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62689 Commits (fd247542215fbd10f28980f3d5255014b150e95a)

Author SHA1 Message Date
zimoun a4f4a55283
gnu: r-reactomepa: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.34.0.
2020-12-09 12:12:34 +01:00
zimoun 26224e09ae
gnu: r-graphite: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.36.0.
2020-12-09 12:12:34 +01:00
zimoun 95e30d8f6e
gnu: r-biobroom: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.22.0.
2020-12-09 12:12:33 +01:00
zimoun 2f36b0406e
gnu: r-bioassayr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.0.
2020-12-09 12:12:33 +01:00
zimoun 95ef268142
gnu: r-chemminer: Update to 3.42.0.
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.0.
2020-12-09 12:12:33 +01:00
zimoun 1e28867803
gnu: r-bigpint: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.6.0.
2020-12-09 12:12:33 +01:00
zimoun e80f8262f6
gnu: r-bigmemoryextras: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-bigmemoryextras): Update to 1.38.0.
2020-12-09 12:12:33 +01:00
zimoun 0f94a9edb0
gnu: r-biggr: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.26.0.
2020-12-09 12:12:33 +01:00
zimoun 249b703056
gnu: r-hyperdraw: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.42.0.
2020-12-09 12:12:33 +01:00
zimoun 294fd58a42
gnu: r-hypergraph: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.62.0.
2020-12-09 12:12:33 +01:00
zimoun 3320f044a3
gnu: r-rsbml: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.48.0.
2020-12-09 12:12:33 +01:00
zimoun d57be63323
gnu: r-bifet: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.10.0.
2020-12-09 12:12:33 +01:00
zimoun 4ec665693d
gnu: r-bicare: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.48.0.
2020-12-09 12:12:33 +01:00
zimoun 2219bef12f
gnu: r-bhc: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.42.0.
2020-12-09 12:12:33 +01:00
zimoun 3cebe2745a
gnu: r-bgx: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.56.0.
2020-12-09 12:12:33 +01:00
zimoun fad5da32dc
gnu: r-bgmix: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.50.0.
2020-12-09 12:12:32 +01:00
zimoun fa7e242910
gnu: r-unifiedwmwqpcr: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.26.0.
2020-12-09 12:12:32 +01:00
zimoun 949626f209
gnu: r-htqpcr: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.44.0.
2020-12-09 12:12:32 +01:00
zimoun 44ecd5f77f
gnu: r-variancepartition: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.20.0.
2020-12-09 12:12:32 +01:00
zimoun 45ea773f94
gnu: r-variantfiltering: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.26.0.
2020-12-09 12:12:32 +01:00
zimoun 87f704b43c
gnu: r-timeseriesexperiment: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.8.0.
2020-12-09 12:12:32 +01:00
zimoun fd7e23b551
gnu: r-wavcluster: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.24.0.
2020-12-09 12:12:32 +01:00
zimoun 0c53f27dd6
gnu: r-reqon: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.36.0.
2020-12-09 12:12:32 +01:00
zimoun 42e00c0923
gnu: r-seqbias: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.38.0.
2020-12-09 12:12:32 +01:00
zimoun a50779b8a3
gnu: r-gdsfmt: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.26.0.
2020-12-09 12:12:32 +01:00
zimoun e7b61ba7f6
gnu: r-roc: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-roc): Update to 1.66.0.
2020-12-09 12:12:31 +01:00
zimoun 5d1bd61137
gnu: r-genie3: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.12.0.
2020-12-09 12:12:31 +01:00
zimoun 7954fe16a0
gnu: r-cicero: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.8.0.
2020-12-09 12:12:31 +01:00
zimoun 6481357330
gnu: r-rcistarget: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.10.0.
2020-12-09 12:12:31 +01:00
zimoun fafaeab48b
gnu: r-depecher: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.6.0.
2020-12-09 12:12:31 +01:00
zimoun 0e78ce36f0
gnu: r-mixomics: Update to 6.14.0.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.14.0.
2020-12-09 12:12:31 +01:00
zimoun 1f7ddaf0fb
gnu: r-flowsom: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.22.0.
2020-12-09 12:12:31 +01:00
zimoun 63033b159a
gnu: r-cytoml: Update to 2.2.1.
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.2.1.
2020-12-09 12:12:31 +01:00
zimoun 5abf0a0dd2
gnu: r-opencyto: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.2.0.
2020-12-09 12:12:30 +01:00
zimoun fd11c7b80f
gnu: r-flowstats: Update to 4.2.0.
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.2.0.
2020-12-09 12:12:30 +01:00
zimoun 1b347814f8
gnu: r-flowworkspace: Update to 4.2.0.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.2.0.
[inputs]: Add zlib.
[propagated-inputs]: Add r-aws-s3 and r-aws-signature.  Remove r-stringr.
2020-12-09 12:12:30 +01:00
zimoun ffa42c7741
gnu: Add r-aws-s3.
* gnu/packages/cran.scm (r-aws-s3): New variable.
2020-12-09 12:12:30 +01:00
zimoun 7f940bd093
gnu: Add r-aws-signature.
* gnu/packages/cran.scm (r-aws-signature): New variable.
2020-12-09 12:12:30 +01:00
zimoun 5bab0b7eee
gnu: r-rprotobuflib: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.2.0.
2020-12-09 12:12:30 +01:00
zimoun 33c5b6d7ca
gnu: r-flowclust: Update to 3.28.0.
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.28.0.
2020-12-09 12:12:30 +01:00
zimoun d5a53ab76b
gnu: r-flowviz: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.54.0.
2020-12-09 12:12:30 +01:00
zimoun eac1eaaa0f
gnu: r-ncdfflow: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.36.0.
2020-12-09 12:12:30 +01:00
zimoun 2cd78131cc
gnu: r-flowmeans: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.50.0.
2020-12-09 12:12:30 +01:00
zimoun 3f0e93b47b
gnu: r-flowcore: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.2.0.
[propagated-inputs]: Add r-s4vectors.
2020-12-09 12:12:29 +01:00
zimoun c6ccd4fcb1
gnu: r-cytolib: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.2.0.
[native-inputs]: Add pkg-config.
2020-12-09 12:12:29 +01:00
zimoun a49024e6af
gnu: r-consensusclusterplus: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.54.0.
2020-12-09 12:12:29 +01:00
zimoun d361222d8f
gnu: r-flowutils: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.54.0.
2020-12-09 12:12:29 +01:00
zimoun d764f1e7fe
gnu: r-rsubread: Update to 2.4.2.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.4.2.
2020-12-09 12:12:29 +01:00
zimoun 458aa44622
gnu: r-annotatr: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.16.0.
2020-12-09 12:12:29 +01:00
zimoun 26e417063f
gnu: r-biosigner: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.18.0.
2020-12-09 12:12:29 +01:00
zimoun 59daf6ed12
gnu: r-ropls: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.22.0.
2020-12-09 12:12:29 +01:00
zimoun e78e04d2ee
gnu: r-multidataset: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.18.0.
2020-12-09 12:12:29 +01:00
zimoun 979b1edc52
gnu: r-birewire: Update to 3.22.0.
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.22.0.
2020-12-09 12:12:29 +01:00
zimoun d8a7bf768f
gnu: r-rqc: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.24.0.
2020-12-09 12:12:29 +01:00
zimoun 1b4c271970
gnu: r-quasr: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.30.0.
2020-12-09 12:12:29 +01:00
zimoun c36d888f42
gnu: r-rhisat2: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.6.0.
2020-12-09 12:12:28 +01:00
zimoun ca0271c550
gnu: r-sgseq: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.24.0.
2020-12-09 12:12:28 +01:00
zimoun ea86d93e8c
gnu: r-rbowtie: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.30.0.
2020-12-09 12:12:28 +01:00
zimoun 4bc0675de0
gnu: r-iclusterplus: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.26.0.
2020-12-09 12:12:28 +01:00
zimoun e65e81d285
gnu: r-biocfilecache: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.14.0.
2020-12-09 12:12:28 +01:00
zimoun 0067589a9e
gnu: r-arrmnormalization: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.30.0.
2020-12-09 12:12:28 +01:00
zimoun d115db7f7d
gnu: r-progeny: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.12.0.
2020-12-09 12:12:28 +01:00
zimoun 9834d1ab38
gnu: r-rbowtie2: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.12.0.
2020-12-09 12:12:28 +01:00
zimoun 59fafa19f5
gnu: r-zfpkm: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.12.0.
2020-12-09 12:12:28 +01:00
zimoun d176ad34d7
gnu: r-webbioc: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.62.0.
2020-12-09 12:12:28 +01:00
zimoun ba53681a46
gnu: r-widgettools: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.68.0.
2020-12-09 12:12:28 +01:00
zimoun 397bcd2ccd
gnu: r-wiggleplotr: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.14.0.
2020-12-09 12:12:28 +01:00
zimoun dc7c6368ed
gnu: r-wrench: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.8.0.
2020-12-09 12:12:28 +01:00
zimoun a3af40eaf5
gnu: r-xcms: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.12.0.
[propagated-inputs]: Add r-mscoreutils.
2020-12-09 12:12:27 +01:00
zimoun fa2201c108
gnu: Add r-mscoreutils.
* gnu/packages/bioconductor.scm (r-mscoreutils): New variable.
2020-12-09 12:12:27 +01:00
zimoun 1e536c307c
gnu: Update r-msnbase to 2.16.0.
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.16.0.
2020-12-09 12:12:27 +01:00
zimoun f4e19e62bb
gnu: r-massspecwavelet: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.56.0.
2020-12-09 12:12:27 +01:00
zimoun 7f71341e5d
gnu: r-xbseq: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.22.0.
2020-12-09 12:12:27 +01:00
zimoun 72476adef5
gnu: r-roar: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-roar): Update to 1.26.0.
2020-12-09 12:12:27 +01:00
zimoun 94dee0af25
gnu: r-yaqcaffy: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.50.0.
2020-12-09 12:12:27 +01:00
zimoun 48aaef23b3
gnu: r-simpleaffy: Update to 2.66.0.
* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.66.0.
2020-12-09 12:12:27 +01:00
zimoun 3d41f0c297
gnu: r-gcrma: Update to 2.62.0.
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.62.0.
2020-12-09 12:12:27 +01:00
zimoun 36f3a19ae6
gnu: r-somaticsignatures: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.26.0.
2020-12-09 12:12:27 +01:00
zimoun 0836ef6b69
gnu: r-gtrellis: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.22.0.
2020-12-09 12:12:27 +01:00
zimoun 65ba4ba5f1
gnu: r-yamss: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.16.0.
2020-12-09 12:12:27 +01:00
zimoun ba0bf98dff
gnu: r-ebimage: Update to 4.32.0.
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.32.0.
2020-12-09 12:12:27 +01:00
zimoun ff8b915377
gnu: r-aucell: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.12.0.
2020-12-09 12:12:26 +01:00
zimoun 85c6636bac
gnu: r-allelicimbalance: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.28.0.
2020-12-09 12:12:26 +01:00
zimoun 577915421d
gnu: r-annotationtools: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.64.0.
2020-12-09 12:12:26 +01:00
zimoun bc12a4b660
gnu: r-annotationfuncs: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.40.0.
2020-12-09 12:12:26 +01:00
zimoun 8a7f7112f1
gnu: r-abaenrichment: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.20.0.
2020-12-09 12:12:26 +01:00
zimoun c3b69d6333
gnu: r-gofuncr: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.10.0.
2020-12-09 12:12:26 +01:00
zimoun 2ba61c67aa
gnu: r-atacseqqc: Update to 1.14.4.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.14.4.
2020-12-09 12:12:26 +01:00
zimoun 392806183d
gnu: r-genomicscores: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.2.0.
2020-12-09 12:12:26 +01:00
zimoun 4b4cd2b8a2
gnu: r-motifstack: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.34.0.
2020-12-09 12:12:26 +01:00
zimoun 301e549c22
gnu: r-motifbreakr: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.4.0.
2020-12-09 12:12:26 +01:00
zimoun a2bae16780
gnu: r-motifdb: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.32.0.
2020-12-09 12:12:26 +01:00
zimoun 41071edcac
gnu: r-rgadem: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.38.0.
2020-12-09 12:12:26 +01:00
zimoun d5dcf1bb4b
gnu: r-bacon: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.18.0.
2020-12-09 12:12:26 +01:00
zimoun 8816139e84
gnu: r-abseqr: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.8.0.
2020-12-09 12:12:26 +01:00
zimoun 68efaafe32
gnu: r-a4: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-a4): Update to 1.38.0.
2020-12-09 12:12:25 +01:00
zimoun 564d4279f2
gnu: r-a4base: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.38.0.
2020-12-09 12:12:25 +01:00
zimoun 2fb8298c80
gnu: r-a4reporting: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.38.0.
2020-12-09 12:12:25 +01:00
zimoun 85155e2ed9
gnu: r-a4preproc: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.38.0.
2020-12-09 12:12:25 +01:00
zimoun fa51705f19
gnu: r-a4classif: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.38.0.
2020-12-09 12:12:25 +01:00
zimoun c47a8cd9e1
gnu: r-a4core: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.38.0.
2020-12-09 12:12:25 +01:00
zimoun 4f82931de4
gnu: r-mlinterfaces: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.70.0.
2020-12-09 12:12:25 +01:00
zimoun 3fd84a461d
gnu: r-clusterprofiler: Update to 3.18.0.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.18.0.
2020-12-09 12:12:25 +01:00
Roel Janssen eb3d17eb99
gnu: r-enrichplot: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.10.1.
[propagated-inputs]: Remove r-annotationdbi, r-europepmc, r-ggplotify,
r-ggridges, and r-gridextra; add r-magrittr and r-shadowtext.
2020-12-09 12:12:25 +01:00
Roel Janssen b7d1ea7bfa
gnu: Add r-shadowtext.
* gnu/packages/cran.scm (r-shadowtext): New variable.
2020-12-09 12:12:25 +01:00
zimoun aeb1d56f8f
gnu: r-dose: Update to 3.16.0.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.16.0.
2020-12-09 12:12:25 +01:00
zimoun d68a9ffa68
gnu: r-fgsea: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.16.0.
2020-12-09 12:12:25 +01:00
zimoun 7dabc6298f
gnu: r-sigpathway: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.58.0.
2020-12-09 12:12:25 +01:00
zimoun 33c905b9c0
gnu: r-anota: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-anota): Update to 1.38.0.
2020-12-09 12:12:24 +01:00
zimoun b2084e4d21
gnu: r-gosemsim: Update to 2.16.1.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.16.1.
2020-12-09 12:12:24 +01:00
zimoun 9813d24ddf
gnu: r-heatplus: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.36.0.
2020-12-09 12:12:24 +01:00
zimoun 67837d4afe
gnu: r-varianttools: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.32.0.
2020-12-09 12:12:24 +01:00
zimoun 2a1a6d74d6
gnu: r-ioniser: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.14.0.
2020-12-09 12:12:24 +01:00
zimoun 37e09611f2
gnu: r-linnorm: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.14.0.
2020-12-09 12:12:24 +01:00
zimoun 50c5fee6b5
gnu: r-bumphunter: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.32.0.
2020-12-09 12:12:24 +01:00
zimoun 0fd830feaa
gnu: r-siggenes: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.64.0.
2020-12-09 12:12:24 +01:00
zimoun e89966e977
gnu: r-illuminaio: Update to 0.32.0.
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.32.0.
2020-12-09 12:12:24 +01:00
zimoun 5c4edeef02
gnu: r-geoquery: Update to 2.58.0.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.58.0.
2020-12-09 12:12:24 +01:00
zimoun bde9dc5b97
gnu: r-scone: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-scone): Update to 1.14.0.
2020-12-09 12:12:24 +01:00
zimoun 8396c45eda
gnu: r-noiseq: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.34.0.
2020-12-09 12:12:24 +01:00
zimoun 38bc0bf808
gnu: r-monocle: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.18.0.
2020-12-09 12:12:24 +01:00
zimoun 532b106856
gnu: r-mast: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-mast): Update to 1.16.0.
2020-12-09 12:12:24 +01:00
zimoun e26b5eefda
gnu: r-icobra: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.18.0.
2020-12-09 12:12:23 +01:00
zimoun 95b1f3507a
gnu: r-ihw: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.18.0.
2020-12-09 12:12:23 +01:00
zimoun 378d67c950
gnu: r-lpsymphony: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.18.0.
2020-12-09 12:12:23 +01:00
zimoun 37da451316
gnu: r-karyoploter: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.16.0.
2020-12-09 12:12:23 +01:00
zimoun 939c888dac
gnu: r-ebseq: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.30.0.
2020-12-09 12:12:23 +01:00
zimoun 850f4c2a36
gnu: r-dnacopy: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.64.0.
2020-12-09 12:12:23 +01:00
zimoun 43d8db0462
gnu: r-copynumber: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.30.0.
2020-12-09 12:12:23 +01:00
zimoun ff4d080422
gnu: r-chipexoqual: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.14.0.
2020-12-09 12:12:23 +01:00
zimoun 967fc58392
gnu: r-savr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-savr): Update to 1.28.0.
2020-12-09 12:12:23 +01:00
zimoun 4217307fb3
gnu: r-destiny: Update to 3.4.0.
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.4.0.
[propagated-inputs]: Remove r-nbconvertr.
2020-12-09 12:12:23 +01:00
zimoun bbae34aae7
gnu: r-biocneighbors: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.8.0.
2020-12-09 12:12:23 +01:00
zimoun a55b1622c5
gnu: r-ruvseq: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.24.0.
2020-12-09 12:12:23 +01:00
zimoun 874a774fcc
gnu: r-dnabarcodes: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.20.0.
2020-12-09 12:12:22 +01:00
zimoun 41d6b41feb
gnu: r-inspect: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.20.0.
2020-12-09 12:12:22 +01:00
zimoun 1c9bdfcf3c
gnu: r-plgem: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.62.0.
2020-12-09 12:12:22 +01:00
zimoun 0ef40b23b6
gnu: r-rots: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-rots): Update to 1.18.0.
2020-12-09 12:12:22 +01:00
zimoun 3dab4570fa
gnu: r-glimma: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.0.0.
2020-12-09 12:12:22 +01:00
zimoun c97bcfbd78
gnu: r-goseq: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.42.0.
2020-12-09 12:12:22 +01:00
zimoun d27dfbf7f9
gnu: r-ctc: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.64.0.
2020-12-09 12:12:22 +01:00
zimoun 3813c9fe56
gnu: r-riboseqr: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.24.0.
2020-12-09 12:12:22 +01:00
zimoun 03b655c524
gnu: r-riboprofiling: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.20.0.
2020-12-09 12:12:22 +01:00
zimoun 63572b0c12
gnu: r-bayseq: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.24.0.
2020-12-09 12:12:22 +01:00
zimoun 3b6484097c
gnu: r-qdnaseq: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.26.0.
2020-12-09 12:12:22 +01:00
zimoun 724000356e
gnu: r-cghcall: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.52.0.
2020-12-09 12:12:22 +01:00
zimoun ee052d05f1
gnu: r-cghbase: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.50.0.
2020-12-09 12:12:22 +01:00
zimoun 6e6c627230
gnu: r-marray: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-marray): Update to 1.68.0.
2020-12-09 12:12:22 +01:00
zimoun d068d96743
gnu: r-chippeakanno: Update to 3.24.0.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.24.0.
2020-12-09 12:12:21 +01:00
zimoun f519b4dc01
gnu: r-graph: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-graph): Update to 1.68.0.
2020-12-09 12:12:21 +01:00
zimoun 1e6920c521
gnu: r-multtest: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.46.0.
2020-12-09 12:12:21 +01:00
Roel Janssen 341ebaaa01
gnu: r-diffbind: Update to 3.0.7.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.7.
[propagated-inputs]: Add r-apeglm, r-ashr, and r-greylistchip; remove r-edger.
2020-12-09 12:12:21 +01:00
Roel Janssen 6e396c4bff
gnu: Add r-greylistchip.
* gnu/packages/bioconductor.scm (r-greylistchip): New variable.
2020-12-09 12:12:21 +01:00
Roel Janssen c84762c446
gnu: Add r-ashr.
* gnu/packages/cran.scm (r-ashr): New variable.
2020-12-09 12:12:21 +01:00
Roel Janssen 755d16a3b0
gnu: Add r-mixsqp.
* gnu/packages/cran.scm (r-mixsqp): New variable.
2020-12-09 12:12:21 +01:00
Roel Janssen deda2319f7
gnu: Add r-etrunct.
* gnu/packages/cran.scm (r-etrunct): New variable.
2020-12-09 12:12:21 +01:00
Roel Janssen a7f4a8b4d0
gnu: Add r-invgamma.
* gnu/packages/cran.scm (r-invgamma): New variable.
2020-12-09 12:12:21 +01:00
Roel Janssen 3b399e514f
gnu: Add r-apeglm.
* gnu/packages/bioconductor.scm (r-apeglm): New variable.
2020-12-09 12:12:21 +01:00
Roel Janssen a0df9b93ef
gnu: Add r-rcppnumerical.
* gnu/packages/bioconductor.scm (r-rcppnumerical): New variable.
2020-12-09 12:12:21 +01:00
zimoun e9b60a2901
gnu: r-qvalue: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.22.0.
2020-12-09 12:12:21 +01:00
zimoun 9af6fdf861
gnu: r-oligo: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.54.0.
2020-12-09 12:12:21 +01:00
zimoun 464df5ccbb
gnu: r-oligoclasses: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.52.0.
2020-12-09 12:12:21 +01:00
zimoun d72c4c98c8
gnu: r-geneplotter: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.68.0.
2020-12-09 12:12:20 +01:00
zimoun c03c76344e
gnu: r-reportingtools: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.30.0.
2020-12-09 12:12:20 +01:00
zimoun d1ff3604b7
gnu: r-regioner: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.22.0.
2020-12-09 12:12:20 +01:00
zimoun fa7578b32f
gnu: r-hpar: Update to 1.32.1.
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.32.1.
2020-12-09 12:12:20 +01:00
zimoun 7d56302332
gnu: r-annotate: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.68.0.
[propagated-inputs]: Remove 'r-rcurl', add 'r-httr'.
2020-12-09 12:12:20 +01:00
zimoun 8e6a2c328f
gnu: r-affxparser: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.62.0.
2020-12-09 12:12:20 +01:00
zimoun a92219b45f
gnu: r-affycoretools: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.62.0.
2020-12-09 12:12:20 +01:00
zimoun 3e82f9ccaf
gnu: r-affycontam: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.48.0.
2020-12-09 12:12:20 +01:00
zimoun fa2d16cc27
gnu: r-affycompatible: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.50.0.
2020-12-09 12:12:20 +01:00
zimoun c472549f67
gnu: r-affycomp: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.66.0.
2020-12-09 12:12:20 +01:00
zimoun aa311eaa74
gnu: r-biocgenerics: Update to 0.36.0.
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.36.0.
2020-12-09 12:12:20 +01:00
zimoun 70ab99096d
gnu: r-biocversion: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.12.0.
2020-12-09 12:12:20 +01:00
zimoun a3e2e53837
gnu: r-cummerbund: Update to 2.32.0.
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.32.0.
2020-12-09 12:12:20 +01:00
zimoun 5ef637ddc7
gnu: r-coverageview: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.28.0.
2020-12-09 12:12:20 +01:00
zimoun 25f4e6520e
gnu: r-ideoviz: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.26.0.
2020-12-09 12:12:20 +01:00
Efraim Flashner 533935ccf7
services: science.scm: Add missing copyright headers.
This module was always supposed to have the GPL3 header in place.
Follow-up to 8f19e63f76.

* gnu/services/science.scm: Add Copyright headers.
2020-12-09 12:55:02 +02:00
Guillaume Le Vaillant 53c480006b
gnu: monero-gui: Update to 0.17.1.6.
* gnu/packages/finance.scm (monero-gui): Update to 0.17.1.6.
2020-12-09 11:34:25 +01:00
Guillaume Le Vaillant 5560bd7b6b
gnu: monero: Update to 0.17.1.6.
* gnu/packages/finance.scm (monero): Update to 0.17.1.6.
2020-12-09 11:34:25 +01:00
elaexuotee@wilsonb.com 8e2aad26ae
gnu: Add lemonbar-xft.
* gnu/packages/wm.scm (lemonbar-xft): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-09 09:10:33 +00:00
Ryan Prior 9941036559
gnu: Add go-github-com-aws-sdk.
* gnu/packages/golang.scm (go-github-com-aws-sdk): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-12-09 09:45:35 +02:00
Ryan Prior 016501aec6
gnu: Add go-github-com-jmespath-go-jmespath.
* gnu/packages/golang.scm (go-github-com-jmespath-go-jmespath): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-12-09 09:45:35 +02:00
Ryan Prior f7c2896e52
gnu: Add go-github-com-go-sql-driver-mysql.
* gnu/packages/golang.scm (go-github-com-go-sql-driver-mysql): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-12-09 09:45:31 +02:00
Leo Famulari 2b0185a74b
gnu: linux-libre 4.14: Update to 4.14.211.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.211.
(linux-libre-4.14-pristine-source): Update hash.
2020-12-09 01:08:15 -05:00
Leo Famulari a2eae5ec4a
gnu: linux-libre 4.19: Update to 4.19.162.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.162.
(linux-libre-4.19-pristine-source): Update hash.
2020-12-09 01:08:15 -05:00
Leo Famulari 66b1b55148
gnu: linux-libre 5.4: Update to 5.4.82.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.82.
(linux-libre-5.4-pristine-source): Update hash.
2020-12-09 01:08:14 -05:00
Leo Famulari 54f777ca4e
gnu: linux-libre: Update to 5.9.13.
* gnu/packages/linux.scm (linux-libre-5.9-version): Update to 5.9.13.
(linux-libre-5.9-pristine-source): Update hash.
2020-12-09 01:08:09 -05:00
Leo Famulari 02b21f35cc
gnu: OpenSSL: Update to 1.1.1i [fixes CVE-2020-1971].
* gnu/packages/tls.scm (openssl)[replacement]: Update replacement to 1.1.1i
(openssl-1.1.1g): Replace with ...
(openssl-1.1.1i): ... new variable.
2020-12-08 19:48:09 -05:00
Ludovic Courtès 456421fc0f
gnu: guix: Update to 799f066.
* gnu/packages/package-management.scm (guix): Update to 799f066.
2020-12-08 23:38:04 +01:00
Ludovic Courtès 4a98735297
gnu: autotools: Add version 2.70.
* gnu/packages/autotools.scm (autoconf): Rename to...
(autoconf-2.69): ... this.
(autoconf): Define as an alias for AUTOCONF-2.69.
(autoconf-2.70): New variable.
2020-12-08 22:28:00 +01:00
Vincent Legoll 20e5658c04
gnu: ocaml-menhir: Update to 20200211.
* gnu/packages/ocaml.scm (ocaml-menhir): Update to 20200211.
[build-system]: Switch from gnu to dune.
[arguments]: Remove phases and make-flags.
[native-inputs]: Remove field.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 20:18:11 +00:00
Efraim Flashner 2d1a621b8d
gnu: mruby: Update to 2.1.2.
* gnu/packages/ruby.scm (mruby): Update to 2.1.2.
2020-12-08 22:09:30 +02:00
L p R n d n 8a55a3994c
gnu: Add mypaint.
* gnu/packages/image.scm (mypaint): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 20:06:38 +00:00
Christopher Baines c9c3569ad9
gnu: libmypaint: Update to 1.6.1.
Needed by mypaint@2.0.1.

* gnu/packages/gimp.scm (libmypaint): Update to 1.6.1.
2020-12-08 20:06:34 +00:00
Leo Famulari e1d3b07ffc
gnu: isync: Use OpenSSL 1.1.
* gnu/packages/mail.scm (isync)[inputs]: Replace openssl-1.0 with openssl.
2020-12-08 13:25:27 -05:00
Efraim Flashner adbb62f16e
gnu: fcitx5-material-color-theme: Add source file-name.
* gnu/packages/fcitx5.scm (fcitx5-material-color-theme)[source]: Add
file-name field.
2020-12-08 18:14:31 +02:00
Zhu Zihao af34f757ce
gnu: Add fcitx5-material-color-theme.
* gnu/packages/fcitx5.scm (fcitx5-material-color-theme): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
Zhu Zihao ac1c7530d8
gnu: Add fcitx5-configtool.
* gnu/packages/fcitx5.scm (fcitx5-configtool): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
Zhu Zihao 9a23698ecd
gnu: Add fcitx5-chinese-addons.
* gnu/packages/fcitx5.scm (fcitx5-chinese-addons): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
Zhu Zihao d4aca38b50
gnu: Add fcitx5-gtk.
* gnu/packages/fcitx5.scm (fcitx5-gtk): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
Zhu Zihao 4394d3721a
gnu: Add fcitx5-qt.
* gnu/packages/fcitx5.scm (fcitx5-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
Zhu Zihao 69d3419ca3
gnu: Add libime.
* gnu/packages/fcitx5.scm (libime): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
Zhu Zihao 2d07803be8
gnu: Add fcitx5-lua.
* gnu/packages/fcitx5.scm (fcitx5-lua): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
Zhu Zihao aa5cfb39a5
gnu: Add fcitx5.
* gnu/packages/fcitx5.scm (fcitx5): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
Zhu Zihao ad6cf3d4ad
gnu: Add xcb-imdkit.
* gnu/packages/fcitx5.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08 20:31:47 +08:00
Mathieu Othacehe 770fb659a6
services: cuirass: Add queue-size option.
* gnu/services/cuirass.scm (<cuirass-configuration>): Add "queue-size" field.
(cuirass-shepherd-service): Honor it.
* doc/guix.texi (Continuous Integration): Document it.
2020-12-08 11:56:26 +01:00
Mathieu Othacehe 2dd4f389c7
gnu: cuirass: Update to 0.0.1-56.697fa14.
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-56.697fa14.
2020-12-08 11:48:53 +01:00
Ryan Prior ab58b2cc32
gnu: Add cjson.
* gnu/packages/javascript.scm (cjson): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 09:26:46 +00:00
Ryan Prior b5c51ae086
gnu: Add tiny-bignum.
* gnu/packages/maths.scm (tiny-bignum): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 09:21:50 +00:00
Martin Becze 2d8deaa06e
gnu: trezord: Update to 2.0.30.
* gnu/packages/finance.scm (trezord): Update to 2.0.30.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 08:50:43 +00:00
Martin Becze 2d9acf675a
gnu: Add go-gopkg-in-natefinch-lumberjack.v2.
* gnu/packages/golang.scm (go-gopkg-in-natefinch-lumberjack.v2): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 08:50:43 +00:00
Martin Becze 2d0716e081
gnu: Add go-github-com-gorilla-csrf.
* gnu/packages/golang.scm (go-github-com-gorilla-csrf): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 08:37:49 +00:00
Martin Becze 4368b9b2d7
gnu: Add go-github-com-gorilla-securecookie.
* gnu/packages/golang.scm (go-github-com-gorilla-securecookie): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 08:37:49 +00:00
Martin Becze d2a42cee0b
gnu: Add go-github-com-gorilla-handlers.
* gnu/packages/golang.scm (go-github-com-gorilla-handlers): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 08:37:49 +00:00
Martin Becze 33504d4d70
gnu: Add go-github-com-felixge-httpsnoop.
* gnu/packages/golang.scm (go-github-com-felixge-httpsnoop): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 08:37:44 +00:00
Martin Becze 836428c793
gnu: go-github-com-gorilla-mux: Update to 1.8.0.
* gnu/packages/golang.scm (go-github-com-gorilla-mux): Update to 1.8.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08 08:31:29 +00:00
Tobias Geerinckx-Rice 53cd301b08
gnu: scummvm: Update source URL.
* gnu/packages/emulators.scm (scummvm)[source]: Use HTTPS & new
subdomain.

Reported by Matthew Brooks <matthewfbrooks@mailbox.org>.
2020-12-08 08:46:54 +01:00
Michael Rohleder dcf8dd2be5
gnu: gita: Install shell completions.
* gnu/packages/version-control.scm (gita)[arguments]: Add phase
install-shell-completions.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-12-08 08:09:21 +03:00
Ryan Desfosses b5e52d8225
gnu: Add emacs-burly.
* gnu/packages/emacs-xyz.scm (emacs-burly): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-12-08 07:59:24 +03:00
Ryan Desfosses fedf7d5721
gnu: Add emacs-map.
* gnu/packages/emacs-xyz.scm (emacs-map): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-12-08 07:59:22 +03:00
Leo Prikler 403dda2e66
gnu: shadowsocks: Build against openssl.
This patch allows shadowsocks to be used without supplying libopenssl in its
configuration.  See also https://unix.stackexchange.com/questions/623324/.

* gnu/packages/networking.scm (shadowsocks)[inputs]: Add openssl.
[#:phases]: Add patch-crypto-paths.

Signed-off-by: Marius Bakke <marius@gnu.org>
2020-12-08 00:45:56 +01:00
Marius Bakke adf0edadef
gnu: qoauth: Minor cosmetic improvements.
* gnu/packages/web.scm (qoauth)[arguments]: Add #:tests?.  Don't delete
'check' phase.  Override 'configure' instead of adding new phase.
2020-12-08 00:45:56 +01:00
Marius Bakke 627b70e3ac
gnu: qoauth: Fix build failure.
Fixes <https://bugs.gnu.org/45031>.
Reported by Distopico <distopico@riseup.net>.

* gnu/packages/web.scm (qoauth)[arguments]: Add phase
'adjust-mkspecs-directory'.
2020-12-08 00:45:56 +01:00
Marius Bakke 63be1a7dae
gnu: qca: Correct license.
* gnu/packages/kde.scm (qca)[license]: Change from LGPL2.1 to LGPL2.1+.
2020-12-08 00:45:56 +01:00
Oleg Pykhalov 608113c083
gnu: Add gita.
* gnu/packages/version-control.scm (gita): New variable.
2020-12-08 01:49:38 +03:00
Tobias Geerinckx-Rice ac3af8f7ed
gnu: imapfilter: Update to 2.7.5.
* gnu/packages/mail.scm (imapfilter): Update to 2.7.5.
2020-12-07 23:44:36 +01:00
Nicolas Goaziou f6b1288913
gnu: grammalecte: Update to 2.0.0.
* gnu/packages/dictionaries.scm (grammalecte): Update to 2.0.0.
2020-12-07 22:43:57 +01:00
Kei Kebreau 906fc9116f
gnu: Add glmark2.
* gnu/packages/gl.scm (glmark2): New variable.
2020-12-07 16:08:42 -05:00
Michael Rohleder 476f19f57a
gnu: xfce4-whiskermenu-plugin: Fix installed shell script.
* gnu/packages/xfce.scm (xfce4-whiskermenu-plugin): Fix installed shell script.
[arguments]: Add phase fix-shell-script to substitute paths to xfce4-panel and
gettext.
[inputs]: Add gettext-minimal.

Co-authored-by: Kei Kebreau <kkebreau@posteo.net>
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2020-12-07 16:08:41 -05:00
Tobias Geerinckx-Rice d2ff5931ab
gnu: bombadillo: Update to 2.3.3.
* gnu/packages/web-browsers.scm (bombadillo): Update to 2.3.3.
2020-12-07 21:52:22 +01:00
Tobias Geerinckx-Rice df11cf2f66
gnu: qutebrowser: Update to 1.14.1.
* gnu/packages/web-browsers.scm (qutebrowser): Update to 1.14.1.
2020-12-07 21:52:22 +01:00
Tobias Geerinckx-Rice 5fb085da6b
gnu: yapet: Omit duplicate licence files.
* gnu/packages/password-utils.scm (yapet)[arguments]: Set a better --docdir.
2020-12-07 21:52:22 +01:00
Tobias Geerinckx-Rice 1385ac55a4
gnu: yapet: Update to 2.5.
* gnu/packages/password-utils.scm (yapet): Update to 2.5.
2020-12-07 21:52:22 +01:00
Tobias Geerinckx-Rice 8c0d6a533a
gnu: feh: Update to 3.6.1.
* gnu/packages/image-viewers.scm (feh): Update to 3.6.1.
2020-12-07 21:52:22 +01:00
Tobias Geerinckx-Rice 36e80e32f3
gnu: libmanette: Update to 0.2.6.
* gnu/packages/games.scm (libmanette): Update to 0.2.6.
2020-12-07 21:52:22 +01:00
Tobias Geerinckx-Rice 88a26bfd52
gnu: thermald: Update to 2.4.1.
* gnu/packages/admin.scm (thermald): Update to 2.4.1.
2020-12-07 21:52:22 +01:00
Nicolas Goaziou 08d8c2d3c0
gnu: emacs-moody: Update to 0.5.4.
* gnu/packages/emacs-xyz.scm (emacs-moody): Update to 0.5.4.
2020-12-07 17:02:10 +01:00
André Alexandre Gomes 985570ad30
gnu: Add emacs-modus-themes.
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): New variable.
(emacs-modus-operandi-theme, emacs-modus-vivendi-theme): Deprecate package in
favor of emacs-modus-themes.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-07 16:27:03 +01:00
Ludovic Courtès aecd2a13cb
services: openssh: Warn about 'password-authentication?' default.
Fixes <https://bugs.gnu.org/44808>.
Reported by Christopher Lemmer Webber <cwebber@dustycloud.org>.

* gnu/services/ssh.scm (true-but-soon-false): New procedure.
(<openssh-configuration>)[password-authentication?]: Change default to
'true-but-soon-false'.
* gnu/installer/services.scm (%system-services): Explicitly set
'password-authentication?' to #f.
2020-12-07 12:48:26 +01:00
Ludovic Courtès 859b362f81
services: hurd-vm: Avoid circular dependency with (gnu system images hurd).
* gnu/services/virtualization.scm (hurd-vm-disk-image): Use
'lookup-image-type-by-name' instead of referring to 'hurd-disk-image'
from (gnu system images hurd).
2020-12-07 12:48:26 +01:00
Efraim Flashner 27cf238744
Revert "gnu: vim: Run more tests."
This reverts commit 17a53aec7a.

This breaks building vim on ARM architectures.
2020-12-07 12:48:07 +02:00
Efraim Flashner 3832704aff
gnu: minimap2: Fix build on aarch64-linux.
* gnu/packages/bioinformatics.scm (minimap2)[arguments]: Adjust
configure-flags to be better per-architecture.
[source]: Add patch.
* gnu/packages/patches/minimap2-aarch64-support.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2020-12-07 12:48:07 +02:00
Efraim Flashner f48cd014f3
gnu: minimap2: Prepare for cross compilation.
* gnu/packages/bioinformatics.scm (minimap2)[arguments]: Use
cc-for-target.
2020-12-07 12:48:01 +02:00
Michael Rohleder 65555198b2
gnu: emacs-with-editor: Update to 3.0.2.
* gnu/packages/emacs-xyz.scm (emacs-with-editor): Update to 3.0.2.
[propagated-inputs]: Changed emacs-dash to emacs-async.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-07 11:40:47 +01:00
Mathieu Othacehe e461d3b750
service: Add shepherd discover action.
* gnu/services/base.scm (shepherd-discover-action): New procedure,
(guix-shepherd-service)[<actions>]: add it,
[<start>]: honor it.
* doc/guix.texi (Invoking guix-daemon): Document it.
2020-12-07 10:39:21 +01:00
Christopher Baines 92f7c11af2
prometheus-node-exporter: Support extra options.
There are plenty of options supported that the Guix configuration record
doesn't help you with, so add this field to allow users to do their own thing.

* gnu/services/monitoring.scm (<prometheus-node-exporter-configuration>): Add
extra-options field.
(prometheus-node-exporter-shepherd-service): Handle the extra options.
* doc/guix.texi (Prometheus Node Exporter Service): Document this.
2020-12-07 09:08:33 +00:00
Christopher Baines fd14385581
prometheus-node-exporter: Enable the textfile collector.
* gnu/services/monitoring.scm (<prometheus-node-exporter-configuration>): Add
textfile-directory.
(prometheus-node-exporter-textfile-directory,
prometheus-node-exporter-activation): New procedures.
(prometheus-node-exporter-shepherd-service): Pass
--collector.textfile.directoryto the service.
(prometheus-node-exporter-service-type): Extend the activation service type.
* doc/guix.texi (Prometheus Node Exporter Service): Document.
2020-12-07 09:08:20 +00:00
Christopher Baines fa0975ad71
services: prometheus-node-exporter: Use a log file.
This makes the logs easier to find and read.

* gnu/services/monitoring.scm (prometheus-node-exporter-shepherd-service):
Pass #:log-file to make-forkexec-constructor.
2020-12-07 09:08:09 +00:00
Christopher Baines 6574298e4e
prometheus-node-exporter: Add user and group.
So it doesn't run as root, and because this will help with the textfile
exporter.

* gnu/services/monitoring.scm (%prometheus-node-exporter-accounts): New
variable.
(prometheus-node-exporter-shepherd-service): Use the relevant user and group.
(prometheus-node-exporter-service-type): Extend the account service type.
2020-12-07 09:07:54 +00:00
Christopher Baines 502cb3f8a1
services: prometheus-node-exporter: Neaten up.
Add relevant exports, as well as a comment to better indicate where the
relevant code starts.

* gnu/services/monitoring.scm (prometheus-node-exporter-service-type):
Capitalise Prometheus.
2020-12-07 09:07:13 +00:00
Antoine Côté 928bedcab7
gnu: rav1e: Update to 0.3.4.
* gnu/packages/video.scm (rav1e): Update to 0.3.4.
[arguments]: In cargo-inputs replace rust-aom-sys-0.1 with 0.2,
rust-nasm-rs-0.1 with 0.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-07 09:27:27 +01:00
Antoine Côté b536f3bbd9
gnu: Add rust-nasm-rs-0.2.
* gnu/packages/crate-io.scm (rust-nasm-rs-0.2): New variable.
(rust-nasm-rs-0.1): Inherit from rust-nasm-rs-0.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-07 09:27:15 +01:00
Antoine Côté cbd33c0da1
gnu: Add rust-aom-sys-0.2.
* gnu/packages/crates-graphics.scm (rust-aom-sys-0.2): New variable.
(rust-aom-sys-0.1): Inherit from rust-aom-sys-0.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-07 09:27:04 +01:00
Joseph LaFreniere f15cc2f4a2
gnu: Add emacs-counsel-jq.
* gnu/packages/emacs-xyz.scm (emacs-counsel-jq): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-12-07 10:52:47 +03:00
Vagrant Cascadian c8ea8516d0
gnu: diffoscope: Update to 162.
* gnu/packages/diffoscope (diffoscope): Update to 162.
2020-12-06 19:28:56 -08:00
Giacomo Leidi 0c86b24c41
gnu: Add hledger-web.
* gnu/packages/finance.scm (hledger-web): New variable.

Signed-off-by: Timothy Sample <samplet@ngyro.com>
2020-12-06 21:35:41 -05:00
Giacomo Leidi 897f47bc6a
gnu: Add ghc-wai-cors.
* gnu/packages/haskell-web.scm (ghc-wai-cors): New variable.

Signed-off-by: Timothy Sample <samplet@ngyro.com>
2020-12-06 21:35:35 -05:00
Giacomo Leidi 36017770f7
gnu: Add ghc-wai-handler-launch.
* gnu/packages/haskell-web.scm (ghc-wai-handler-launch): New variable.

Signed-off-by: Timothy Sample <samplet@ngyro.com>
2020-12-06 21:35:21 -05:00
Giacomo Leidi 90eae236aa
gnu: Add ghc-yesod-static.
* gnu/packages/haskell-web.scm (ghc-yesod-static): New variable.

Signed-off-by: Timothy Sample <samplet@ngyro.com>
2020-12-06 21:35:13 -05:00
Giacomo Leidi 8bbb759c83
gnu: Add ghc-hjsmin.
* gnu/packages/haskell-web.scm (ghc-hjsmin): New variable.

Signed-off-by: Timothy Sample <samplet@ngyro.com>
2020-12-06 21:35:05 -05:00
Giacomo Leidi 4cb7802121
gnu: Add ghc-cryptonite-conduit.
* gnu/packages/haskell-crypto.scm (ghc-cryptonite-conduit): New variable.

Signed-off-by: Timothy Sample <samplet@ngyro.com>
2020-12-06 21:34:57 -05:00
Giacomo Leidi fd076aefcd
gnu: Add ghc-wai-app-static.
* gnu/packages/haskell-web.scm (ghc-wai-app-static): New variable.

Signed-off-by: Timothy Sample <samplet@ngyro.com>
2020-12-06 21:34:46 -05:00
Giacomo Leidi 2e77bb473b
gnu: Add ghc-yesod-test.
* gnu/packages/haskell-web.scm (ghc-yesod-test): New variable.

Signed-off-by: Timothy Sample <samplet@ngyro.com>
2020-12-06 21:34:37 -05:00
Giacomo Leidi 4ad5ce4f78
gnu: ghc-yesod-core: Update to 1.6.17.2.
* gnu/packages/haskell-web.scm (ghc-yesod-core): Update to 1.6.17.2.

Signed-off-by: Timothy Sample <samplet@ngyro.com>
2020-12-06 21:34:24 -05:00
Brett Gilio 1db54324b2
gnu: python-transient: Update to 0.12.
* gnu/packages/virtualization.scm (python-transient): Update to 0.12.
2020-12-06 18:08:30 -06:00
Leo Famulari 8f805657b9
gnu: Add the Glimpse Image Editor.
* gnu/packages/gimp.scm (glimpse): New variable.
2020-12-06 18:40:42 -05:00
Tobias Geerinckx-Rice c7fcd248c2
gnu: zabbix-agentd: Update to 5.2.2.
* gnu/packages/monitoring.scm (zabbix-agentd): Update to 5.2.2.
2020-12-07 00:38:44 +01:00
Tobias Geerinckx-Rice 4a6cc1bbb9
gnu: mutt: Update to 2.0.3.
* gnu/packages/mail.scm (mutt): Update to 2.0.3.
2020-12-07 00:38:43 +01:00
Tobias Geerinckx-Rice c73b1257fc
gnu: youtube-dl: Update to 2020.12.07.
* gnu/packages/video.scm (youtube-dl): Update to 2020.12.07.
2020-12-07 00:38:42 +01:00
Tobias Geerinckx-Rice ac50633c15
gnu: hplip: Update to 3.20.11.
* gnu/packages/cups.scm (hplip): Update to 3.20.11.
[source]: Remove upstreamed patch.
* gnu/packages/patches/hplip-fix-bug-1898438.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-12-06 23:50:44 +01:00
Tobias Geerinckx-Rice a79e05f9e8
gnu: libopenmpt: Update to 0.5.4.
* gnu/packages/audio.scm (libopenmpt): Update to 0.5.4.
2020-12-06 23:50:44 +01:00
Tobias Geerinckx-Rice c24d1f2e6f
gnu: nsd: Update to 4.3.4.
* gnu/packages/dns.scm (nsd): Update to 4.3.4.
2020-12-06 23:50:43 +01:00
Tobias Geerinckx-Rice 71efb620cb
gnu: ropgadget: Update to 6.4.
* gnu/packages/cybersecurity.scm (ropgadget): Update to 6.4.
2020-12-06 23:50:43 +01:00
Tobias Geerinckx-Rice 6a84fddcaa
gnu: pam-mount: Update to 2.17.
* gnu/packages/admin.scm (pam-mount): Update to 2.17.
[source]: Remove upstreamed patch.
* gnu/packages/patches/pam-mount-luks2-support.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-12-06 23:50:43 +01:00
Tobias Geerinckx-Rice 9b5ed03969
gnu: fio: Update to 3.25.
* gnu/packages/benchmark.scm (fio): Update to 3.25.
2020-12-06 23:50:43 +01:00
Ryan Prior 6374a25357
gnu: esbuild: Update to 0.8.19.
* gnu/packages/web.scm (esbuild): Update to 0.8.19.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-12-06 23:19:15 +01:00
Ludovic Courtès ce3b5e5a8d
services: mpd: Make /var/run/mpd/USER user-owned.
Fixes <https://bugs.gnu.org/44820>.
Reported by Simon <lists@netpanic.org>.

This is a followup to bb124f6e9c.

* gnu/services/audio.scm (mpd-service-activation): Chown the parent of
DIRECTORY as well.
2020-12-06 23:18:08 +01:00
Ekaitz Zarraga 383f087cd7
gnu: freecad: Update to 0.18.5
* gnu/packages/engineering.scm (freecad): Update to 0.18.5

Signed-off-by: Marius Bakke <marius@gnu.org>
2020-12-06 22:28:10 +01:00
Ekaitz Zarraga 50c24bbd4f
gnu: freecad: Fix compilation flags.
* gnu/packages/engineering.scm (freecad)[arguments]: Set correct
search paths in compilation flags.  Fixes <https://bugs.gnu.org/43448>.

Signed-off-by: Marius Bakke <marius@gnu.org>
2020-12-06 22:28:10 +01:00
Christopher Baines bca3220b60
gnu: guix-build-coordinator: Update to 0-10.79e28fb.
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-10.79e28fb.
2020-12-06 21:09:42 +00:00
Christopher Baines eb0b29f13d
gnu: guix-build-coordinator: Support cross-compilation.
Due to fibers not supporting the Hurd yet, the coordinator itself won't work,
but the agent should.

* gnu/packages/package-management.scm (guix-build-coordinator)[inputs]: Don't
include sqitch if building for the hurd.
[propagated-inputs]: Don't include guile-fibers if building for the hurd.
2020-12-06 21:09:42 +00:00
Christopher Baines 7306c67912
gnu: guile-lib: Support cross-compilation.
* gnu/packages/guile-xyz.scm (guile-lib)[native-inputs]: Add guile-3.0.
(guile2.0-lib, guile2.2-lib)[native-inputs]: Explicitly specifiy pkg-config.
2020-12-06 21:09:41 +00:00
Marius Bakke 329fa5bdbb
Revert "linux-container: Correct test for unprivileged user namespace support."
This broke 'guix environment --container' on non-Debian distributions.
Fixes <https://bugs.gnu.org/45066>.  Reported by luhux <luhux@outlook.com>.

This reverts commit 8bc5ca5160.
2020-12-06 21:55:18 +01:00
Marius Bakke 3f35b09e8d
gnu: Add foot.
* gnu/packages/terminals.scm (foot): New public variable.
2020-12-06 18:30:12 +01:00
Marius Bakke 25e08f32c1
gnu: Add fcft.
* gnu/packages/fontutils.scm (fcft): New public variable.
2020-12-06 18:30:12 +01:00
Marius Bakke 0d59aecf63
gnu: Add tllist.
* gnu/packages/datastructures.scm (tllist): New public variable.
2020-12-06 18:30:12 +01:00
Marius Bakke 0c68fff5af
gnu: Sort module imports in (gnu packages fontutils).
* gnu/packages/fontutils.scm: Sort (gnu ...) module imports.
2020-12-06 18:30:12 +01:00
Tobias Geerinckx-Rice 10defc57bf
linux-initrd: Add bcachefs support.
* gnu/system/linux-initrd.scm (file-system-packages): Add
bcachefs-tools/static.
(file-system-type-modules): Add an entry for the "bcachefs" type and
module.
2020-12-06 16:11:43 +01:00
Tobias Geerinckx-Rice 23be018d4f
file-systems: Fix ‘bcachefs fsck’ exit value logic.
Bit 1 means the target device was mounted read-only whilst checking.
This should never happen in an initrd context but is not an error.

* gnu/build/file-systems.scm (check-bcachefs-file-system): Ignore status
bits that don't signal an error.  Remove the 'reboot-required case.
2020-12-06 16:11:43 +01:00
Nicolas Goaziou e8528f03f9
gnu: emacs-hyperbole: Condensate description.
* gnu/packages/emacs-xyz.scm (emacs-hyperbole)[description]: Remove buzzwords.
Condensate information.
2020-12-06 15:42:45 +01:00
Michael Rohleder dc60e1c71e
gnu: emacs-info-plus: Update to 0-3.29811ed.
* gnu/packages/emacs-xyz.scm (emacs-info-plus): Update to 0-3.29811ed.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-06 15:34:46 +01:00
Nicolas Goaziou ee00b7c3ec
gnu: bat: Fix build.
* gnu/packages/rust-apps.scm (bat)[native-inputs]: Add pkg-config.
[inputs]: Add libgit2.

This is a followup to 063f6dfc37.
2020-12-06 13:54:59 +01:00
Ricardo Wurmus 8bc7015e71
gnu: mumi: Use latest unreleased guile-email.
* gnu/packages/mail.scm (mumi)[inputs]: Replace "guile-email" with
"guile-email-latest".
2020-12-06 12:43:53 +01:00
Ricardo Wurmus 8b3b1f34e6
gnu: Add guile-email-latest.
* gnu/packages/guile-xyz.scm (guile-email-latest): New variable.
2020-12-06 12:43:43 +01:00
Ryan Desfosses d9d6203b7a
gnu: emacs-zenburn-theme: Update to 2.7.0.
* gnu/packages/emacs-xyz.scm (emacs-zenburn-theme): Update to 2.7.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-06 12:21:32 +01:00
Ryan Desfosses c1e7ec0243
gnu: emacs-emacsql-sqlite3: Update to 1.0.2.
* gnu/packages/emacs-xyz.scm (emacs-emacsql-sqlite3): Update to 1.0.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-06 12:17:31 +01:00
Ryan Desfosses 34734b9dfc
gnu: emacs-ebib: Update to 2.27.2.
* gnu/packages/emacs-xyz.scm (emacs-ebib): Update to 2.27.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-06 12:16:19 +01:00
Simon South 74e3c37ae0
gnu: knot-resolver: Move manual, examples to separate "doc" output
* gnu/packages/dns.scm (knot-resolver)[outputs]: Add "doc" output.
[arguments]<phases>: Add "move-doc" phase, which moves the manual (in both
HTML and Info formats) and example configuration files to the "doc" output.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-06 18:35:12 +08:00
Simon South 4fcff59091
gnu: knot-resolver: Update to 5.2.0.
* gnu/packages/dns.scm (knot-resolver): Update to 5.2.0.
[source]: Add patch from upstream commit to fix the internal map() function on
32-bit platforms.
[native-inputs]: Add texinfo to enable generating the manual in Info format.
[inputs]: Add nghttp2:lib to enable the new DNS-over-HTTPS implementation.
* gnu/packages/patches/knot-resolver-fix-map-command-on-32-bit.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-06 18:27:52 +08:00
Zhu Zihao 8e73bf754f
services: nix: Move nix.conf generation to etc-service-type.
/etc/nix/nix.conf is a static file doesn't need rebuild on every boot.

* gnu/services/nix.scm (nix-activation): Don't create /etc/nix/nix.conf.
(nix-service-etc): New function.
(nix-service-type): New service-extension "nix-service-etc" to etc-service-type.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-06 17:48:48 +08:00
Efraim Flashner 063f6dfc37
gnu: rust-libgit2-sys-0.12: Remove bundled library.
* gnu/packages/crates-io.scm (rust-libgit2-sys-0.12)[source]: Add
snippet to remove bundled libgit2 source.
2020-12-06 09:22:11 +02:00
Brett Gilio 937bc58414
gnu: Add libexpected.
* gnu/packages/cpp.scm (libexpected): New variable.
* gnu/packages/patches/libexpected-nofetch.patch: Add patch.
* gnu/local.mk: Reference patch.
2020-12-05 21:10:59 -06:00
Nicolas Goaziou 635fefa049
gnu: bat: Remove duplicate Cargo input.
* gnu/packages/rust-apps.scm (bat)[arguments]: Remove duplicate rust-clap
Cargo input.
2020-12-05 21:57:35 +01:00
Christopher Baines 4b423e2b23
gnu: guix-build-coordinator: Update to 0-9.49c0596.
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-9.49c0596.
2020-12-05 19:14:20 +00:00
Christopher Baines 1e4266dbd8
gnu: guile-prometheus: Update to 0-3.2549c48.
* gnu/packages/guile-xyz.scm (guile-prometheus): Update to 0-3.2549c48.
2020-12-05 19:13:28 +00:00
EuAndreh 32a3367930
gnu: Add diff-so-fancy.
* gnu/packages/version-control.scm (diff-so-fancy): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-12-05 12:55:34 -05:00
Eric Bavier 705af5403b
gnu: superlu-dist: Update to 6.4.0.
* gnu/packages/maths.scm (superlu-dist): Update to 6.4.0
[source]: Use git-fetch, as tarballs are no longer published.
* gnu/packages/patches/superlu-dist-awpm-grid.patch: Remove all but the first
hunk; they are unnecessary.
2020-12-05 11:14:56 -06:00
Eric Bavier 38dd27e866
gnu: combinatorial-blas: Adjust AWPM headers for library use.
Fixes use in latest versions of SuperLU_DIST.  See
e.g. https://github.com/xiaoyeli/superlu_dist/issues/60

* gnu/packages/patches/combinatorial-blas-awpm.patch: Remove globals related
to performance measurement.  Declare non-template function inline.
2020-12-05 11:14:55 -06:00
Eric Bavier 013cf93234
gnu: scotch: Update to 6.1.0
* gnu/packages/maths.scm (scotch): Update to 6.1.0.
2020-12-05 11:14:55 -06:00
Eric Bavier c52f025684
gnu: python-yq: Fix texinfo markup.
* gnu/packages/python-xyz.scm (python-yq): Add missing `command`.
2020-12-05 11:14:47 -06:00
Marius Bakke 1cb91eb50f
gnu: ungoogled-chromium: Update to 87.0.4280.88-0.b78cb92 [security fixes].
* gnu/packages/chromium.scm (%chromium-version): Set to 87.0.4280.88.
(%ungoogled-revision): Set to b78cb927fa8beaee0ddfb4385277edb96444c40f.
(%ungoogled-origin): Update URL and hash.
(ungoogled-chromium): Update hash.
[arguments]: Fix inverted logic in max link jobs.
2020-12-05 18:06:53 +01:00
Nicolas Goaziou 4e811f5662
gnu: Add bat.
* gnu/packages/rust-apps.scm (bat): New variable.
2020-12-05 17:58:10 +01:00
Nicolas Goaziou 6f0b8eaa86
gnu: Add rust-git2-0.13.
* gnu/packages/crates-io.scm (rust-git2-0.13): New variable.
(rust-git2-0.11): Inherit from above.
2020-12-05 17:43:40 +01:00
Nicolas Goaziou 57c88ee947
gnu: Add rust-libgit2-sys-0.12.
* gnu/packages/crates-io.scm (rust-libgit2-sys-0.12): New variable.
(rust-libgit2-sys-0.10): Inherit from above.
2020-12-05 17:43:40 +01:00
Nicolas Goaziou 975b1586a4
gnu: Add rust-syntect-4.
* gnu/packages/crates-io.scm (rust-syntect-4): New variable.
(rust-syntect-3.3): Inherit from above.
2020-12-05 17:39:28 +01:00
Nicolas Goaziou 733c489bbd
gnu: Add rust-onig-6.
* gnu/packages/crates-io.scm (rust-onig-6): New variable.
(rust-onig-5.0): Inherit from above.
2020-12-05 17:39:27 +01:00
Nicolas Goaziou e0c28005c3
gnu: Add rust-onig-sys-69.6.
* gnu/packages/crates-io.scm (rust-onig-sys-69.6): New variable.
(rust-onig-sys-69.2): Inherit from above.
2020-12-05 17:39:27 +01:00
Nicolas Goaziou a027077814
gnu: Add rust-dirs-3.
* gnu/packages/crates-io.scm (rust-dirs-3): New variable.
(rust-dirs-2.0): Inherit from above.
2020-12-05 17:39:26 +01:00
Nicolas Goaziou 210406cb4f
gnu: Add rust-console-0.13.
* gnu/packages/crates-io.scm (rust-console-0.13): New variable.
(rust-console-0.11): Inherit from above.
2020-12-05 17:39:26 +01:00
Nicolas Goaziou 8faddefa03
gnu: Add rust-content-inspector-0.2.
* gnu/packages/crates-io.scm (rust-content-inspector-0.2): New variable.
2020-12-05 17:39:26 +01:00
Nicolas Goaziou bbb25c9cc0
gnu: Add rust-path-abs-0.5.
* gnu/packages/crates-io.scm (rust-path-abs-0.5): New variable.
2020-12-05 17:39:25 +01:00
Nicolas Goaziou 42acc9582d
gnu: Add rust-semver-0.11.
* gnu/packages/crates-io.scm (rust-semver-0.11): New variable.
(rust-semver-0.10): Inherit from above.
2020-12-05 17:39:25 +01:00
Nicolas Goaziou 162ee32dd4
gnu: Add rust-semver-parser-0.10.
* gnu/packages/crates-io.scm (rust-semver-parser-0.10): New variable.
(rust-semver-parser-0.9): Inherit from above.
2020-12-05 17:39:24 +01:00
Nicolas Goaziou 7b81e7aa8e
gnu: Add rust-shell-words-1.
* gnu/packages/crates-io.scm (rust-shell-words-1): New variable.
(rust-shell-words-0.1): Inherit from above.
2020-12-05 17:39:24 +01:00
Nicolas Goaziou 00987a22fe
gnu: Add rust-fancy-regex-0.3.
* gnu/packages/crates-io.scm (rust-fancy-regex-0.3): New variable.
2020-12-05 17:39:23 +01:00
Nicolas Goaziou 9cc9123837
gnu: Add rust-wild-2.
* gnu/packages/crates-io.scm (rust-wild-2): New variable.
2020-12-05 17:20:55 +01:00
Nicolas Goaziou e4800bb9a5
gnu: Add rust-plist-1.
* gnu/packages/crates-io.scm (rust-plist-1): New variable.
(rust-plist-0.4): Inherit from above.
2020-12-05 17:20:55 +01:00
Nicolas Goaziou a715e17f76
gnu: rust-predicates-1: Update to 1.0.5.
* gnu/packages/crates-io.scm (rust-predicates-1): Update to 1.0.5.
[arguments]: Update rust-float-cmp version in Cargo inputs.
[description]: Write a full sentence.
2020-12-05 17:20:49 +01:00
Sharlatan Hellseher cebfb29abb
gnu: Add zs3.
* gnu/packages/lisp-xyz.scm (cl-zs3, ecl-zs3, sbcl-zs3): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2020-12-05 16:01:19 +01:00
Sharlatan Hellseher 65d3fab53a
gnu: Add cl-log.
* gnu/packages/lisp-xyz.scm (cl-log, ecl-cl-log, sbcl-cl-log): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2020-12-05 16:01:19 +01:00
Guillaume Le Vaillant 4354dacede
gnu: sbcl: Simplify 'replace-asdf' phase.
* gnu/packages/lisp.scm (sbcl)[arguments]: Remove unused 'out' variable in
  'replace-asdf' phase.
2020-12-05 16:00:58 +01:00
Guillaume Le Vaillant f62982d96d
gnu: ecl: Simplify 'replace-asdf' phase.
* gnu/packages/lisp.scm (ecl)[arguments]: Remove unused 'out' variable in
  'replace-asdf' phase.
2020-12-05 16:00:58 +01:00
Guillaume Le Vaillant c32a7b3485
gnu: clisp: Use system ASDF instead of bundled one.
* gnu/packages/lisp.scm (clisp)[native-inputs]: Add cl-asdf.
  [arguments]: Add 'replace-asdf' phase.
  [native-search-paths]: Add XDG_CONFIG_DIRS and XDG_DATA_DIRS.
2020-12-05 16:00:58 +01:00
Guillaume Le Vaillant 623a98a9dc
gnu: ccl: Use system ASDF instead of bundled one.
* gnu/packages/lisp.scm (ccl)[native-inputs]: Add cl-asdf.
  [arguments]: Add 'replace-asdf' phase.
  [native-search-paths]: Add XDG_CONFIG_DIRS and XDG_DATA_DIRS.
2020-12-05 16:00:58 +01:00
Guillaume Le Vaillant 031fbebafe
gnu: cl-asdf: Improve priorities of configuration file search.
* gnu/packages/patches/cl-asdf-config-directories.patch: New file.
* gnu/local.mk (dist_PATCH_DATA): Add it.
* gnu/packages/lisp.scm (cl-asdf)[native-inputs]: Add it.
  [arguments]: Apply the new patch.

Co-authored-by: Pierre Neidhardt <mail@ambrevar.xyz>
2020-12-05 16:00:57 +01:00
Nicolas Goaziou 1ab631d4c0
gnu: Add castor.
* gnu/packages/web.scm (castor): New variable.
2020-12-05 14:45:16 +01:00
Nicolas Goaziou fa24775674
gnu: rust-native-tls-0.2: Update to 0.2.6.
* gnu/packages/crates-io.scm (rust-native-tls-0.2): Update to 0.2.6.
[arguments]: Update rust-security-framework-sys, and rust-security-framework
Cargo inputs.  Update rust-hex Cargo development input.
2020-12-05 14:45:16 +01:00
Nicolas Goaziou 5f9d9d0411
gnu: Add rust-security-framework-2.
* gnu/packages/crates-io.scm (rust-security-framework-2): New variable.
(rust-security-framework-1): inherit from above.
2020-12-05 14:45:16 +01:00
Nicolas Goaziou d4d4bf3b64
gnu: Add rust-security-framework-sys-2.
* gnu/packages/crates-io.scm (rust-security-framework-sys-2): New variable.
(rust-security-framework-sys-1): inherit from above.
2020-12-05 14:45:15 +01:00
Nicolas Goaziou 0b36bd01e4
gnu: Add rust-core-foundation-0.9.
* gnu/packages/crates-io.scm (rust-core-foundation-0.9): New variable.
(rust-core-foundation-0.7): inherit from above.
2020-12-05 14:45:15 +01:00
Nicolas Goaziou b970c0ed93
gnu: Add rust-core-foundation-sys-0.8.
* gnu/packages/crates-io.scm (rust-core-foundation-sys-0.8): New variable.
(rust-core-foundation-sys-0.7): inherit from above.
2020-12-05 14:45:15 +01:00
Nicolas Goaziou 50e9f5600b
gnu: Add rust-gdk-0.13.
* gnu/packages/crates-gtk.scm (rust-gdk-0.13): New variable.
(rust-gdk-0.12): inherit from above.
2020-12-05 14:45:14 +01:00
Nicolas Goaziou 979e770cd0
gnu: Add rust-gtk-0.8.
* gnu/packages/crates-gtk.scm (rust-gtk-0.8): New variable.
2020-12-05 14:45:14 +01:00
Nicolas Goaziou 16597f2685
gnu: Add rust-gtk-sys-0.9.
* gnu/packages/crates-gtk.scm (rust-gtk-sys-0.9): New variable.
2020-12-05 14:45:14 +01:00
Nicolas Goaziou 81756b7fe2
gnu: Add rust-gdk-0.12.
* gnu/packages/crates-gtk.scm (rust-gdk-0.12): New variable.
2020-12-05 14:45:13 +01:00
Nicolas Goaziou d283d54e48
gnu: Add rust-gdk-sys-0.9.
* gnu/packages/crates-gtk.scm (rust-gdk-sys-0.9): New variable.
2020-12-05 14:45:13 +01:00
Nicolas Goaziou 8b657f3ece
gnu: Add rust-gdk-pixbuf-0.9.
* gnu/packages/crates-gtk.scm (rust-gdk-pixbuf-0.9): New variable.
(rust-gdk-pixbuf-0.8): inherit from above.
2020-12-05 14:45:13 +01:00
Nicolas Goaziou 8bf089c436
gnu: Add rust-gdk-pixbuf-sys-0.10.
* gnu/packages/crates-gtk.scm (rust-gdk-pixbuf-sys-0.10): New variable.
(rust-gdk-pixbuf-sys-0.9): inherit from above.
2020-12-05 14:45:12 +01:00
Nicolas Goaziou e878244d0a
gnu: Add rust-gio-0.9.
* gnu/packages/crates-gtk.scm (rust-gio-0.9): New variable.
(rust-gio-0.8): inherit from above.
2020-12-05 14:45:12 +01:00