zimoun
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gnu: r-reactomepa: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.34.0.
2020-12-09 12:12:34 +01:00
zimoun
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gnu: r-graphite: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-graphite): Update to 1.36.0.
2020-12-09 12:12:34 +01:00
zimoun
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gnu: r-biobroom: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.22.0.
2020-12-09 12:12:33 +01:00
zimoun
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gnu: r-bioassayr: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.0.
2020-12-09 12:12:33 +01:00
zimoun
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gnu: r-chemminer: Update to 3.42.0.
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* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.0.
2020-12-09 12:12:33 +01:00
zimoun
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gnu: r-bigpint: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.6.0.
2020-12-09 12:12:33 +01:00
zimoun
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gnu: r-bigmemoryextras: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-bigmemoryextras): Update to 1.38.0.
2020-12-09 12:12:33 +01:00
zimoun
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gnu: r-biggr: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-biggr): Update to 1.26.0.
2020-12-09 12:12:33 +01:00
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gnu: r-hyperdraw: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.42.0.
2020-12-09 12:12:33 +01:00
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gnu: r-hypergraph: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.62.0.
2020-12-09 12:12:33 +01:00
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gnu: r-rsbml: Update to 2.48.0.
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* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.48.0.
2020-12-09 12:12:33 +01:00
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gnu: r-bifet: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-bifet): Update to 1.10.0.
2020-12-09 12:12:33 +01:00
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gnu: r-bicare: Update to 1.48.0.
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* gnu/packages/bioconductor.scm (r-bicare): Update to 1.48.0.
2020-12-09 12:12:33 +01:00
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gnu: r-bhc: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-bhc): Update to 1.42.0.
2020-12-09 12:12:33 +01:00
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gnu: r-bgx: Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-bgx): Update to 1.56.0.
2020-12-09 12:12:33 +01:00
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gnu: r-bgmix: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.50.0.
2020-12-09 12:12:32 +01:00
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gnu: r-unifiedwmwqpcr: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.26.0.
2020-12-09 12:12:32 +01:00
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gnu: r-htqpcr: Update to 1.44.0.
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* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.44.0.
2020-12-09 12:12:32 +01:00
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gnu: r-variancepartition: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.20.0.
2020-12-09 12:12:32 +01:00
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gnu: r-variantfiltering: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.26.0.
2020-12-09 12:12:32 +01:00
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gnu: r-timeseriesexperiment: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.8.0.
2020-12-09 12:12:32 +01:00
zimoun
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gnu: r-wavcluster: Update to 2.24.0.
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* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.24.0.
2020-12-09 12:12:32 +01:00
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gnu: r-reqon: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-reqon): Update to 1.36.0.
2020-12-09 12:12:32 +01:00
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gnu: r-seqbias: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.38.0.
2020-12-09 12:12:32 +01:00
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gnu: r-gdsfmt: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.26.0.
2020-12-09 12:12:32 +01:00
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gnu: r-roc: Update to 1.66.0.
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* gnu/packages/bioconductor.scm (r-roc): Update to 1.66.0.
2020-12-09 12:12:31 +01:00
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gnu: r-genie3: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-genie3): Update to 1.12.0.
2020-12-09 12:12:31 +01:00
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gnu: r-cicero: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-cicero): Update to 1.8.0.
2020-12-09 12:12:31 +01:00
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gnu: r-rcistarget: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.10.0.
2020-12-09 12:12:31 +01:00
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gnu: r-depecher: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-depecher): Update to 1.6.0.
2020-12-09 12:12:31 +01:00
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gnu: r-mixomics: Update to 6.14.0.
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* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.14.0.
2020-12-09 12:12:31 +01:00
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gnu: r-flowsom: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.22.0.
2020-12-09 12:12:31 +01:00
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gnu: r-cytoml: Update to 2.2.1.
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* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.2.1.
2020-12-09 12:12:31 +01:00
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gnu: r-opencyto: Update to 2.2.0.
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* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.2.0.
2020-12-09 12:12:30 +01:00
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gnu: r-flowstats: Update to 4.2.0.
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* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.2.0.
2020-12-09 12:12:30 +01:00
zimoun
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gnu: r-flowworkspace: Update to 4.2.0.
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* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.2.0.
[inputs]: Add zlib.
[propagated-inputs]: Add r-aws-s3 and r-aws-signature. Remove r-stringr.
2020-12-09 12:12:30 +01:00
zimoun
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gnu: Add r-aws-s3.
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* gnu/packages/cran.scm (r-aws-s3): New variable.
2020-12-09 12:12:30 +01:00
zimoun
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gnu: Add r-aws-signature.
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* gnu/packages/cran.scm (r-aws-signature): New variable.
2020-12-09 12:12:30 +01:00
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gnu: r-rprotobuflib: Update to 2.2.0.
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* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.2.0.
2020-12-09 12:12:30 +01:00
zimoun
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gnu: r-flowclust: Update to 3.28.0.
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* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.28.0.
2020-12-09 12:12:30 +01:00
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gnu: r-flowviz: Update to 1.54.0.
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* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.54.0.
2020-12-09 12:12:30 +01:00
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gnu: r-ncdfflow: Update to 2.36.0.
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* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.36.0.
2020-12-09 12:12:30 +01:00
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gnu: r-flowmeans: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.50.0.
2020-12-09 12:12:30 +01:00
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gnu: r-flowcore: Update to 2.2.0.
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* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.2.0.
[propagated-inputs]: Add r-s4vectors.
2020-12-09 12:12:29 +01:00
zimoun
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gnu: r-cytolib: Update to 2.2.0.
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* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.2.0.
[native-inputs]: Add pkg-config.
2020-12-09 12:12:29 +01:00
zimoun
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gnu: r-consensusclusterplus: Update to 1.54.0.
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* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.54.0.
2020-12-09 12:12:29 +01:00
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gnu: r-flowutils: Update to 1.54.0.
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* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.54.0.
2020-12-09 12:12:29 +01:00
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gnu: r-rsubread: Update to 2.4.2.
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* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.4.2.
2020-12-09 12:12:29 +01:00
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gnu: r-annotatr: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.16.0.
2020-12-09 12:12:29 +01:00
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gnu: r-biosigner: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.18.0.
2020-12-09 12:12:29 +01:00
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gnu: r-ropls: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-ropls): Update to 1.22.0.
2020-12-09 12:12:29 +01:00
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gnu: r-multidataset: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.18.0.
2020-12-09 12:12:29 +01:00
zimoun
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gnu: r-birewire: Update to 3.22.0.
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* gnu/packages/bioconductor.scm (r-birewire): Update to 3.22.0.
2020-12-09 12:12:29 +01:00
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gnu: r-rqc: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-rqc): Update to 1.24.0.
2020-12-09 12:12:29 +01:00
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gnu: r-quasr: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-quasr): Update to 1.30.0.
2020-12-09 12:12:29 +01:00
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gnu: r-rhisat2: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.6.0.
2020-12-09 12:12:28 +01:00
zimoun
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gnu: r-sgseq: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.24.0.
2020-12-09 12:12:28 +01:00
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gnu: r-rbowtie: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.30.0.
2020-12-09 12:12:28 +01:00
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gnu: r-iclusterplus: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.26.0.
2020-12-09 12:12:28 +01:00
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gnu: r-biocfilecache: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.14.0.
2020-12-09 12:12:28 +01:00
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gnu: r-arrmnormalization: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.30.0.
2020-12-09 12:12:28 +01:00
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gnu: r-progeny: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-progeny): Update to 1.12.0.
2020-12-09 12:12:28 +01:00
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gnu: r-rbowtie2: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.12.0.
2020-12-09 12:12:28 +01:00
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gnu: r-zfpkm: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.12.0.
2020-12-09 12:12:28 +01:00
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gnu: r-webbioc: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.62.0.
2020-12-09 12:12:28 +01:00
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gnu: r-widgettools: Update to 1.68.0.
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* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.68.0.
2020-12-09 12:12:28 +01:00
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gnu: r-wiggleplotr: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.14.0.
2020-12-09 12:12:28 +01:00
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gnu: r-wrench: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-wrench): Update to 1.8.0.
2020-12-09 12:12:28 +01:00
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gnu: r-xcms: Update to 3.12.0.
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* gnu/packages/bioconductor.scm (r-xcms): Update to 3.12.0.
[propagated-inputs]: Add r-mscoreutils.
2020-12-09 12:12:27 +01:00
zimoun
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gnu: Add r-mscoreutils.
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* gnu/packages/bioconductor.scm (r-mscoreutils): New variable.
2020-12-09 12:12:27 +01:00
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gnu: Update r-msnbase to 2.16.0.
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* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.16.0.
2020-12-09 12:12:27 +01:00
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gnu: r-massspecwavelet: Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.56.0.
2020-12-09 12:12:27 +01:00
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gnu: r-xbseq: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.22.0.
2020-12-09 12:12:27 +01:00
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gnu: r-roar: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-roar): Update to 1.26.0.
2020-12-09 12:12:27 +01:00
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gnu: r-yaqcaffy: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.50.0.
2020-12-09 12:12:27 +01:00
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gnu: r-simpleaffy: Update to 2.66.0.
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* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.66.0.
2020-12-09 12:12:27 +01:00
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gnu: r-gcrma: Update to 2.62.0.
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* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.62.0.
2020-12-09 12:12:27 +01:00
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gnu: r-somaticsignatures: Update to 2.26.0.
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* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.26.0.
2020-12-09 12:12:27 +01:00
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gnu: r-gtrellis: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.22.0.
2020-12-09 12:12:27 +01:00
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gnu: r-yamss: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-yamss): Update to 1.16.0.
2020-12-09 12:12:27 +01:00
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gnu: r-ebimage: Update to 4.32.0.
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* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.32.0.
2020-12-09 12:12:27 +01:00
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gnu: r-aucell: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-aucell): Update to 1.12.0.
2020-12-09 12:12:26 +01:00
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gnu: r-allelicimbalance: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.28.0.
2020-12-09 12:12:26 +01:00
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gnu: r-annotationtools: Update to 1.64.0.
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* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.64.0.
2020-12-09 12:12:26 +01:00
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gnu: r-annotationfuncs: Update to 1.40.0.
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* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.40.0.
2020-12-09 12:12:26 +01:00
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gnu: r-abaenrichment: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.20.0.
2020-12-09 12:12:26 +01:00
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gnu: r-gofuncr: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.10.0.
2020-12-09 12:12:26 +01:00
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gnu: r-atacseqqc: Update to 1.14.4.
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* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.14.4.
2020-12-09 12:12:26 +01:00
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gnu: r-genomicscores: Update to 2.2.0.
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* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.2.0.
2020-12-09 12:12:26 +01:00
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gnu: r-motifstack: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.34.0.
2020-12-09 12:12:26 +01:00
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gnu: r-motifbreakr: Update to 2.4.0.
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* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.4.0.
2020-12-09 12:12:26 +01:00
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gnu: r-motifdb: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.32.0.
2020-12-09 12:12:26 +01:00
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gnu: r-rgadem: Update to 2.38.0.
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* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.38.0.
2020-12-09 12:12:26 +01:00
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gnu: r-bacon: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-bacon): Update to 1.18.0.
2020-12-09 12:12:26 +01:00
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gnu: r-abseqr: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.8.0.
2020-12-09 12:12:26 +01:00
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gnu: r-a4: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-a4): Update to 1.38.0.
2020-12-09 12:12:25 +01:00
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gnu: r-a4base: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-a4base): Update to 1.38.0.
2020-12-09 12:12:25 +01:00
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gnu: r-a4reporting: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.38.0.
2020-12-09 12:12:25 +01:00
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gnu: r-a4preproc: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.38.0.
2020-12-09 12:12:25 +01:00
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gnu: r-a4classif: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.38.0.
2020-12-09 12:12:25 +01:00
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gnu: r-a4core: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-a4core): Update to 1.38.0.
2020-12-09 12:12:25 +01:00
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gnu: r-mlinterfaces: Update to 1.70.0.
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* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.70.0.
2020-12-09 12:12:25 +01:00
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gnu: r-clusterprofiler: Update to 3.18.0.
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* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.18.0.
2020-12-09 12:12:25 +01:00
Roel Janssen
eb3d17eb99
gnu: r-enrichplot: Update to 1.10.1.
...
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.10.1.
[propagated-inputs]: Remove r-annotationdbi, r-europepmc, r-ggplotify,
r-ggridges, and r-gridextra; add r-magrittr and r-shadowtext.
2020-12-09 12:12:25 +01:00
Roel Janssen
b7d1ea7bfa
gnu: Add r-shadowtext.
...
* gnu/packages/cran.scm (r-shadowtext): New variable.
2020-12-09 12:12:25 +01:00
zimoun
aeb1d56f8f
gnu: r-dose: Update to 3.16.0.
...
* gnu/packages/bioconductor.scm (r-dose): Update to 3.16.0.
2020-12-09 12:12:25 +01:00
zimoun
d68a9ffa68
gnu: r-fgsea: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.16.0.
2020-12-09 12:12:25 +01:00
zimoun
7dabc6298f
gnu: r-sigpathway: Update to 1.58.0.
...
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.58.0.
2020-12-09 12:12:25 +01:00
zimoun
33c905b9c0
gnu: r-anota: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-anota): Update to 1.38.0.
2020-12-09 12:12:24 +01:00
zimoun
b2084e4d21
gnu: r-gosemsim: Update to 2.16.1.
...
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.16.1.
2020-12-09 12:12:24 +01:00
zimoun
9813d24ddf
gnu: r-heatplus: Update to 2.36.0.
...
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.36.0.
2020-12-09 12:12:24 +01:00
zimoun
67837d4afe
gnu: r-varianttools: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.32.0.
2020-12-09 12:12:24 +01:00
zimoun
2a1a6d74d6
gnu: r-ioniser: Update to 2.14.0.
...
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.14.0.
2020-12-09 12:12:24 +01:00
zimoun
37e09611f2
gnu: r-linnorm: Update to 2.14.0.
...
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.14.0.
2020-12-09 12:12:24 +01:00
zimoun
50c5fee6b5
gnu: r-bumphunter: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.32.0.
2020-12-09 12:12:24 +01:00
zimoun
0fd830feaa
gnu: r-siggenes: Update to 1.64.0.
...
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.64.0.
2020-12-09 12:12:24 +01:00
zimoun
e89966e977
gnu: r-illuminaio: Update to 0.32.0.
...
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.32.0.
2020-12-09 12:12:24 +01:00
zimoun
5c4edeef02
gnu: r-geoquery: Update to 2.58.0.
...
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.58.0.
2020-12-09 12:12:24 +01:00
zimoun
bde9dc5b97
gnu: r-scone: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-scone): Update to 1.14.0.
2020-12-09 12:12:24 +01:00
zimoun
8396c45eda
gnu: r-noiseq: Update to 2.34.0.
...
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.34.0.
2020-12-09 12:12:24 +01:00
zimoun
38bc0bf808
gnu: r-monocle: Update to 2.18.0.
...
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.18.0.
2020-12-09 12:12:24 +01:00
zimoun
532b106856
gnu: r-mast: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-mast): Update to 1.16.0.
2020-12-09 12:12:24 +01:00
zimoun
e26b5eefda
gnu: r-icobra: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.18.0.
2020-12-09 12:12:23 +01:00
zimoun
95b1f3507a
gnu: r-ihw: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.18.0.
2020-12-09 12:12:23 +01:00
zimoun
378d67c950
gnu: r-lpsymphony: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.18.0.
2020-12-09 12:12:23 +01:00
zimoun
37da451316
gnu: r-karyoploter: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.16.0.
2020-12-09 12:12:23 +01:00
zimoun
939c888dac
gnu: r-ebseq: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.30.0.
2020-12-09 12:12:23 +01:00
zimoun
850f4c2a36
gnu: r-dnacopy: Update to 1.64.0.
...
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.64.0.
2020-12-09 12:12:23 +01:00
zimoun
43d8db0462
gnu: r-copynumber: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.30.0.
2020-12-09 12:12:23 +01:00
zimoun
ff4d080422
gnu: r-chipexoqual: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.14.0.
2020-12-09 12:12:23 +01:00
zimoun
967fc58392
gnu: r-savr: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-savr): Update to 1.28.0.
2020-12-09 12:12:23 +01:00
zimoun
4217307fb3
gnu: r-destiny: Update to 3.4.0.
...
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.4.0.
[propagated-inputs]: Remove r-nbconvertr.
2020-12-09 12:12:23 +01:00
zimoun
bbae34aae7
gnu: r-biocneighbors: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.8.0.
2020-12-09 12:12:23 +01:00
zimoun
a55b1622c5
gnu: r-ruvseq: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.24.0.
2020-12-09 12:12:23 +01:00
zimoun
874a774fcc
gnu: r-dnabarcodes: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.20.0.
2020-12-09 12:12:22 +01:00
zimoun
41d6b41feb
gnu: r-inspect: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.20.0.
2020-12-09 12:12:22 +01:00
zimoun
1c9bdfcf3c
gnu: r-plgem: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.62.0.
2020-12-09 12:12:22 +01:00
zimoun
0ef40b23b6
gnu: r-rots: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-rots): Update to 1.18.0.
2020-12-09 12:12:22 +01:00
zimoun
3dab4570fa
gnu: r-glimma: Update to 2.0.0.
...
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.0.0.
2020-12-09 12:12:22 +01:00
zimoun
c97bcfbd78
gnu: r-goseq: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.42.0.
2020-12-09 12:12:22 +01:00
zimoun
d27dfbf7f9
gnu: r-ctc: Update to 1.64.0.
...
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.64.0.
2020-12-09 12:12:22 +01:00
zimoun
3813c9fe56
gnu: r-riboseqr: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.24.0.
2020-12-09 12:12:22 +01:00
zimoun
03b655c524
gnu: r-riboprofiling: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.20.0.
2020-12-09 12:12:22 +01:00
zimoun
63572b0c12
gnu: r-bayseq: Update to 2.24.0.
...
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.24.0.
2020-12-09 12:12:22 +01:00
zimoun
3b6484097c
gnu: r-qdnaseq: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.26.0.
2020-12-09 12:12:22 +01:00
zimoun
724000356e
gnu: r-cghcall: Update to 2.52.0.
...
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.52.0.
2020-12-09 12:12:22 +01:00
zimoun
ee052d05f1
gnu: r-cghbase: Update to 1.50.0.
...
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.50.0.
2020-12-09 12:12:22 +01:00
zimoun
6e6c627230
gnu: r-marray: Update to 1.68.0.
...
* gnu/packages/bioconductor.scm (r-marray): Update to 1.68.0.
2020-12-09 12:12:22 +01:00
zimoun
d068d96743
gnu: r-chippeakanno: Update to 3.24.0.
...
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.24.0.
2020-12-09 12:12:21 +01:00
zimoun
f519b4dc01
gnu: r-graph: Update to 1.68.0.
...
* gnu/packages/bioconductor.scm (r-graph): Update to 1.68.0.
2020-12-09 12:12:21 +01:00
zimoun
1e6920c521
gnu: r-multtest: Update to 2.46.0.
...
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.46.0.
2020-12-09 12:12:21 +01:00
Roel Janssen
341ebaaa01
gnu: r-diffbind: Update to 3.0.7.
...
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.7.
[propagated-inputs]: Add r-apeglm, r-ashr, and r-greylistchip; remove r-edger.
2020-12-09 12:12:21 +01:00
Roel Janssen
6e396c4bff
gnu: Add r-greylistchip.
...
* gnu/packages/bioconductor.scm (r-greylistchip): New variable.
2020-12-09 12:12:21 +01:00
Roel Janssen
c84762c446
gnu: Add r-ashr.
...
* gnu/packages/cran.scm (r-ashr): New variable.
2020-12-09 12:12:21 +01:00
Roel Janssen
755d16a3b0
gnu: Add r-mixsqp.
...
* gnu/packages/cran.scm (r-mixsqp): New variable.
2020-12-09 12:12:21 +01:00
Roel Janssen
deda2319f7
gnu: Add r-etrunct.
...
* gnu/packages/cran.scm (r-etrunct): New variable.
2020-12-09 12:12:21 +01:00
Roel Janssen
a7f4a8b4d0
gnu: Add r-invgamma.
...
* gnu/packages/cran.scm (r-invgamma): New variable.
2020-12-09 12:12:21 +01:00
Roel Janssen
3b399e514f
gnu: Add r-apeglm.
...
* gnu/packages/bioconductor.scm (r-apeglm): New variable.
2020-12-09 12:12:21 +01:00
Roel Janssen
a0df9b93ef
gnu: Add r-rcppnumerical.
...
* gnu/packages/bioconductor.scm (r-rcppnumerical): New variable.
2020-12-09 12:12:21 +01:00
zimoun
e9b60a2901
gnu: r-qvalue: Update to 2.22.0.
...
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.22.0.
2020-12-09 12:12:21 +01:00
zimoun
9af6fdf861
gnu: r-oligo: Update to 1.54.0.
...
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.54.0.
2020-12-09 12:12:21 +01:00
zimoun
464df5ccbb
gnu: r-oligoclasses: Update to 1.52.0.
...
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.52.0.
2020-12-09 12:12:21 +01:00
zimoun
d72c4c98c8
gnu: r-geneplotter: Update to 1.68.0.
...
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.68.0.
2020-12-09 12:12:20 +01:00
zimoun
c03c76344e
gnu: r-reportingtools: Update to 2.30.0.
...
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.30.0.
2020-12-09 12:12:20 +01:00
zimoun
d1ff3604b7
gnu: r-regioner: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.22.0.
2020-12-09 12:12:20 +01:00
zimoun
fa7578b32f
gnu: r-hpar: Update to 1.32.1.
...
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.32.1.
2020-12-09 12:12:20 +01:00
zimoun
7d56302332
gnu: r-annotate: Update to 1.68.0.
...
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.68.0.
[propagated-inputs]: Remove 'r-rcurl', add 'r-httr'.
2020-12-09 12:12:20 +01:00
zimoun
8e6a2c328f
gnu: r-affxparser: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.62.0.
2020-12-09 12:12:20 +01:00
zimoun
a92219b45f
gnu: r-affycoretools: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.62.0.
2020-12-09 12:12:20 +01:00
zimoun
3e82f9ccaf
gnu: r-affycontam: Update to 1.48.0.
...
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.48.0.
2020-12-09 12:12:20 +01:00
zimoun
fa2d16cc27
gnu: r-affycompatible: Update to 1.50.0.
...
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.50.0.
2020-12-09 12:12:20 +01:00
zimoun
c472549f67
gnu: r-affycomp: Update to 1.66.0.
...
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.66.0.
2020-12-09 12:12:20 +01:00
zimoun
aa311eaa74
gnu: r-biocgenerics: Update to 0.36.0.
...
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.36.0.
2020-12-09 12:12:20 +01:00
zimoun
70ab99096d
gnu: r-biocversion: Update to 3.12.0.
...
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.12.0.
2020-12-09 12:12:20 +01:00
zimoun
a3e2e53837
gnu: r-cummerbund: Update to 2.32.0.
...
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.32.0.
2020-12-09 12:12:20 +01:00
zimoun
5ef637ddc7
gnu: r-coverageview: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.28.0.
2020-12-09 12:12:20 +01:00
zimoun
25f4e6520e
gnu: r-ideoviz: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.26.0.
2020-12-09 12:12:20 +01:00
Efraim Flashner
533935ccf7
services: science.scm: Add missing copyright headers.
...
This module was always supposed to have the GPL3 header in place.
Follow-up to 8f19e63f76
.
* gnu/services/science.scm: Add Copyright headers.
2020-12-09 12:55:02 +02:00
Guillaume Le Vaillant
53c480006b
gnu: monero-gui: Update to 0.17.1.6.
...
* gnu/packages/finance.scm (monero-gui): Update to 0.17.1.6.
2020-12-09 11:34:25 +01:00
Guillaume Le Vaillant
5560bd7b6b
gnu: monero: Update to 0.17.1.6.
...
* gnu/packages/finance.scm (monero): Update to 0.17.1.6.
2020-12-09 11:34:25 +01:00
elaexuotee@wilsonb.com
8e2aad26ae
gnu: Add lemonbar-xft.
...
* gnu/packages/wm.scm (lemonbar-xft): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-09 09:10:33 +00:00
Ryan Prior
9941036559
gnu: Add go-github-com-aws-sdk.
...
* gnu/packages/golang.scm (go-github-com-aws-sdk): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-12-09 09:45:35 +02:00
Ryan Prior
016501aec6
gnu: Add go-github-com-jmespath-go-jmespath.
...
* gnu/packages/golang.scm (go-github-com-jmespath-go-jmespath): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-12-09 09:45:35 +02:00
Ryan Prior
f7c2896e52
gnu: Add go-github-com-go-sql-driver-mysql.
...
* gnu/packages/golang.scm (go-github-com-go-sql-driver-mysql): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-12-09 09:45:31 +02:00
Leo Famulari
2b0185a74b
gnu: linux-libre 4.14: Update to 4.14.211.
...
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.211.
(linux-libre-4.14-pristine-source): Update hash.
2020-12-09 01:08:15 -05:00
Leo Famulari
a2eae5ec4a
gnu: linux-libre 4.19: Update to 4.19.162.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.162.
(linux-libre-4.19-pristine-source): Update hash.
2020-12-09 01:08:15 -05:00
Leo Famulari
66b1b55148
gnu: linux-libre 5.4: Update to 5.4.82.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.82.
(linux-libre-5.4-pristine-source): Update hash.
2020-12-09 01:08:14 -05:00
Leo Famulari
54f777ca4e
gnu: linux-libre: Update to 5.9.13.
...
* gnu/packages/linux.scm (linux-libre-5.9-version): Update to 5.9.13.
(linux-libre-5.9-pristine-source): Update hash.
2020-12-09 01:08:09 -05:00
Leo Famulari
02b21f35cc
gnu: OpenSSL: Update to 1.1.1i [fixes CVE-2020-1971].
...
* gnu/packages/tls.scm (openssl)[replacement]: Update replacement to 1.1.1i
(openssl-1.1.1g): Replace with ...
(openssl-1.1.1i): ... new variable.
2020-12-08 19:48:09 -05:00
Ludovic Courtès
456421fc0f
gnu: guix: Update to 799f066
.
...
* gnu/packages/package-management.scm (guix): Update to 799f066
.
2020-12-08 23:38:04 +01:00
Ludovic Courtès
4a98735297
gnu: autotools: Add version 2.70.
...
* gnu/packages/autotools.scm (autoconf): Rename to...
(autoconf-2.69): ... this.
(autoconf): Define as an alias for AUTOCONF-2.69.
(autoconf-2.70): New variable.
2020-12-08 22:28:00 +01:00
Vincent Legoll
20e5658c04
gnu: ocaml-menhir: Update to 20200211.
...
* gnu/packages/ocaml.scm (ocaml-menhir): Update to 20200211.
[build-system]: Switch from gnu to dune.
[arguments]: Remove phases and make-flags.
[native-inputs]: Remove field.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 20:18:11 +00:00
Efraim Flashner
2d1a621b8d
gnu: mruby: Update to 2.1.2.
...
* gnu/packages/ruby.scm (mruby): Update to 2.1.2.
2020-12-08 22:09:30 +02:00
L p R n d n
8a55a3994c
gnu: Add mypaint.
...
* gnu/packages/image.scm (mypaint): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 20:06:38 +00:00
Christopher Baines
c9c3569ad9
gnu: libmypaint: Update to 1.6.1.
...
Needed by mypaint@2.0.1.
* gnu/packages/gimp.scm (libmypaint): Update to 1.6.1.
2020-12-08 20:06:34 +00:00
Leo Famulari
e1d3b07ffc
gnu: isync: Use OpenSSL 1.1.
...
* gnu/packages/mail.scm (isync)[inputs]: Replace openssl-1.0 with openssl.
2020-12-08 13:25:27 -05:00
Efraim Flashner
adbb62f16e
gnu: fcitx5-material-color-theme: Add source file-name.
...
* gnu/packages/fcitx5.scm (fcitx5-material-color-theme)[source]: Add
file-name field.
2020-12-08 18:14:31 +02:00
Zhu Zihao
af34f757ce
gnu: Add fcitx5-material-color-theme.
...
* gnu/packages/fcitx5.scm (fcitx5-material-color-theme): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
Zhu Zihao
ac1c7530d8
gnu: Add fcitx5-configtool.
...
* gnu/packages/fcitx5.scm (fcitx5-configtool): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
Zhu Zihao
9a23698ecd
gnu: Add fcitx5-chinese-addons.
...
* gnu/packages/fcitx5.scm (fcitx5-chinese-addons): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
Zhu Zihao
d4aca38b50
gnu: Add fcitx5-gtk.
...
* gnu/packages/fcitx5.scm (fcitx5-gtk): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
Zhu Zihao
4394d3721a
gnu: Add fcitx5-qt.
...
* gnu/packages/fcitx5.scm (fcitx5-qt): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
Zhu Zihao
69d3419ca3
gnu: Add libime.
...
* gnu/packages/fcitx5.scm (libime): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
Zhu Zihao
2d07803be8
gnu: Add fcitx5-lua.
...
* gnu/packages/fcitx5.scm (fcitx5-lua): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
Zhu Zihao
aa5cfb39a5
gnu: Add fcitx5.
...
* gnu/packages/fcitx5.scm (fcitx5): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
Zhu Zihao
ad6cf3d4ad
gnu: Add xcb-imdkit.
...
* gnu/packages/fcitx5.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
Mathieu Othacehe
770fb659a6
services: cuirass: Add queue-size option.
...
* gnu/services/cuirass.scm (<cuirass-configuration>): Add "queue-size" field.
(cuirass-shepherd-service): Honor it.
* doc/guix.texi (Continuous Integration): Document it.
2020-12-08 11:56:26 +01:00
Mathieu Othacehe
2dd4f389c7
gnu: cuirass: Update to 0.0.1-56.697fa14.
...
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-56.697fa14.
2020-12-08 11:48:53 +01:00
Ryan Prior
ab58b2cc32
gnu: Add cjson.
...
* gnu/packages/javascript.scm (cjson): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 09:26:46 +00:00
Ryan Prior
b5c51ae086
gnu: Add tiny-bignum.
...
* gnu/packages/maths.scm (tiny-bignum): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 09:21:50 +00:00
Martin Becze
2d8deaa06e
gnu: trezord: Update to 2.0.30.
...
* gnu/packages/finance.scm (trezord): Update to 2.0.30.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 08:50:43 +00:00
Martin Becze
2d9acf675a
gnu: Add go-gopkg-in-natefinch-lumberjack.v2.
...
* gnu/packages/golang.scm (go-gopkg-in-natefinch-lumberjack.v2): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 08:50:43 +00:00
Martin Becze
2d0716e081
gnu: Add go-github-com-gorilla-csrf.
...
* gnu/packages/golang.scm (go-github-com-gorilla-csrf): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 08:37:49 +00:00
Martin Becze
4368b9b2d7
gnu: Add go-github-com-gorilla-securecookie.
...
* gnu/packages/golang.scm (go-github-com-gorilla-securecookie): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 08:37:49 +00:00
Martin Becze
d2a42cee0b
gnu: Add go-github-com-gorilla-handlers.
...
* gnu/packages/golang.scm (go-github-com-gorilla-handlers): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 08:37:49 +00:00
Martin Becze
33504d4d70
gnu: Add go-github-com-felixge-httpsnoop.
...
* gnu/packages/golang.scm (go-github-com-felixge-httpsnoop): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 08:37:44 +00:00
Martin Becze
836428c793
gnu: go-github-com-gorilla-mux: Update to 1.8.0.
...
* gnu/packages/golang.scm (go-github-com-gorilla-mux): Update to 1.8.0.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 08:31:29 +00:00
Tobias Geerinckx-Rice
53cd301b08
gnu: scummvm: Update source URL.
...
* gnu/packages/emulators.scm (scummvm)[source]: Use HTTPS & new
subdomain.
Reported by Matthew Brooks <matthewfbrooks@mailbox.org>.
2020-12-08 08:46:54 +01:00
Michael Rohleder
dcf8dd2be5
gnu: gita: Install shell completions.
...
* gnu/packages/version-control.scm (gita)[arguments]: Add phase
install-shell-completions.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-12-08 08:09:21 +03:00
Ryan Desfosses
b5e52d8225
gnu: Add emacs-burly.
...
* gnu/packages/emacs-xyz.scm (emacs-burly): New variable.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-12-08 07:59:24 +03:00
Ryan Desfosses
fedf7d5721
gnu: Add emacs-map.
...
* gnu/packages/emacs-xyz.scm (emacs-map): New variable.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-12-08 07:59:22 +03:00
Leo Prikler
403dda2e66
gnu: shadowsocks: Build against openssl.
...
This patch allows shadowsocks to be used without supplying libopenssl in its
configuration. See also https://unix.stackexchange.com/questions/623324/ .
* gnu/packages/networking.scm (shadowsocks)[inputs]: Add openssl.
[#:phases]: Add patch-crypto-paths.
Signed-off-by: Marius Bakke <marius@gnu.org>
2020-12-08 00:45:56 +01:00
Marius Bakke
adf0edadef
gnu: qoauth: Minor cosmetic improvements.
...
* gnu/packages/web.scm (qoauth)[arguments]: Add #:tests?. Don't delete
'check' phase. Override 'configure' instead of adding new phase.
2020-12-08 00:45:56 +01:00
Marius Bakke
627b70e3ac
gnu: qoauth: Fix build failure.
...
Fixes <https://bugs.gnu.org/45031 >.
Reported by Distopico <distopico@riseup.net>.
* gnu/packages/web.scm (qoauth)[arguments]: Add phase
'adjust-mkspecs-directory'.
2020-12-08 00:45:56 +01:00
Marius Bakke
63be1a7dae
gnu: qca: Correct license.
...
* gnu/packages/kde.scm (qca)[license]: Change from LGPL2.1 to LGPL2.1+.
2020-12-08 00:45:56 +01:00
Oleg Pykhalov
608113c083
gnu: Add gita.
...
* gnu/packages/version-control.scm (gita): New variable.
2020-12-08 01:49:38 +03:00
Tobias Geerinckx-Rice
ac3af8f7ed
gnu: imapfilter: Update to 2.7.5.
...
* gnu/packages/mail.scm (imapfilter): Update to 2.7.5.
2020-12-07 23:44:36 +01:00
Nicolas Goaziou
f6b1288913
gnu: grammalecte: Update to 2.0.0.
...
* gnu/packages/dictionaries.scm (grammalecte): Update to 2.0.0.
2020-12-07 22:43:57 +01:00
Kei Kebreau
906fc9116f
gnu: Add glmark2.
...
* gnu/packages/gl.scm (glmark2): New variable.
2020-12-07 16:08:42 -05:00
Michael Rohleder
476f19f57a
gnu: xfce4-whiskermenu-plugin: Fix installed shell script.
...
* gnu/packages/xfce.scm (xfce4-whiskermenu-plugin): Fix installed shell script.
[arguments]: Add phase fix-shell-script to substitute paths to xfce4-panel and
gettext.
[inputs]: Add gettext-minimal.
Co-authored-by: Kei Kebreau <kkebreau@posteo.net>
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2020-12-07 16:08:41 -05:00
Tobias Geerinckx-Rice
d2ff5931ab
gnu: bombadillo: Update to 2.3.3.
...
* gnu/packages/web-browsers.scm (bombadillo): Update to 2.3.3.
2020-12-07 21:52:22 +01:00
Tobias Geerinckx-Rice
df11cf2f66
gnu: qutebrowser: Update to 1.14.1.
...
* gnu/packages/web-browsers.scm (qutebrowser): Update to 1.14.1.
2020-12-07 21:52:22 +01:00
Tobias Geerinckx-Rice
5fb085da6b
gnu: yapet: Omit duplicate licence files.
...
* gnu/packages/password-utils.scm (yapet)[arguments]: Set a better --docdir.
2020-12-07 21:52:22 +01:00
Tobias Geerinckx-Rice
1385ac55a4
gnu: yapet: Update to 2.5.
...
* gnu/packages/password-utils.scm (yapet): Update to 2.5.
2020-12-07 21:52:22 +01:00
Tobias Geerinckx-Rice
8c0d6a533a
gnu: feh: Update to 3.6.1.
...
* gnu/packages/image-viewers.scm (feh): Update to 3.6.1.
2020-12-07 21:52:22 +01:00
Tobias Geerinckx-Rice
36e80e32f3
gnu: libmanette: Update to 0.2.6.
...
* gnu/packages/games.scm (libmanette): Update to 0.2.6.
2020-12-07 21:52:22 +01:00
Tobias Geerinckx-Rice
88a26bfd52
gnu: thermald: Update to 2.4.1.
...
* gnu/packages/admin.scm (thermald): Update to 2.4.1.
2020-12-07 21:52:22 +01:00
Nicolas Goaziou
08d8c2d3c0
gnu: emacs-moody: Update to 0.5.4.
...
* gnu/packages/emacs-xyz.scm (emacs-moody): Update to 0.5.4.
2020-12-07 17:02:10 +01:00
André Alexandre Gomes
985570ad30
gnu: Add emacs-modus-themes.
...
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): New variable.
(emacs-modus-operandi-theme, emacs-modus-vivendi-theme): Deprecate package in
favor of emacs-modus-themes.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-07 16:27:03 +01:00
Ludovic Courtès
aecd2a13cb
services: openssh: Warn about 'password-authentication?' default.
...
Fixes <https://bugs.gnu.org/44808 >.
Reported by Christopher Lemmer Webber <cwebber@dustycloud.org>.
* gnu/services/ssh.scm (true-but-soon-false): New procedure.
(<openssh-configuration>)[password-authentication?]: Change default to
'true-but-soon-false'.
* gnu/installer/services.scm (%system-services): Explicitly set
'password-authentication?' to #f.
2020-12-07 12:48:26 +01:00
Ludovic Courtès
859b362f81
services: hurd-vm: Avoid circular dependency with (gnu system images hurd).
...
* gnu/services/virtualization.scm (hurd-vm-disk-image): Use
'lookup-image-type-by-name' instead of referring to 'hurd-disk-image'
from (gnu system images hurd).
2020-12-07 12:48:26 +01:00
Efraim Flashner
27cf238744
Revert "gnu: vim: Run more tests."
...
This reverts commit 17a53aec7a
.
This breaks building vim on ARM architectures.
2020-12-07 12:48:07 +02:00
Efraim Flashner
3832704aff
gnu: minimap2: Fix build on aarch64-linux.
...
* gnu/packages/bioinformatics.scm (minimap2)[arguments]: Adjust
configure-flags to be better per-architecture.
[source]: Add patch.
* gnu/packages/patches/minimap2-aarch64-support.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2020-12-07 12:48:07 +02:00
Efraim Flashner
f48cd014f3
gnu: minimap2: Prepare for cross compilation.
...
* gnu/packages/bioinformatics.scm (minimap2)[arguments]: Use
cc-for-target.
2020-12-07 12:48:01 +02:00
Michael Rohleder
65555198b2
gnu: emacs-with-editor: Update to 3.0.2.
...
* gnu/packages/emacs-xyz.scm (emacs-with-editor): Update to 3.0.2.
[propagated-inputs]: Changed emacs-dash to emacs-async.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-07 11:40:47 +01:00
Mathieu Othacehe
e461d3b750
service: Add shepherd discover action.
...
* gnu/services/base.scm (shepherd-discover-action): New procedure,
(guix-shepherd-service)[<actions>]: add it,
[<start>]: honor it.
* doc/guix.texi (Invoking guix-daemon): Document it.
2020-12-07 10:39:21 +01:00
Christopher Baines
92f7c11af2
prometheus-node-exporter: Support extra options.
...
There are plenty of options supported that the Guix configuration record
doesn't help you with, so add this field to allow users to do their own thing.
* gnu/services/monitoring.scm (<prometheus-node-exporter-configuration>): Add
extra-options field.
(prometheus-node-exporter-shepherd-service): Handle the extra options.
* doc/guix.texi (Prometheus Node Exporter Service): Document this.
2020-12-07 09:08:33 +00:00
Christopher Baines
fd14385581
prometheus-node-exporter: Enable the textfile collector.
...
* gnu/services/monitoring.scm (<prometheus-node-exporter-configuration>): Add
textfile-directory.
(prometheus-node-exporter-textfile-directory,
prometheus-node-exporter-activation): New procedures.
(prometheus-node-exporter-shepherd-service): Pass
--collector.textfile.directoryto the service.
(prometheus-node-exporter-service-type): Extend the activation service type.
* doc/guix.texi (Prometheus Node Exporter Service): Document.
2020-12-07 09:08:20 +00:00
Christopher Baines
fa0975ad71
services: prometheus-node-exporter: Use a log file.
...
This makes the logs easier to find and read.
* gnu/services/monitoring.scm (prometheus-node-exporter-shepherd-service):
Pass #:log-file to make-forkexec-constructor.
2020-12-07 09:08:09 +00:00
Christopher Baines
6574298e4e
prometheus-node-exporter: Add user and group.
...
So it doesn't run as root, and because this will help with the textfile
exporter.
* gnu/services/monitoring.scm (%prometheus-node-exporter-accounts): New
variable.
(prometheus-node-exporter-shepherd-service): Use the relevant user and group.
(prometheus-node-exporter-service-type): Extend the account service type.
2020-12-07 09:07:54 +00:00
Christopher Baines
502cb3f8a1
services: prometheus-node-exporter: Neaten up.
...
Add relevant exports, as well as a comment to better indicate where the
relevant code starts.
* gnu/services/monitoring.scm (prometheus-node-exporter-service-type):
Capitalise Prometheus.
2020-12-07 09:07:13 +00:00
Antoine Côté
928bedcab7
gnu: rav1e: Update to 0.3.4.
...
* gnu/packages/video.scm (rav1e): Update to 0.3.4.
[arguments]: In cargo-inputs replace rust-aom-sys-0.1 with 0.2,
rust-nasm-rs-0.1 with 0.2.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-07 09:27:27 +01:00
Antoine Côté
b536f3bbd9
gnu: Add rust-nasm-rs-0.2.
...
* gnu/packages/crate-io.scm (rust-nasm-rs-0.2): New variable.
(rust-nasm-rs-0.1): Inherit from rust-nasm-rs-0.2.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-07 09:27:15 +01:00
Antoine Côté
cbd33c0da1
gnu: Add rust-aom-sys-0.2.
...
* gnu/packages/crates-graphics.scm (rust-aom-sys-0.2): New variable.
(rust-aom-sys-0.1): Inherit from rust-aom-sys-0.2.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-07 09:27:04 +01:00
Joseph LaFreniere
f15cc2f4a2
gnu: Add emacs-counsel-jq.
...
* gnu/packages/emacs-xyz.scm (emacs-counsel-jq): New variable.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-12-07 10:52:47 +03:00
Vagrant Cascadian
c8ea8516d0
gnu: diffoscope: Update to 162.
...
* gnu/packages/diffoscope (diffoscope): Update to 162.
2020-12-06 19:28:56 -08:00
Giacomo Leidi
0c86b24c41
gnu: Add hledger-web.
...
* gnu/packages/finance.scm (hledger-web): New variable.
Signed-off-by: Timothy Sample <samplet@ngyro.com>
2020-12-06 21:35:41 -05:00
Giacomo Leidi
897f47bc6a
gnu: Add ghc-wai-cors.
...
* gnu/packages/haskell-web.scm (ghc-wai-cors): New variable.
Signed-off-by: Timothy Sample <samplet@ngyro.com>
2020-12-06 21:35:35 -05:00
Giacomo Leidi
36017770f7
gnu: Add ghc-wai-handler-launch.
...
* gnu/packages/haskell-web.scm (ghc-wai-handler-launch): New variable.
Signed-off-by: Timothy Sample <samplet@ngyro.com>
2020-12-06 21:35:21 -05:00
Giacomo Leidi
90eae236aa
gnu: Add ghc-yesod-static.
...
* gnu/packages/haskell-web.scm (ghc-yesod-static): New variable.
Signed-off-by: Timothy Sample <samplet@ngyro.com>
2020-12-06 21:35:13 -05:00
Giacomo Leidi
8bbb759c83
gnu: Add ghc-hjsmin.
...
* gnu/packages/haskell-web.scm (ghc-hjsmin): New variable.
Signed-off-by: Timothy Sample <samplet@ngyro.com>
2020-12-06 21:35:05 -05:00
Giacomo Leidi
4cb7802121
gnu: Add ghc-cryptonite-conduit.
...
* gnu/packages/haskell-crypto.scm (ghc-cryptonite-conduit): New variable.
Signed-off-by: Timothy Sample <samplet@ngyro.com>
2020-12-06 21:34:57 -05:00
Giacomo Leidi
fd076aefcd
gnu: Add ghc-wai-app-static.
...
* gnu/packages/haskell-web.scm (ghc-wai-app-static): New variable.
Signed-off-by: Timothy Sample <samplet@ngyro.com>
2020-12-06 21:34:46 -05:00
Giacomo Leidi
2e77bb473b
gnu: Add ghc-yesod-test.
...
* gnu/packages/haskell-web.scm (ghc-yesod-test): New variable.
Signed-off-by: Timothy Sample <samplet@ngyro.com>
2020-12-06 21:34:37 -05:00
Giacomo Leidi
4ad5ce4f78
gnu: ghc-yesod-core: Update to 1.6.17.2.
...
* gnu/packages/haskell-web.scm (ghc-yesod-core): Update to 1.6.17.2.
Signed-off-by: Timothy Sample <samplet@ngyro.com>
2020-12-06 21:34:24 -05:00
Brett Gilio
1db54324b2
gnu: python-transient: Update to 0.12.
...
* gnu/packages/virtualization.scm (python-transient): Update to 0.12.
2020-12-06 18:08:30 -06:00
Leo Famulari
8f805657b9
gnu: Add the Glimpse Image Editor.
...
* gnu/packages/gimp.scm (glimpse): New variable.
2020-12-06 18:40:42 -05:00
Tobias Geerinckx-Rice
c7fcd248c2
gnu: zabbix-agentd: Update to 5.2.2.
...
* gnu/packages/monitoring.scm (zabbix-agentd): Update to 5.2.2.
2020-12-07 00:38:44 +01:00
Tobias Geerinckx-Rice
4a6cc1bbb9
gnu: mutt: Update to 2.0.3.
...
* gnu/packages/mail.scm (mutt): Update to 2.0.3.
2020-12-07 00:38:43 +01:00
Tobias Geerinckx-Rice
c73b1257fc
gnu: youtube-dl: Update to 2020.12.07.
...
* gnu/packages/video.scm (youtube-dl): Update to 2020.12.07.
2020-12-07 00:38:42 +01:00
Tobias Geerinckx-Rice
ac50633c15
gnu: hplip: Update to 3.20.11.
...
* gnu/packages/cups.scm (hplip): Update to 3.20.11.
[source]: Remove upstreamed patch.
* gnu/packages/patches/hplip-fix-bug-1898438.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-12-06 23:50:44 +01:00
Tobias Geerinckx-Rice
a79e05f9e8
gnu: libopenmpt: Update to 0.5.4.
...
* gnu/packages/audio.scm (libopenmpt): Update to 0.5.4.
2020-12-06 23:50:44 +01:00
Tobias Geerinckx-Rice
c24d1f2e6f
gnu: nsd: Update to 4.3.4.
...
* gnu/packages/dns.scm (nsd): Update to 4.3.4.
2020-12-06 23:50:43 +01:00
Tobias Geerinckx-Rice
71efb620cb
gnu: ropgadget: Update to 6.4.
...
* gnu/packages/cybersecurity.scm (ropgadget): Update to 6.4.
2020-12-06 23:50:43 +01:00
Tobias Geerinckx-Rice
6a84fddcaa
gnu: pam-mount: Update to 2.17.
...
* gnu/packages/admin.scm (pam-mount): Update to 2.17.
[source]: Remove upstreamed patch.
* gnu/packages/patches/pam-mount-luks2-support.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-12-06 23:50:43 +01:00
Tobias Geerinckx-Rice
9b5ed03969
gnu: fio: Update to 3.25.
...
* gnu/packages/benchmark.scm (fio): Update to 3.25.
2020-12-06 23:50:43 +01:00
Ryan Prior
6374a25357
gnu: esbuild: Update to 0.8.19.
...
* gnu/packages/web.scm (esbuild): Update to 0.8.19.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-12-06 23:19:15 +01:00
Ludovic Courtès
ce3b5e5a8d
services: mpd: Make /var/run/mpd/USER user-owned.
...
Fixes <https://bugs.gnu.org/44820 >.
Reported by Simon <lists@netpanic.org>.
This is a followup to bb124f6e9c
.
* gnu/services/audio.scm (mpd-service-activation): Chown the parent of
DIRECTORY as well.
2020-12-06 23:18:08 +01:00
Ekaitz Zarraga
383f087cd7
gnu: freecad: Update to 0.18.5
...
* gnu/packages/engineering.scm (freecad): Update to 0.18.5
Signed-off-by: Marius Bakke <marius@gnu.org>
2020-12-06 22:28:10 +01:00
Ekaitz Zarraga
50c24bbd4f
gnu: freecad: Fix compilation flags.
...
* gnu/packages/engineering.scm (freecad)[arguments]: Set correct
search paths in compilation flags. Fixes <https://bugs.gnu.org/43448 >.
Signed-off-by: Marius Bakke <marius@gnu.org>
2020-12-06 22:28:10 +01:00
Christopher Baines
bca3220b60
gnu: guix-build-coordinator: Update to 0-10.79e28fb.
...
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-10.79e28fb.
2020-12-06 21:09:42 +00:00
Christopher Baines
eb0b29f13d
gnu: guix-build-coordinator: Support cross-compilation.
...
Due to fibers not supporting the Hurd yet, the coordinator itself won't work,
but the agent should.
* gnu/packages/package-management.scm (guix-build-coordinator)[inputs]: Don't
include sqitch if building for the hurd.
[propagated-inputs]: Don't include guile-fibers if building for the hurd.
2020-12-06 21:09:42 +00:00
Christopher Baines
7306c67912
gnu: guile-lib: Support cross-compilation.
...
* gnu/packages/guile-xyz.scm (guile-lib)[native-inputs]: Add guile-3.0.
(guile2.0-lib, guile2.2-lib)[native-inputs]: Explicitly specifiy pkg-config.
2020-12-06 21:09:41 +00:00
Marius Bakke
329fa5bdbb
Revert "linux-container: Correct test for unprivileged user namespace support."
...
This broke 'guix environment --container' on non-Debian distributions.
Fixes <https://bugs.gnu.org/45066 >. Reported by luhux <luhux@outlook.com>.
This reverts commit 8bc5ca5160
.
2020-12-06 21:55:18 +01:00
Marius Bakke
3f35b09e8d
gnu: Add foot.
...
* gnu/packages/terminals.scm (foot): New public variable.
2020-12-06 18:30:12 +01:00
Marius Bakke
25e08f32c1
gnu: Add fcft.
...
* gnu/packages/fontutils.scm (fcft): New public variable.
2020-12-06 18:30:12 +01:00
Marius Bakke
0d59aecf63
gnu: Add tllist.
...
* gnu/packages/datastructures.scm (tllist): New public variable.
2020-12-06 18:30:12 +01:00
Marius Bakke
0c68fff5af
gnu: Sort module imports in (gnu packages fontutils).
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* gnu/packages/fontutils.scm: Sort (gnu ...) module imports.
2020-12-06 18:30:12 +01:00
Tobias Geerinckx-Rice
10defc57bf
linux-initrd: Add bcachefs support.
...
* gnu/system/linux-initrd.scm (file-system-packages): Add
bcachefs-tools/static.
(file-system-type-modules): Add an entry for the "bcachefs" type and
module.
2020-12-06 16:11:43 +01:00
Tobias Geerinckx-Rice
23be018d4f
file-systems: Fix ‘bcachefs fsck’ exit value logic.
...
Bit 1 means the target device was mounted read-only whilst checking.
This should never happen in an initrd context but is not an error.
* gnu/build/file-systems.scm (check-bcachefs-file-system): Ignore status
bits that don't signal an error. Remove the 'reboot-required case.
2020-12-06 16:11:43 +01:00
Nicolas Goaziou
e8528f03f9
gnu: emacs-hyperbole: Condensate description.
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* gnu/packages/emacs-xyz.scm (emacs-hyperbole)[description]: Remove buzzwords.
Condensate information.
2020-12-06 15:42:45 +01:00
Michael Rohleder
dc60e1c71e
gnu: emacs-info-plus: Update to 0-3.29811ed.
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* gnu/packages/emacs-xyz.scm (emacs-info-plus): Update to 0-3.29811ed.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-06 15:34:46 +01:00
Nicolas Goaziou
ee00b7c3ec
gnu: bat: Fix build.
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* gnu/packages/rust-apps.scm (bat)[native-inputs]: Add pkg-config.
[inputs]: Add libgit2.
This is a followup to 063f6dfc37
.
2020-12-06 13:54:59 +01:00
Ricardo Wurmus
8bc7015e71
gnu: mumi: Use latest unreleased guile-email.
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* gnu/packages/mail.scm (mumi)[inputs]: Replace "guile-email" with
"guile-email-latest".
2020-12-06 12:43:53 +01:00
Ricardo Wurmus
8b3b1f34e6
gnu: Add guile-email-latest.
...
* gnu/packages/guile-xyz.scm (guile-email-latest): New variable.
2020-12-06 12:43:43 +01:00
Ryan Desfosses
d9d6203b7a
gnu: emacs-zenburn-theme: Update to 2.7.0.
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* gnu/packages/emacs-xyz.scm (emacs-zenburn-theme): Update to 2.7.0.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-06 12:21:32 +01:00
Ryan Desfosses
c1e7ec0243
gnu: emacs-emacsql-sqlite3: Update to 1.0.2.
...
* gnu/packages/emacs-xyz.scm (emacs-emacsql-sqlite3): Update to 1.0.2.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-06 12:17:31 +01:00
Ryan Desfosses
34734b9dfc
gnu: emacs-ebib: Update to 2.27.2.
...
* gnu/packages/emacs-xyz.scm (emacs-ebib): Update to 2.27.2.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-06 12:16:19 +01:00
Simon South
74e3c37ae0
gnu: knot-resolver: Move manual, examples to separate "doc" output
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* gnu/packages/dns.scm (knot-resolver)[outputs]: Add "doc" output.
[arguments]<phases>: Add "move-doc" phase, which moves the manual (in both
HTML and Info formats) and example configuration files to the "doc" output.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-06 18:35:12 +08:00
Simon South
4fcff59091
gnu: knot-resolver: Update to 5.2.0.
...
* gnu/packages/dns.scm (knot-resolver): Update to 5.2.0.
[source]: Add patch from upstream commit to fix the internal map() function on
32-bit platforms.
[native-inputs]: Add texinfo to enable generating the manual in Info format.
[inputs]: Add nghttp2:lib to enable the new DNS-over-HTTPS implementation.
* gnu/packages/patches/knot-resolver-fix-map-command-on-32-bit.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-06 18:27:52 +08:00
Zhu Zihao
8e73bf754f
services: nix: Move nix.conf generation to etc-service-type.
...
/etc/nix/nix.conf is a static file doesn't need rebuild on every boot.
* gnu/services/nix.scm (nix-activation): Don't create /etc/nix/nix.conf.
(nix-service-etc): New function.
(nix-service-type): New service-extension "nix-service-etc" to etc-service-type.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-06 17:48:48 +08:00
Efraim Flashner
063f6dfc37
gnu: rust-libgit2-sys-0.12: Remove bundled library.
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* gnu/packages/crates-io.scm (rust-libgit2-sys-0.12)[source]: Add
snippet to remove bundled libgit2 source.
2020-12-06 09:22:11 +02:00
Brett Gilio
937bc58414
gnu: Add libexpected.
...
* gnu/packages/cpp.scm (libexpected): New variable.
* gnu/packages/patches/libexpected-nofetch.patch: Add patch.
* gnu/local.mk: Reference patch.
2020-12-05 21:10:59 -06:00
Nicolas Goaziou
635fefa049
gnu: bat: Remove duplicate Cargo input.
...
* gnu/packages/rust-apps.scm (bat)[arguments]: Remove duplicate rust-clap
Cargo input.
2020-12-05 21:57:35 +01:00
Christopher Baines
4b423e2b23
gnu: guix-build-coordinator: Update to 0-9.49c0596.
...
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-9.49c0596.
2020-12-05 19:14:20 +00:00
Christopher Baines
1e4266dbd8
gnu: guile-prometheus: Update to 0-3.2549c48.
...
* gnu/packages/guile-xyz.scm (guile-prometheus): Update to 0-3.2549c48.
2020-12-05 19:13:28 +00:00
EuAndreh
32a3367930
gnu: Add diff-so-fancy.
...
* gnu/packages/version-control.scm (diff-so-fancy): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-12-05 12:55:34 -05:00
Eric Bavier
705af5403b
gnu: superlu-dist: Update to 6.4.0.
...
* gnu/packages/maths.scm (superlu-dist): Update to 6.4.0
[source]: Use git-fetch, as tarballs are no longer published.
* gnu/packages/patches/superlu-dist-awpm-grid.patch: Remove all but the first
hunk; they are unnecessary.
2020-12-05 11:14:56 -06:00
Eric Bavier
38dd27e866
gnu: combinatorial-blas: Adjust AWPM headers for library use.
...
Fixes use in latest versions of SuperLU_DIST. See
e.g. https://github.com/xiaoyeli/superlu_dist/issues/60
* gnu/packages/patches/combinatorial-blas-awpm.patch: Remove globals related
to performance measurement. Declare non-template function inline.
2020-12-05 11:14:55 -06:00
Eric Bavier
013cf93234
gnu: scotch: Update to 6.1.0
...
* gnu/packages/maths.scm (scotch): Update to 6.1.0.
2020-12-05 11:14:55 -06:00
Eric Bavier
c52f025684
gnu: python-yq: Fix texinfo markup.
...
* gnu/packages/python-xyz.scm (python-yq): Add missing `command`.
2020-12-05 11:14:47 -06:00
Marius Bakke
1cb91eb50f
gnu: ungoogled-chromium: Update to 87.0.4280.88-0.b78cb92 [security fixes].
...
* gnu/packages/chromium.scm (%chromium-version): Set to 87.0.4280.88.
(%ungoogled-revision): Set to b78cb927fa8beaee0ddfb4385277edb96444c40f.
(%ungoogled-origin): Update URL and hash.
(ungoogled-chromium): Update hash.
[arguments]: Fix inverted logic in max link jobs.
2020-12-05 18:06:53 +01:00
Nicolas Goaziou
4e811f5662
gnu: Add bat.
...
* gnu/packages/rust-apps.scm (bat): New variable.
2020-12-05 17:58:10 +01:00
Nicolas Goaziou
6f0b8eaa86
gnu: Add rust-git2-0.13.
...
* gnu/packages/crates-io.scm (rust-git2-0.13): New variable.
(rust-git2-0.11): Inherit from above.
2020-12-05 17:43:40 +01:00
Nicolas Goaziou
57c88ee947
gnu: Add rust-libgit2-sys-0.12.
...
* gnu/packages/crates-io.scm (rust-libgit2-sys-0.12): New variable.
(rust-libgit2-sys-0.10): Inherit from above.
2020-12-05 17:43:40 +01:00
Nicolas Goaziou
975b1586a4
gnu: Add rust-syntect-4.
...
* gnu/packages/crates-io.scm (rust-syntect-4): New variable.
(rust-syntect-3.3): Inherit from above.
2020-12-05 17:39:28 +01:00
Nicolas Goaziou
733c489bbd
gnu: Add rust-onig-6.
...
* gnu/packages/crates-io.scm (rust-onig-6): New variable.
(rust-onig-5.0): Inherit from above.
2020-12-05 17:39:27 +01:00
Nicolas Goaziou
e0c28005c3
gnu: Add rust-onig-sys-69.6.
...
* gnu/packages/crates-io.scm (rust-onig-sys-69.6): New variable.
(rust-onig-sys-69.2): Inherit from above.
2020-12-05 17:39:27 +01:00
Nicolas Goaziou
a027077814
gnu: Add rust-dirs-3.
...
* gnu/packages/crates-io.scm (rust-dirs-3): New variable.
(rust-dirs-2.0): Inherit from above.
2020-12-05 17:39:26 +01:00
Nicolas Goaziou
210406cb4f
gnu: Add rust-console-0.13.
...
* gnu/packages/crates-io.scm (rust-console-0.13): New variable.
(rust-console-0.11): Inherit from above.
2020-12-05 17:39:26 +01:00
Nicolas Goaziou
8faddefa03
gnu: Add rust-content-inspector-0.2.
...
* gnu/packages/crates-io.scm (rust-content-inspector-0.2): New variable.
2020-12-05 17:39:26 +01:00
Nicolas Goaziou
bbb25c9cc0
gnu: Add rust-path-abs-0.5.
...
* gnu/packages/crates-io.scm (rust-path-abs-0.5): New variable.
2020-12-05 17:39:25 +01:00
Nicolas Goaziou
42acc9582d
gnu: Add rust-semver-0.11.
...
* gnu/packages/crates-io.scm (rust-semver-0.11): New variable.
(rust-semver-0.10): Inherit from above.
2020-12-05 17:39:25 +01:00
Nicolas Goaziou
162ee32dd4
gnu: Add rust-semver-parser-0.10.
...
* gnu/packages/crates-io.scm (rust-semver-parser-0.10): New variable.
(rust-semver-parser-0.9): Inherit from above.
2020-12-05 17:39:24 +01:00
Nicolas Goaziou
7b81e7aa8e
gnu: Add rust-shell-words-1.
...
* gnu/packages/crates-io.scm (rust-shell-words-1): New variable.
(rust-shell-words-0.1): Inherit from above.
2020-12-05 17:39:24 +01:00
Nicolas Goaziou
00987a22fe
gnu: Add rust-fancy-regex-0.3.
...
* gnu/packages/crates-io.scm (rust-fancy-regex-0.3): New variable.
2020-12-05 17:39:23 +01:00
Nicolas Goaziou
9cc9123837
gnu: Add rust-wild-2.
...
* gnu/packages/crates-io.scm (rust-wild-2): New variable.
2020-12-05 17:20:55 +01:00
Nicolas Goaziou
e4800bb9a5
gnu: Add rust-plist-1.
...
* gnu/packages/crates-io.scm (rust-plist-1): New variable.
(rust-plist-0.4): Inherit from above.
2020-12-05 17:20:55 +01:00
Nicolas Goaziou
a715e17f76
gnu: rust-predicates-1: Update to 1.0.5.
...
* gnu/packages/crates-io.scm (rust-predicates-1): Update to 1.0.5.
[arguments]: Update rust-float-cmp version in Cargo inputs.
[description]: Write a full sentence.
2020-12-05 17:20:49 +01:00
Sharlatan Hellseher
cebfb29abb
gnu: Add zs3.
...
* gnu/packages/lisp-xyz.scm (cl-zs3, ecl-zs3, sbcl-zs3): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2020-12-05 16:01:19 +01:00
Sharlatan Hellseher
65d3fab53a
gnu: Add cl-log.
...
* gnu/packages/lisp-xyz.scm (cl-log, ecl-cl-log, sbcl-cl-log): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2020-12-05 16:01:19 +01:00
Guillaume Le Vaillant
4354dacede
gnu: sbcl: Simplify 'replace-asdf' phase.
...
* gnu/packages/lisp.scm (sbcl)[arguments]: Remove unused 'out' variable in
'replace-asdf' phase.
2020-12-05 16:00:58 +01:00
Guillaume Le Vaillant
f62982d96d
gnu: ecl: Simplify 'replace-asdf' phase.
...
* gnu/packages/lisp.scm (ecl)[arguments]: Remove unused 'out' variable in
'replace-asdf' phase.
2020-12-05 16:00:58 +01:00
Guillaume Le Vaillant
c32a7b3485
gnu: clisp: Use system ASDF instead of bundled one.
...
* gnu/packages/lisp.scm (clisp)[native-inputs]: Add cl-asdf.
[arguments]: Add 'replace-asdf' phase.
[native-search-paths]: Add XDG_CONFIG_DIRS and XDG_DATA_DIRS.
2020-12-05 16:00:58 +01:00
Guillaume Le Vaillant
623a98a9dc
gnu: ccl: Use system ASDF instead of bundled one.
...
* gnu/packages/lisp.scm (ccl)[native-inputs]: Add cl-asdf.
[arguments]: Add 'replace-asdf' phase.
[native-search-paths]: Add XDG_CONFIG_DIRS and XDG_DATA_DIRS.
2020-12-05 16:00:58 +01:00
Guillaume Le Vaillant
031fbebafe
gnu: cl-asdf: Improve priorities of configuration file search.
...
* gnu/packages/patches/cl-asdf-config-directories.patch: New file.
* gnu/local.mk (dist_PATCH_DATA): Add it.
* gnu/packages/lisp.scm (cl-asdf)[native-inputs]: Add it.
[arguments]: Apply the new patch.
Co-authored-by: Pierre Neidhardt <mail@ambrevar.xyz>
2020-12-05 16:00:57 +01:00
Nicolas Goaziou
1ab631d4c0
gnu: Add castor.
...
* gnu/packages/web.scm (castor): New variable.
2020-12-05 14:45:16 +01:00
Nicolas Goaziou
fa24775674
gnu: rust-native-tls-0.2: Update to 0.2.6.
...
* gnu/packages/crates-io.scm (rust-native-tls-0.2): Update to 0.2.6.
[arguments]: Update rust-security-framework-sys, and rust-security-framework
Cargo inputs. Update rust-hex Cargo development input.
2020-12-05 14:45:16 +01:00
Nicolas Goaziou
5f9d9d0411
gnu: Add rust-security-framework-2.
...
* gnu/packages/crates-io.scm (rust-security-framework-2): New variable.
(rust-security-framework-1): inherit from above.
2020-12-05 14:45:16 +01:00
Nicolas Goaziou
d4d4bf3b64
gnu: Add rust-security-framework-sys-2.
...
* gnu/packages/crates-io.scm (rust-security-framework-sys-2): New variable.
(rust-security-framework-sys-1): inherit from above.
2020-12-05 14:45:15 +01:00
Nicolas Goaziou
0b36bd01e4
gnu: Add rust-core-foundation-0.9.
...
* gnu/packages/crates-io.scm (rust-core-foundation-0.9): New variable.
(rust-core-foundation-0.7): inherit from above.
2020-12-05 14:45:15 +01:00
Nicolas Goaziou
b970c0ed93
gnu: Add rust-core-foundation-sys-0.8.
...
* gnu/packages/crates-io.scm (rust-core-foundation-sys-0.8): New variable.
(rust-core-foundation-sys-0.7): inherit from above.
2020-12-05 14:45:15 +01:00
Nicolas Goaziou
50e9f5600b
gnu: Add rust-gdk-0.13.
...
* gnu/packages/crates-gtk.scm (rust-gdk-0.13): New variable.
(rust-gdk-0.12): inherit from above.
2020-12-05 14:45:14 +01:00
Nicolas Goaziou
979e770cd0
gnu: Add rust-gtk-0.8.
...
* gnu/packages/crates-gtk.scm (rust-gtk-0.8): New variable.
2020-12-05 14:45:14 +01:00
Nicolas Goaziou
16597f2685
gnu: Add rust-gtk-sys-0.9.
...
* gnu/packages/crates-gtk.scm (rust-gtk-sys-0.9): New variable.
2020-12-05 14:45:14 +01:00
Nicolas Goaziou
81756b7fe2
gnu: Add rust-gdk-0.12.
...
* gnu/packages/crates-gtk.scm (rust-gdk-0.12): New variable.
2020-12-05 14:45:13 +01:00
Nicolas Goaziou
d283d54e48
gnu: Add rust-gdk-sys-0.9.
...
* gnu/packages/crates-gtk.scm (rust-gdk-sys-0.9): New variable.
2020-12-05 14:45:13 +01:00
Nicolas Goaziou
8b657f3ece
gnu: Add rust-gdk-pixbuf-0.9.
...
* gnu/packages/crates-gtk.scm (rust-gdk-pixbuf-0.9): New variable.
(rust-gdk-pixbuf-0.8): inherit from above.
2020-12-05 14:45:13 +01:00
Nicolas Goaziou
8bf089c436
gnu: Add rust-gdk-pixbuf-sys-0.10.
...
* gnu/packages/crates-gtk.scm (rust-gdk-pixbuf-sys-0.10): New variable.
(rust-gdk-pixbuf-sys-0.9): inherit from above.
2020-12-05 14:45:12 +01:00
Nicolas Goaziou
e878244d0a
gnu: Add rust-gio-0.9.
...
* gnu/packages/crates-gtk.scm (rust-gio-0.9): New variable.
(rust-gio-0.8): inherit from above.
2020-12-05 14:45:12 +01:00