0.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 08:31:29 +00:00
53cd301b08
gnu: scummvm: Update source URL.
...
* gnu/packages/emulators.scm (scummvm)[source]: Use HTTPS & new
subdomain.
Reported by Matthew Brooks <matthewfbrooks@mailbox.org>.
2020-12-08 08:46:54 +01:00
dcf8dd2be5
gnu: gita: Install shell completions.
...
* gnu/packages/version-control.scm (gita)[arguments]: Add phase
install-shell-completions.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-12-08 08:09:21 +03:00
b5e52d8225
gnu: Add emacs-burly.
...
* gnu/packages/emacs-xyz.scm (emacs-burly): New variable.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-12-08 07:59:24 +03:00
fedf7d5721
gnu: Add emacs-map.
...
* gnu/packages/emacs-xyz.scm (emacs-map): New variable.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-12-08 07:59:22 +03:00
403dda2e66
gnu: shadowsocks: Build against openssl.
...
This patch allows shadowsocks to be used without supplying libopenssl in its
configuration. See also https://unix.stackexchange.com/questions/623324/ .
* gnu/packages/networking.scm (shadowsocks)[inputs]: Add openssl.
[#:phases]: Add patch-crypto-paths.
Signed-off-by: Marius Bakke <marius@gnu.org>
2020-12-08 00:45:56 +01:00
adf0edadef
gnu: qoauth: Minor cosmetic improvements.
...
* gnu/packages/web.scm (qoauth)[arguments]: Add #:tests?. Don't delete
'check' phase. Override 'configure' instead of adding new phase.
2020-12-08 00:45:56 +01:00
627b70e3ac
gnu: qoauth: Fix build failure.
...
Fixes <https://bugs.gnu.org/45031 >.
Reported by Distopico <distopico@riseup.net>.
* gnu/packages/web.scm (qoauth)[arguments]: Add phase
'adjust-mkspecs-directory'.
2020-12-08 00:45:56 +01:00
63be1a7dae
gnu: qca: Correct license.
...
* gnu/packages/kde.scm (qca)[license]: Change from LGPL2.1 to LGPL2.1+.
2020-12-08 00:45:56 +01:00
608113c083
gnu: Add gita.
...
* gnu/packages/version-control.scm (gita): New variable.
2020-12-08 01:49:38 +03:00
ac3af8f7ed
gnu: imapfilter: Update to 2.7.5.
...
* gnu/packages/mail.scm (imapfilter): Update to 2.7.5.
2020-12-07 23:44:36 +01:00
f6b1288913
gnu: grammalecte: Update to 2.0.0.
...
* gnu/packages/dictionaries.scm (grammalecte): Update to 2.0.0.
2020-12-07 22:43:57 +01:00
906fc9116f
gnu: Add glmark2.
...
* gnu/packages/gl.scm (glmark2): New variable.
2020-12-07 16:08:42 -05:00
476f19f57a
gnu: xfce4-whiskermenu-plugin: Fix installed shell script.
...
* gnu/packages/xfce.scm (xfce4-whiskermenu-plugin): Fix installed shell script.
[arguments]: Add phase fix-shell-script to substitute paths to xfce4-panel and
gettext.
[inputs]: Add gettext-minimal.
Co-authored-by: Kei Kebreau <kkebreau@posteo.net>
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2020-12-07 16:08:41 -05:00
d2ff5931ab
gnu: bombadillo: Update to 2.3.3.
...
* gnu/packages/web-browsers.scm (bombadillo): Update to 2.3.3.
2020-12-07 21:52:22 +01:00
df11cf2f66
gnu: qutebrowser: Update to 1.14.1.
...
* gnu/packages/web-browsers.scm (qutebrowser): Update to 1.14.1.
2020-12-07 21:52:22 +01:00
5fb085da6b
gnu: yapet: Omit duplicate licence files.
...
* gnu/packages/password-utils.scm (yapet)[arguments]: Set a better --docdir.
2020-12-07 21:52:22 +01:00
1385ac55a4
gnu: yapet: Update to 2.5.
...
* gnu/packages/password-utils.scm (yapet): Update to 2.5.
2020-12-07 21:52:22 +01:00
8c0d6a533a
gnu: feh: Update to 3.6.1.
...
* gnu/packages/image-viewers.scm (feh): Update to 3.6.1.
2020-12-07 21:52:22 +01:00
36e80e32f3
gnu: libmanette: Update to 0.2.6.
...
* gnu/packages/games.scm (libmanette): Update to 0.2.6.
2020-12-07 21:52:22 +01:00
88a26bfd52
gnu: thermald: Update to 2.4.1.
...
* gnu/packages/admin.scm (thermald): Update to 2.4.1.
2020-12-07 21:52:22 +01:00
08d8c2d3c0
gnu: emacs-moody: Update to 0.5.4.
...
* gnu/packages/emacs-xyz.scm (emacs-moody): Update to 0.5.4.
2020-12-07 17:02:10 +01:00
985570ad30
gnu: Add emacs-modus-themes.
...
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): New variable.
(emacs-modus-operandi-theme, emacs-modus-vivendi-theme): Deprecate package in
favor of emacs-modus-themes.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-07 16:27:03 +01:00
aecd2a13cb
services: openssh: Warn about 'password-authentication?' default.
...
Fixes <https://bugs.gnu.org/44808 >.
Reported by Christopher Lemmer Webber <cwebber@dustycloud.org>.
* gnu/services/ssh.scm (true-but-soon-false): New procedure.
(<openssh-configuration>)[password-authentication?]: Change default to
'true-but-soon-false'.
* gnu/installer/services.scm (%system-services): Explicitly set
'password-authentication?' to #f.
2020-12-07 12:48:26 +01:00
859b362f81
services: hurd-vm: Avoid circular dependency with (gnu system images hurd).
...
* gnu/services/virtualization.scm (hurd-vm-disk-image): Use
'lookup-image-type-by-name' instead of referring to 'hurd-disk-image'
from (gnu system images hurd).
2020-12-07 12:48:26 +01:00
27cf238744
Revert "gnu: vim: Run more tests."
...
This reverts commit 17a53aec7a
2020-12-07 12:48:07 +02:00
3832704aff
gnu: minimap2: Fix build on aarch64-linux.
...
* gnu/packages/bioinformatics.scm (minimap2)[arguments]: Adjust
configure-flags to be better per-architecture.
[source]: Add patch.
* gnu/packages/patches/minimap2-aarch64-support.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2020-12-07 12:48:07 +02:00
f48cd014f3
gnu: minimap2: Prepare for cross compilation.
...
* gnu/packages/bioinformatics.scm (minimap2)[arguments]: Use
cc-for-target.
2020-12-07 12:48:01 +02:00
65555198b2
gnu: emacs-with-editor: Update to 3.0.2.
...
* gnu/packages/emacs-xyz.scm (emacs-with-editor): Update to 3.0.2.
[propagated-inputs]: Changed emacs-dash to emacs-async.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-07 11:40:47 +01:00
e461d3b750
service: Add shepherd discover action.
...
* gnu/services/base.scm (shepherd-discover-action): New procedure,
(guix-shepherd-service)[<actions>]: add it,
[<start>]: honor it.
* doc/guix.texi (Invoking guix-daemon): Document it.
2020-12-07 10:39:21 +01:00
92f7c11af2
prometheus-node-exporter: Support extra options.
...
There are plenty of options supported that the Guix configuration record
doesn't help you with, so add this field to allow users to do their own thing.
* gnu/services/monitoring.scm (<prometheus-node-exporter-configuration>): Add
extra-options field.
(prometheus-node-exporter-shepherd-service): Handle the extra options.
* doc/guix.texi (Prometheus Node Exporter Service): Document this.
2020-12-07 09:08:33 +00:00
fd14385581
prometheus-node-exporter: Enable the textfile collector.
...
* gnu/services/monitoring.scm (<prometheus-node-exporter-configuration>): Add
textfile-directory.
(prometheus-node-exporter-textfile-directory,
prometheus-node-exporter-activation): New procedures.
(prometheus-node-exporter-shepherd-service): Pass
--collector.textfile.directoryto the service.
(prometheus-node-exporter-service-type): Extend the activation service type.
* doc/guix.texi (Prometheus Node Exporter Service): Document.
2020-12-07 09:08:20 +00:00
fa0975ad71
services: prometheus-node-exporter: Use a log file.
...
This makes the logs easier to find and read.
* gnu/services/monitoring.scm (prometheus-node-exporter-shepherd-service):
Pass #:log-file to make-forkexec-constructor.
2020-12-07 09:08:09 +00:00
6574298e4e
prometheus-node-exporter: Add user and group.
...
So it doesn't run as root, and because this will help with the textfile
exporter.
* gnu/services/monitoring.scm (%prometheus-node-exporter-accounts): New
variable.
(prometheus-node-exporter-shepherd-service): Use the relevant user and group.
(prometheus-node-exporter-service-type): Extend the account service type.
2020-12-07 09:07:54 +00:00
zimoun
Roel Janssen
Efraim Flashner
Guillaume Le Vaillant
elaexuotee@wilsonb.com
Ryan Prior
Leo Famulari
Ludovic Courtès
Vincent Legoll
L p R n d n
Christopher Baines
Zhu Zihao
Mathieu Othacehe
Martin Becze
Tobias Geerinckx-Rice
Michael Rohleder
Ryan Desfosses
Leo Prikler
Marius Bakke
Oleg Pykhalov
Nicolas Goaziou
Kei Kebreau
André Alexandre Gomes