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85365 Commits (3ee7e8c5b9b44e948a9132870771c98f90eda79d)

Author SHA1 Message Date
Rene Saavedra 19f4497cb6
gnu: geary: Add missing input.
* gnu/packages/gnome.scm (geary)[native-inputs]: Add python for configure phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-19 12:29:45 +02:00
jgart 85c5033316
gnu: libtcod: Remove trailing boolean.
* gnu/packages/game-development.scm (libtcod): Remove trailing boolean.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-19 12:29:44 +02:00
Paul A. Patience d262a258bb
gnu: nomad-optimizer: Fix some tests.
* gnu/packages/maths.scm (nomad-optimizer)[arguments]<#:phases>
[fix-sources-for-tests]: Enable the pipefail option in the (generated)
script that runs tests. Enable the basic batch example3 test. Fix the
advanced library FixedVariable test (and seemingly the neighbor PSDMads
test). Expand some comments.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-19 12:29:44 +02:00
Paul A. Patience 11e761b9a6
gnu: nomad-optimizer: Update to 4.2.0.
* gnu/packages/maths.scm (nomad-optimizer): Update to 4.2.0.
[arguments]: Accommodate updated build process.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-19 12:29:44 +02:00
Paul A. Patience 3a6703268b
gnu: nomad-optimizer: Remove trailing booleans.
* gnu/packages/maths.scm (nomad-optimizer)[arguments]: Remove trailing
booleans.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-19 12:29:44 +02:00
Paul A. Patience 3a9b925f44
gnu: nomad-optimizer: Remove input labels.
* gnu/packages/maths.scm (nomad-optimizer)[native-inputs]: Remove
labels.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-19 12:29:44 +02:00
Paul A. Patience d483dbe0fa
gnu: gmsh: Update to 4.9.5.
* gnu/packages/maths.scm (gmsh): Update to 4.9.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-19 12:29:44 +02:00
Paul A. Patience 267176babc
gnu: asymptote: Update to 2.80.
* gnu/packages/plotutils.scm (asymptote): Update to 2.80.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-19 12:29:43 +02:00
Paul A. Patience 7488c73dd2
gnu: gnuplot: Update to 5.4.3.
* gnu/packages/maths.scm (gnuplot): Update to 5.4.3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-19 12:29:43 +02:00
Ludovic Courtès f95c037b79
services: yggdrasil: Tweak description.
* gnu/services/networking.scm (yggdrasil-service-type)[description]: Add
@command markup.
2022-04-19 12:29:43 +02:00
Jonathan Brielmaier b24961717b
gnu: nheko: Update to 0.9.3.
* gnu/packages/messaging.scm (nheko): Update to 0.9.3.
2022-04-19 12:11:08 +02:00
Ludovic Courtès 6b677f4299
services: ipfs: Adjust for Shepherd 0.9.
This is a followup to e1f0c88ea2.

* gnu/services/networking.scm (%ipfs-activation)[shepherd&co]: New
variable.
[container-gexp]: Use it.
2022-04-18 23:26:23 +02:00
Michael Rohleder f2239f3b95
gnu: emacs-chess: Fix path to pieces.
* gnu/packages/emacs-xyz.scm (emacs-chess)[arguments]: Fix path to pieces in
phase install-pieces.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-18 23:25:18 +02:00
Peter Polidoro 283088f7b1
gnu: Add python-sre-yield.
* gnu/packages/python-xyz.scm (python-sre-yield): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-18 23:23:54 +02:00
Peter Polidoro fc2d94a3f9
gnu: Add python-ajsonrpc.
* gnu/packages/python-web.scm (python-ajsonrpc): New variable.
2022-04-18 23:17:11 +02:00
Peter Polidoro 2aa5329023
gnu: Add python-quart.
* gnu/packages/python-web.scm (python-quart): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-18 23:14:37 +02:00
jgart a76c879f14
gnu: janet: Update to 1.21.1.
* gnu/packages/lisp.scm (janet): Update to 1.21.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-18 23:09:39 +02:00
Michael Rohleder 81ba7e6a45
gnu: mousepad: Update to 0.5.9.
* gnu/packages/xfce.scm (mousepad): Update to 0.5.9.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-18 23:08:11 +02:00
Michael Rohleder 355982a3f5
gnu: orage: Update to 4.16.0.
* gnu/packages/xfce.scm (orage): Update to 4.16.0.
[arguments]: Remove unneeded phase fix-build-with-libical3.
[native-inputs]: Add glib:bin for dbus-binding-tool.
[inputs]: Add dbus-glib for dbus support, libxfce4ui.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-18 23:07:55 +02:00
Felix Gruber 617d8a836f
gnu: Remove python-pyyaml-for-awscli.
* gnu/packages/python-xyz.scm (python-pyyaml-for-awscli): Remove
  variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-18 23:02:39 +02:00
Felix Gruber 4810100db6
gnu: Remove python-botocore-for-awscli.
* gnu/packages/python-xyz.scm (python-botocore-for-awscli): Remove
  variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-18 23:02:35 +02:00
Felix Gruber 7cf080aa71
gnu: awscli: Update to 1.22.90.
* gnu/packages/python-web.scm (awscli): Update to 1.22.90.
[arguments] Use search-input-file to find groff.
[inputs]: Replace python-botocore-for-awscli with python-botocore.
Add groff.
[native-inputs]: Remove groff.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-18 23:02:29 +02:00
Felix Gruber b0ec23afb7
gnu: python-jmespath: Update to 1.0.0.
* gnu/packages/python-xyz.scm (python-jmespath): Update to 1.0.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-18 23:02:23 +02:00
Ludovic Courtès 5389c5ea57
gnu: nss-certs: Support cross-compilation.
Reported by phodina <phodina@protonmail.com>.

* gnu/packages/certs.scm (nss-certs)[arguments]: In 'install' phase, do
not refer to '%output' when cross-compiling.
2022-04-18 22:58:06 +02:00
Petr Hodina 902099a8c0
gnu: ntp: Support cross-compilation.
* gnu/packages/ntp.scm (ntp)[arguments]: Add configuration flag.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-04-18 22:57:18 +02:00
Danny Milosavljevic 237d90a780
gnu: openjdk17: Make big cursors work.
* gnu/packages/java.scm (openjdk17)[source]: Add patch.
2022-04-18 12:59:04 +02:00
Danny Milosavljevic aa01b37ef6
gnu: openjdk16: Make big cursors work.
* gnu/packages/java.scm (openjdk16)[source]: Add patch.
2022-04-18 12:59:04 +02:00
Danny Milosavljevic f4dd7bf94e
gnu: openjdk15: Make big cursors work.
* gnu/packages/patches/openjdk-15-xcursor-no-dynamic.patch: New file.
* gnu/local.mk (dist_patch_DATA):  Add it.
* gnu/packages/java.scm (openjdk15)[source]: Add it.
2022-04-18 12:58:57 +02:00
jgart b629b30269
gnu: Add cl-ipfs-api2.
* gnu/packages/lisp-xyz.scm (cl-ipfs-api2, ecl-cl-ipfs-api2,
  sbcl-cl-ipfs-api2): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-18 09:26:36 +02:00
Leo Famulari 31f42393e8
gnu: Mutt: Update to 2.2.3 [fixes CVE-2022-1328].
https://gitlab.com/muttmua/mutt/-/issues/404

* gnu/packages/mail.scm (mutt): Update to 2.2.3.
2022-04-18 00:24:01 -04:00
Greg Hogan 93f0b31a99
gnu: ccache: Update to 4.6.
* gnu/packages/ccache.scm (ccache): Update to 4.6.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-04-17 17:59:23 +03:00
Raghav Gururajan e5174200c4
gnu: gnucash: Update to 4.10.
Variables gnucash and gnucash-docs have to be updated together.

* gnu/packages/gnucash.scm (gnucash)[version]: Update to 4.10.
(gnucash-docs)[version]: Update to 4.10.
[build-system]: Migrate from gnu to cmake.
[arguments]: Disable tests.
2022-04-17 05:03:00 -04:00
Leo Famulari 0c89fe9e17
gnu: linux-libre 4.19: Update to 4.19.238.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.238.
(linux-libre-4.19-pristine-source): Update hash.
2022-04-16 11:27:50 -04:00
Leo Famulari d5adbf6c9f
gnu: linux-libre 5.4: Update to 5.4.189.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.189.
(linux-libre-5.4-pristine-source): Update hash.
2022-04-16 11:27:44 -04:00
Guillaume Le Vaillant 7eb9176a6e
gnu: bitcoin-unlimited: Update to 1.10.0.0.
* gnu/packages/finance.scm (bitcoin-unlimited): Update to 1.10.0.0.
  [arguments]: Update 'fix-tests' phase.
2022-04-16 11:49:48 +02:00
Guillaume Le Vaillant 4bd3fdda63
gnu: electrum: Update to 4.2.1.
* gnu/packages/finance.scm (electrum): Update to 4.2.1.
  [inputs]: Replace python-aiorpcx-0.18 by python-aiorpcx. Add zbar.
2022-04-16 11:26:48 +02:00
Guillaume Le Vaillant 6be6ea4276
gnu: electron-cash: Update to 4.2.7.
* gnu/packages/finance.scm (electron-cash): Update to 4.2.7.
2022-04-16 11:12:17 +02:00
Dominic Martinez 6db5787120
gnu: emacs-message-view-patch: Update to 0.2.0-40bc2e5
* gnu/packages/emacs-xyz (emacs-message-view-patch): Update it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:03 +02:00
Dominic Martinez c6c0c985d3
gnu: emacs-mu4e-patch: Rename to emacs-message-view-patch
The name was changed upstream to reflect that this extension works for both
mu4e and gnus.

* gnu/packages/emacs-xyz.scm (emacs-mu4e-patch): Deprecate it.
(emacs-message-view-patch): Renamed from emacs-mu4e-patch. Description,
synopsis, and inputs adjusted to reflect that mu4e is not required.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:03 +02:00
Michael Rohleder 6995d68435
gnu: xfce4-diskperf-plugin: Update to 2.7.0.
* gnu/packages/xfce.scm (xfce4-diskperf-plugin): Update to 2.7.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:03 +02:00
Michael Rohleder 3b2ea81894
gnu: elementary-xfce-icon-theme: Update to 0.16.
* gnu/packages/xfce.scm (elementary-xfce-icon-theme): Update to 0.16.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:02 +02:00
Zhu Zihao 0495819926
gnu: xfce4-terminal: Update to 1.0.0.
* gnu/packages/xfce.scm (xfce4-terminal): Update to 1.0.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:02 +02:00
Vincent Prat 4ed02d571a
gnu: Add python-verspec.
* gnu/packages/python.xyz.scm (python-verspec): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:02 +02:00
Vincent Prat 304c6b395c
gnu: Add python-shtab.
* gnu/packages/python-xyz.scm (python-shtab): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:02 +02:00
Ludovic Courtès 6e174c4edd
gnu: shepherd: Support cross-compilation.
Reported by phodina <phodina@protonmail.com>.

* gnu/packages/admin.scm (shepherd-0.9)[arguments]: New field.
[native-inputs]: Add GUILE-FIBERS-1.1.
2022-04-15 19:13:02 +02:00
B. Wilson 35a1de1a4c
gnu: mblaze: Offer contrib executables.
* gnu/packages/mail.scm (mblaze)[outputs, inputs]: New fields.
[arguments]: Add #:modules.  Add 'install-contrib' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:02 +02:00
Chadwain Holness ff3355dcbf
gnu: streamlink: Update to 3.2.0.
* gnu/packages/video.scm (streamlink): Update to 3.2.0.
[inputs]: Add python-lxml and python-pycountry, remove python-iso3166 and python-iso639.
[arguments]<#:phases>{check}: Use pytest.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:01 +02:00
Ludovic Courtès ee617c4800
gnu: python-lxml: Add 4.7.1.
* gnu/packages/xml.scm (python-lxml-4.7): New variable.
2022-04-15 19:13:01 +02:00
André A. Gomes 179a949e60
gnu: cl-nfiles: Update to 0.4.0.
* gnu/packages/lisp-xyz.scm (sbcl-nfiles): Update to 0.4.0.
  [inputs]: Add sbcl-quri.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-15 17:09:03 +02:00
Efraim Flashner 53a8e8fd6c
gnu: python-hmmlearn: Remove cythonized file.
* gnu/packages/machine-learning.scm (python-hmmlearn)[source]: Add
snippet to remove cythonized file.
2022-04-15 02:11:03 +03:00
Efraim Flashner ac5f070631
gnu: python-aiohttp: Remove cythonized files.
* gnu/packages/python-web.scm (python-aiohttp)[source]: Add snippet to
remove cythonized files.
2022-04-14 23:30:27 +03:00
Efraim Flashner 802c94034c
gnu: python-pywavelets: Remove cythonized files.
* gnu/packages/python-xyz.scm (python-pywavelets)[source]: Add snippet
to remove cythonized files.
[native-inputs]: Add python-cython.
2022-04-14 23:23:18 +03:00
Efraim Flashner 6083372f61
gnu: python-igraph: Update to 0.9.10.
* gnu/packages/graph.scm (python-igraph): Update to 0.9.10.
2022-04-14 22:57:49 +03:00
Efraim Flashner d6a5bdf000
gnu: igraph: Update to 0.9.8.
* gnu/packages/graph.scm (igraph): Update to 0.9.8.
2022-04-14 22:57:06 +03:00
Efraim Flashner 7034746e15
gnu: scregseg: Remove cythonized file.
* gnu/packages/bioinformatics.scm (scregseg)[source]: Add snippet to
remove cythonized file.
2022-04-14 22:55:33 +03:00
Paul A. Patience 5059e7f01e
gnu: cl-py4cl: Update to 0.0.0-1.2f2a008.
* gnu/packages/lisp-xyz.scm (sbcl-py4cl): Update to 0.0.0-1.2f2a008.
  [arguments]<#:phases>: Adjust substitutions to renamed files.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-14 20:31:59 +02:00
jgart 8f5b2f0693
gnu: Add emacs-org-modern.
* gnu/packages/emacs-xyz.scm (emacs-org-modern): New variable.

Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
2022-04-14 11:34:03 -04:00
Paul A. Patience 0ddca9d682
gnu: Add cl-numpy-file-format.
* gnu/packages/lisp-xyz.scm (cl-numpy-file-format, ecl-numpy-file-format,
  sbcl-numpy-file-format): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-14 16:33:52 +02:00
Foo Chuan Wei 0f6aaf2f62
gnu: cl-who: Update to 1.1.4-3.07dafe9.
* gnu/packages/lisp-xyz.scm (sbcl-cl-who): Update to 1.1.4-3.07dafe9.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-14 16:33:52 +02:00
Leo Famulari 6bf6529792
gnu: linux-libre 5.10: Update to 5.10.111.
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.111.
(linux-libre-5.10-pristine-source): Update hash.
2022-04-14 10:22:54 -04:00
Leo Famulari 0b20c8e071
gnu: linux-libre 5.15: Update to 5.15.34.
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.34.
(linux-libre-5.15-pristine-source): Update hash.
2022-04-14 10:22:54 -04:00
Leo Famulari 1b7f05f72c
gnu: linux-libre: Update to 5.16.20.
* gnu/packages/linux.scm (linux-libre-5.16-version): Update to 5.16.20.
(linux-libre-5.16-pristine-source): Update hash.
2022-04-14 10:22:54 -04:00
Leo Famulari 0a3fee824b
gnu: linux-libre 5.17: Update to 5.17.3.
* gnu/packages/linux.scm (linux-libre-5.17-version): Update to 5.17.3.
(linux-libre-5.17-pristine-source): Update hash.
2022-04-14 10:22:54 -04:00
Leo Famulari aaf4b08c6b
gnu: Update linux-libre 5.17 configuration files.
This option that adds new hardware support appeared after the 5.17 release.

* gnu/packages/aux-files/linux-libre/5.17-arm.conf,
gnu/packages/aux-files/linux-libre/5.17-arm64.conf,
gnu/packages/aux-files/linux-libre/5.17-i686.conf,
gnu/packages/aux-files/linux-libre/5.17-x86_64.conf: Enable support for Realtek
Ethernet switch chips.
2022-04-14 10:22:54 -04:00
Mădălin Ionel Patrașcu b0dd06bd0c
gnu: Add r-xcir.
* gnu/packages/bioconductor.scm (r-xcir): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 14:53:17 +02:00
Ludovic Courtès 16372cb347
gnu: sundials: Remove input labels.
* gnu/packages/maths.scm (sundials)[native-inputs, inputs]: Remove labels.
(sundials-openmpi)[inputs]: Remove labels.
2022-04-14 14:48:21 +02:00
Ludovic Courtès 61bcd648ca
gnu: sundials: Update to 6.1.1.
* gnu/packages/maths.scm (sundials): Update to 6.1.1.
[inputs]: Add PETSC.
(sundials-openmpi)[inputs]: Remove PETSC.
[arguments]: Remove now unnecessary flags.  Change "MPI_ENABLE" to "ENABLE_MPI".
2022-04-14 14:48:21 +02:00
Ludovic Courtès 1f82602153
gnu: guile-fibers@1.1: Support cross-compilation.
Fixes <https://issues.guix.gnu.org/54793>.
Reported by Mathieu Othacehe <othacehe@gnu.org>.

* gnu/packages/guile-xyz.scm (guile-fibers-1.1)[arguments]: Add
'support-cross-compilation' phase.
2022-04-14 14:48:20 +02:00
Ricardo Wurmus 919cecd00b
gnu: r-illuminahumanmethylation450kanno-ilmn12-hg19: Move to annotation section.
* gnu/packages/bioconductor.scm (r-illuminahumanmethylation450kanno-ilmn12-hg19):
Move this variable up to the annotation section.
2022-04-14 13:38:30 +02:00
Ricardo Wurmus 03009f2a2b
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Move to annotation section.
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): Move
this variable up to the annotation section.
2022-04-14 13:37:23 +02:00
Ricardo Wurmus c8a6e4abbc
gnu: r-chromvarmotifs: Move to (gnu packages bioinformatics).
* gnu/packages/bioconductor.scm (r-chromvarmotifs): Move this variable from here...
* gnu/packages/bioinformatics.scm (r-chromvarmotifs): ...to here.
2022-04-14 13:35:22 +02:00
Ricardo Wurmus aafd0d2309
gnu: r-absseq: Move out of experiments section.
* gnu/packages/bioconductor.scm (r-absseq): Move definition out of experiments
section.
2022-04-14 13:34:11 +02:00
Ricardo Wurmus ed3697c040
gnu: r-abarray: Move out of experiments section.
* gnu/packages/bioconductor.scm (r-abarray): Move definition out of
experiments section.
2022-04-14 13:32:52 +02:00
Ricardo Wurmus 67941709e2
gnu: r-aneufinder: Move to packages section.
* gnu/packages/bioconductor.scm (r-aneufinder): Move this definition out of
the section for Bioconductor experiments packages.
2022-04-14 13:31:33 +02:00
Mădălin Ionel Patrașcu cab6657094
gnu: Add r-absseq.
* gnu/packages/bioconductor.scm (r-absseq): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 13:29:48 +02:00
Mădălin Ionel Patrașcu a436582124
gnu: Add r-abarray.
* gnu/packages/bioconductor.scm (r-abarray): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 13:20:07 +02:00
Mădălin Ionel Patrașcu 1b2b1c30e2
gnu: Add r-acde.
* gnu/packages/bioconductor.scm (r-acde): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 13:18:07 +02:00
Mădălin Ionel Patrașcu dd9d26bce6
gnu: Add r-wppi.
* gnu/packages/bioconductor.scm (r-wppi): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 12:47:24 +02:00
Mădălin Ionel Patrașcu 55be5fc400
gnu: Add r-acme.
* gnu/packages/bioconductor.scm (r-acme): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 12:33:27 +02:00
Mădălin Ionel Patrașcu 08df30f232
gnu: Add r-acgh.
* gnu/packages/bioconductor.scm (r-acgh): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 11:59:15 +02:00
Attila Lendvai 50046194a2
gnu: libfprint: Fix build, add python for the tests.
* gnu/packages/freedesktop.scm (libfprint)[native-inputs]: Add python-minimal
as it's needed by the tests.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 11:54:11 +02:00
Mădălin Ionel Patrașcu 839241501a
gnu: Add r-ace.
* gnu/packages/bioconductor.scm (r-ace): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 11:50:34 +02:00
Mădălin Ionel Patrașcu 7d990e775e
gnu: r-catalyst: Update description.
* gnu/packages/bioconductor.scm (r-catalyst)[description]: Add Texinfo markup
and clarify a sentence.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 11:43:24 +02:00
Ricardo Wurmus d85146c9df
gnu: r-tcgabiolinks: Update to 2.22.4.
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.22.4.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus 5acc125305
gnu: r-omnipathr: Update to 3.2.8.
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.2.8.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus 2def20d3ae
gnu: r-bgeedb: Update to 2.20.1.
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.20.1.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus c7cb92e494
gnu: r-gviz: Update to 1.38.4.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.38.4.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus 3c7e190eea
gnu: r-catalyst: Update to 1.18.1.
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.18.1.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus 3e07fbf32a
gnu: r-mscoreutils: Update to 1.6.2.
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.6.2.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus 40735701a8
gnu: r-singler: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-singler): Update to 1.8.1.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus 2a71a7b961
gnu: r-s4vectors: Update to 0.32.4.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.4.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus 51ddaf48e8
gnu: r-experimenthub: Update to 2.2.1.
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.2.1.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus c9e925d444
gnu: r-universalmotif: Update to 1.12.4.
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.12.4.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus eadb1f53e9
gnu: r-variancepartition: Update to 1.24.1.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.24.1.
[propagated-inputs]: Add r-aod, r-rdpack, and r-rhpcblasctl.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus 9950ed71fc
gnu: r-cytolib: Update to 2.6.2.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.6.2.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus 0861d4fff5
gnu: r-rsubread: Update to 2.8.2.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.8.2.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus cb30400097
gnu: r-ropls: Update to 1.26.4.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.26.4.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus 0c478f50f2
gnu: r-birewire: Update to 3.26.5.
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.26.5.
[propagated-inputs]: Remove r-tsne; add r-rtsne.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus b446be46ba
gnu: r-biocfilecache: Update to 2.2.1.
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.2.1.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus 5576a98b6a
gnu: r-massspecwavelet: Update to 1.60.1.
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.60.1.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus 6f2d89fb40
gnu: r-atacseqqc: Update to 1.18.1.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.18.1.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus 88ed3fc340
gnu: r-genomicscores: Update to 2.6.1.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.6.1.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus e129f579f5
gnu: r-clusterprofiler: Update to 4.2.2.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.2.2.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus 21037105ac
gnu: r-enrichplot: Update to 1.14.2.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.14.2.
2022-04-14 11:29:38 +02:00
Ricardo Wurmus f8a38e8380
gnu: r-geoquery: Update to 2.62.2.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.62.2.
2022-04-14 11:29:38 +02:00
Ricardo Wurmus fe6a8b4338
gnu: r-karyoploter: Update to 1.20.3.
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.20.3.
2022-04-14 11:29:38 +02:00
Ricardo Wurmus 84c0ec875c
gnu: r-destiny: Update to 3.8.1.
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.8.1.
[native-inputs]: Add r-knitr.
2022-04-14 11:29:38 +02:00
Ricardo Wurmus d625f52bca
gnu: r-chippeakanno: Update to 3.28.1.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.28.1.
2022-04-14 11:29:38 +02:00
Ricardo Wurmus f7d7ba3613
gnu: r-diffbind: Update to 3.4.11.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.4.11.
2022-04-14 11:29:38 +02:00
Ricardo Wurmus cf46f2c331
gnu: r-systempiper: Update to 2.0.8.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.8.
2022-04-14 11:29:38 +02:00
Ricardo Wurmus 43053e08da
gnu: r-stringdb: Update to 2.6.5.
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.6.5.
2022-04-14 11:29:38 +02:00
Ricardo Wurmus a3ddba54fd
gnu: r-slingshot: Update to 2.2.1.
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.2.1.
2022-04-14 11:29:38 +02:00
Ricardo Wurmus 6dad28d221
gnu: r-rhdf5: Update to 2.38.1.
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.38.1.
2022-04-14 11:29:38 +02:00
Ricardo Wurmus 30027f837d
gnu: r-regioner: Update to 1.26.1.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.26.1.
2022-04-14 11:29:37 +02:00
Ricardo Wurmus 06d13cf4b0
gnu: r-msnbase: Update to 2.20.4.
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.4.
2022-04-14 11:29:37 +02:00
Ricardo Wurmus e586613384
gnu: r-mutationalpatterns: Update to 3.4.1.
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.4.1.
2022-04-14 11:29:37 +02:00
Ricardo Wurmus 78f7de977a
gnu: r-limma: Update to 3.50.3.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.50.3.
2022-04-14 11:29:37 +02:00
Ricardo Wurmus 68c1c989b6
gnu: r-genomicfeatures: Update to 1.46.5.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.46.5.
2022-04-14 11:29:37 +02:00
Ricardo Wurmus 455636fecd
gnu: r-genomeinfodb: Update to 1.30.1.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.30.1.
2022-04-14 11:29:37 +02:00
Ricardo Wurmus 9000c8acc2
gnu: r-ensembldb: Update to 2.18.4.
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.4.
2022-04-14 11:29:37 +02:00
Ricardo Wurmus e4816bcaed
gnu: r-biomart: Update to 2.50.3.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.50.3.
2022-04-14 11:29:37 +02:00
Ricardo Wurmus ac67d0a467
gnu: r-annotationhub: Update to 3.2.2.
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.2.2.
2022-04-14 11:29:37 +02:00
Ricardo Wurmus 4353404e21
gnu: Add r-aod.
* gnu/packages/cran.scm (r-aod): New variable.
2022-04-14 11:29:37 +02:00
Ricardo Wurmus f6bc281cd7
gnu: r-tricycle: Move out of annotation packages.
* gnu/packages/bioconductor.scm (r-tricycle): Move definition out of the
section containing annotation packages.
2022-04-14 06:55:20 +02:00
Efraim Flashner 5743d50583
gnu: gama: Update to 2.18.
* gnu/packages/gps.scm (gama): Update to 2.18.
2022-04-13 23:53:18 +03:00
Eric Bavier b5e32d9620
gnu: idris: Fixes test failure.
* gnu/packages/patches/idris-test-ffi008.patch: New file.
* gnu/packages/idris.scm (source): Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
2022-04-13 09:48:04 -05:00
Leo Famulari 8d82d817bc
gnu: nginx: Update to 1.21.6.
* gnu/packages/web.scm (nginx): Update to 1.21.6.
(nginx-documentation): Update to 1.21.6-2829-1ecf0e0526da.
2022-04-13 10:30:21 -04:00
Foo Chuan Wei 4996104189
gnu: Add cl-simple-routes.
* gnu/packages/lisp-xyz.scm (cl-simple-routes, ecl-simple-routes,
  sbcl-simple-routes): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-13 13:42:35 +02:00
Ricardo Wurmus fc89b50b7b
gnu: awscli: Do not propagate inputs.
* gnu/packages/python-web.scm (awscli)[propagated-inputs]: Move all inputs
from here...
[inputs]: ...to here.
2022-04-13 09:26:47 +02:00
Ricardo Wurmus 21cd4c704e
gnu: awscli: Use PyYAML 6.
This should be fine because all uses of yaml.load supply the now mandatory
loader argument.

* gnu/packages/python-web.scm (awscli)[arguments]: Add phase
'use-recent-pyyaml.
[propagated-inputs]: Replace python-pyyaml-for-awscli with python-pyyaml.
2022-04-13 09:25:13 +02:00
Maxim Cournoyer 7bd5394bf8
gnu: wpewebkit: Update to 2.36.0.
* gnu/packages/webkit.scm (%webkit-version): New variable.
(wpewebkit): Update to 2.36.0, rewriting package to inherit from webkitgtk.
(webkitgtk)[source]: Use %webkit-version, and adjust definition to match that
of wpewebkit.
2022-04-12 23:18:12 -04:00
Maxim Cournoyer 4ec7aac483
gnu: webkitgtk: Update to 2.36.0 and enable extra features.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.36.0.
[source]: Remove the webkitgtk-bind-all-fonts.patch and
webkitgtk-canonicalize-paths.patch patches.
[arguments]: Use gexp.
[tests?]: Update comment.
[build-type]: Add explanatory comment.
[configure-flags]: Enable gamepad support,  remove nonexistent
USE_SYSTEMD option and enable mini-browser.
[phases]{do-not-disable-new-dtags}: New phase.
{help-cmake-find-elogind}: Likewise.
{patch-gtk-doc-scan}: Simplify to avoid for-each.  Locate docbookx.dtd via
search-input-file.
{embed-absolute-wpebackend-reference}: Use search-input-file.
[native-inputs]: Use new style.
[inputs]: Likewise.  Add elogind and libmanette.
[description]: Adjust indentation.
(webkitgtk-with-libsoup2): Re-format comment, fixing spacing.
[configure-flags]: Use gexp.
[propagated-inputs]: Use modify-inputs to replace libsoup with
libsoup-minimal-2.
* gnu/packages/patches/webkitgtk-bind-all-fonts.patch: Delete file.
* gnu/packages/patches/webkitgtk-canonicalize-paths.patch: Likewise.
* gnu/local.mk: De-register them.
2022-04-12 23:18:12 -04:00
Maxim Cournoyer 322e23e600
gnu: woff2: Propagate brotli.
* gnu/packages/fontutils.scm (woff2)[phases]: Delete trailing #t.
[inputs]: Move brotli to ...
[propagated-inputs]: ... here.
2022-04-12 23:18:12 -04:00
Leo Famulari a62f0f6d85
gnu: linux-libre 4.9: Update to 4.9.310.
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.310.
(linux-libre-4.9-pristine-source): Update hash.
2022-04-12 22:39:16 -04:00
terramorpha 950f3e4f98
gnu: Add smtpmail.
* gnu/packages/mail.scm (smtpmail): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-12 23:55:14 +02:00
Olivier Dion 1885f8035a
gnu: Add librseq.
* gnu/packages/engineering.scm (librseq): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-12 23:42:40 +02:00
Leo Nikkilä e1f0c88ea2
shepherd: Add #:supplementary-groups.
To support the argument introduced in Shepherd 0.9.0 when defining
container-bound services.

* gnu/build/shepherd.scm (exec-command*)
(make-forkexec-constructor/container): Add '#:supplementary-groups'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-12 23:40:44 +02:00
Andrew Tropin 8805c7eab1
home: shepherd: Prevent launching the second instance.
Fixes <https://issues.guix.gnu.org/54545>.

* gnu/home/services/shepherd.scm (launch-shepherd-gexp): Launch shepherd
if and only if its socket file does not already exist.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-12 23:30:09 +02:00
Ricardo Wurmus 6a69e41c17
gnu: python-moto: Update to 3.1.4.
* gnu/packages/python-xyz.scm (python-moto): Update to 3.1.4.
[arguments]: Adjust disabled tests.
[native-inputs]: Remove python-parameterized; add python-graphql-core.
[propagated-inputs]: Remove python-boto, python-idna, python-mock, and
python-six; add python-importlib-metadata and python-markupsafe.
2022-04-12 23:12:22 +02:00
Ricardo Wurmus 2c37975fcc
gnu: awscli: Use older version of botocore.
* gnu/packages/python-web.scm (awscli)[propagated-inputs]: Replace
python-botocore with python-botocore-for-awscli.
2022-04-12 23:12:22 +02:00
Ricardo Wurmus e8a99abf41
gnu: python-botocore: Update to 1.24.35.
* gnu/packages/python-xyz.scm (python-botocore): Update to 1.24.35.
2022-04-12 23:12:22 +02:00
Ricardo Wurmus 8a6c012deb
gnu: python-boto3: Update to 1.21.35.
* gnu/packages/python-xyz.scm (python-boto3): Update to 1.21.35.
[arguments]: Override 'check phase.
2022-04-12 23:12:22 +02:00
Ricardo Wurmus 9320410d76
gnu: Add python-botocore-for-awscli.
* gnu/packages/python-xyz.scm (python-botocore-for-awscli): New variable.
2022-04-12 23:12:22 +02:00
Ricardo Wurmus 797478f77b
gnu: awscli: Use older pyyaml.
* gnu/packages/python-web.scm (awscli)[propagated-inputs]: Replace
python-pyyaml with python-pyyaml-for-awscli.
2022-04-12 23:12:22 +02:00
Ricardo Wurmus 7fcb16e9d4
gnu: Add python-pyyaml-for-awscli.
* gnu/packages/python-xyz.scm (python-pyyaml-for-awscli): New variable.
2022-04-12 23:12:22 +02:00
Liliana Marie Prikler 42679e3f81
services: Replace murmur-service-type with mumble-server-service-type.
* gnu/services/telephony.scm (murmur-configuration, make-murmur-configuration)
(murmur-configuration?, murmur-configuration-package)
(murmur-configuration-user, murmur-configuration-group)
(murmur-configuration-port, murmur-configuration-welcome-text)
(murmur-configuration-server-password)
(murmur-configuration-max-users)
(murmur-configuration-max-user-bandwidth)
(murmur-configuration-database-file)
(murmur-configuration-log-file, murmur-configuration-pid-file)
(murmur-configuration-autoban-attempts)
(murmur-configuration-autoban-timeframe)
(murmur-configuration-autoban-time)
(murmur-configuration-opus-threshold)
(murmur-configuration-channel-nesting-limit)
(murmur-configuration-channelname-regex)
(murmur-configuration-username-regex)
(murmur-configuration-test-message-length)
(murmur-configuration-image-message-length)
(murmur-configuration-cert-required?)
(murmur-configuration-remember-channel?)
(murmur-configuration-allow-html?)
(murmur-configuration-allow-ping?)
(murmur-configuration-bonjour?)
(murmur-configuration-send-version?)
(murmur-configuration-log-days)
(murmur-configuration-obfuscate-ips?)
(murmur-configuration-ssl-cert murmur-configuration-ssl-key)
(murmur-configuration-ssl-dh-params murmur-configuration-ssl-ciphers)
(murmur-configuration-public-registration)
(murmur-configuration-file)
(murmur-public-registration-configuration)
(make-murmur-public-registration-configuration)
(murmur-public-registration-configuration?)
(murmur-public-registration-configuration-name)
(murmur-public-registration-configuration-url)
(murmur-public-registration-configuration-password)
(murmur-public-registration-configuration-hostname)
(murmur-service-type): Add deprecation alias and rename to ...
(mumble-server-configuration, make-mumble-server-configuration)
(mumble-server-configuration?, mumble-server-configuration-package)
(mumble-server-configuration-user, mumble-server-configuration-group)
(mumble-server-configuration-port, mumble-server-configuration-welcome-text)
(mumble-server-configuration-server-password)
(mumble-server-configuration-max-users)
(mumble-server-configuration-max-user-bandwidth)
(mumble-server-configuration-database-file)
(mumble-server-configuration-log-file, mumble-server-configuration-pid-file)
(mumble-server-configuration-autoban-attempts)
(mumble-server-configuration-autoban-timeframe)
(mumble-server-configuration-autoban-time)
(mumble-server-configuration-opus-threshold)
(mumble-server-configuration-channel-nesting-limit)
(mumble-server-configuration-channelname-regex)
(mumble-server-configuration-username-regex)
(mumble-server-configuration-test-message-length)
(mumble-server-configuration-image-message-length)
(mumble-server-configuration-cert-required?)
(mumble-server-configuration-remember-channel?)
(mumble-server-configuration-allow-html?)
(mumble-server-configuration-allow-ping?)
(mumble-server-configuration-bonjour?)
(mumble-server-configuration-send-version?)
(mumble-server-configuration-log-days)
(mumble-server-configuration-obfuscate-ips?)
(mumble-server-configuration-ssl-cert mumble-server-configuration-ssl-key)
(mumble-server-configuration-ssl-dh-params) (mumble-server-configuration-ssl-ciphers)
(mumble-server-configuration-public-registration)
(mumble-server-configuration-file)
(mumble-server-public-registration-configuration)
(make-mumble-server-public-registration-configuration)
(mumble-server-public-registration-configuration?)
(mumble-server-public-registration-configuration-name)
(mumble-server-public-registration-configuration-url)
(mumble-server-public-registration-configuration-password)
(mumble-server-public-registration-configuration-hostname)
(mumble-server-service-type): ... these.
* doc/guix.texi ("Murmur (VoIP server)"): Rename to ...
("Mumble server"): ... this.  Adjust documentation accordingly.
2022-04-12 20:32:32 +02:00
Liliana Marie Prikler 1be7f43756
gnu: libressl: Update to 3.3.6.
* gnu/packages/tls.scm (libressl): Update to 3.3.6.
2022-04-12 20:32:31 +02:00
Roman Riabenko b0f477b8a3
gnu: games: Add robotfindskitten.
* gnu/packages/games.scm (robotfindskitten): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-04-12 20:31:33 +02:00
Ricardo Wurmus 8550976832
gnu: r-rbowtie: Fix build on architectures other than x86_64.
* gnu/packages/bioconductor.scm (r-rbowtie)[arguments]: Disable use of popcnt
on systems other than x86_64.
2022-04-12 16:00:01 +02:00
Ricardo Wurmus dabd0d793c
gnu: r-rlrsim: Update to 3.1-8.
* gnu/packages/statistics.scm (r-rlrsim): Update to 3.1-8.
2022-04-12 16:00:01 +02:00
Ricardo Wurmus 59e94c9bee
gnu: r-norm: Update to 1.0-10.0.
* gnu/packages/statistics.scm (r-norm): Update to 1.0-10.0.
2022-04-12 16:00:01 +02:00
Ricardo Wurmus a12b85175b
gnu: r-puniform: Update to 0.2.5.
* gnu/packages/statistics.scm (r-puniform): Update to 0.2.5.
2022-04-12 16:00:01 +02:00
Ricardo Wurmus 7b23d24b89
gnu: r-cairo: Update to 1.5-15.
* gnu/packages/statistics.scm (r-cairo): Update to 1.5-15.
2022-04-12 16:00:01 +02:00
Ricardo Wurmus a5b0f1db21
gnu: r-tsne: Update to 0.1-3.1.
* gnu/packages/statistics.scm (r-tsne): Update to 0.1-3.1.
2022-04-12 16:00:01 +02:00
Ricardo Wurmus d3daace423
gnu: r-lme4: Update to 1.1-29.
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-29.
2022-04-12 16:00:01 +02:00
Ricardo Wurmus a2ef90890d
gnu: r-rcppeigen: Update to 0.3.3.9.2.
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.9.2.
2022-04-12 16:00:01 +02:00
Ricardo Wurmus dbfb40af46
gnu: r-robustbase: Update to 0.95-0.
* gnu/packages/statistics.scm (r-robustbase): Update to 0.95-0.
2022-04-12 16:00:01 +02:00
Ricardo Wurmus 2485a88d35
gnu: r-deoptimr: Update to 1.0-11.
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.0-11.
2022-04-12 16:00:01 +02:00
Ricardo Wurmus cbb5dfa4a3
gnu: r-sfsmisc: Update to 1.1-13.
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-13.
2022-04-12 16:00:01 +02:00
Ricardo Wurmus 39825e3c43
gnu: r-dt: Update to 0.22.
* gnu/packages/statistics.scm (r-dt): Update to 0.22.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus 76ee2cd049
gnu: r-segmented: Update to 1.4-1.
* gnu/packages/statistics.scm (r-segmented): Update to 1.4-1.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus 0ec1833c1f
gnu: r-rsqlite: Update to 2.2.12.
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.12.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus cea93b7781
gnu: r-blob: Update to 1.2.3.
* gnu/packages/statistics.scm (r-blob): Update to 1.2.3.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus 8b28ffca69
gnu: r-rprojroot: Update to 2.0.3.
* gnu/packages/statistics.scm (r-rprojroot): Update to 2.0.3.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus 7b9e39ca2a
gnu: r-rcpparmadillo: Update to 0.11.0.0.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.11.0.0.0.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus d9a0147b31
gnu: r-git2r: Update to 0.30.1.
* gnu/packages/statistics.scm (r-git2r): Update to 0.30.1.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus e4e5e9e71b
gnu: r-batchjobs: Update to 1.9.
* gnu/packages/statistics.scm (r-batchjobs): Update to 1.9.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus 3e3afecc54
gnu: r-testthat: Update to 3.1.3.
* gnu/packages/statistics.scm (r-testthat): Update to 3.1.3.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus b99c0c1c14
gnu: r-crayon: Update to 1.5.1.
* gnu/packages/statistics.scm (r-crayon): Update to 1.5.1.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus a8c2792365
gnu: r-knitr: Update to 1.38.
* gnu/packages/statistics.scm (r-knitr): Update to 1.38.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus 7b535eb49a
gnu: r-formatr: Update to 1.12.
* gnu/packages/statistics.scm (r-formatr): Update to 1.12.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus 587f307f1a
gnu: r-rcolorbrewer: Update to 1.1-3.
* gnu/packages/statistics.scm (r-rcolorbrewer): Update to 1.1-3.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus f3b1196da3
gnu: r-plyr: Update to 1.8.7.
* gnu/packages/statistics.scm (r-plyr): Update to 1.8.7.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus 54a8952627
gnu: r-magrittr: Update to 2.0.3.
* gnu/packages/statistics.scm (r-magrittr): Update to 2.0.3.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus 5e24960b4d
gnu: r-mgcv: Update to 1.8-40.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-40.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus 5eb4959176
gnu: r-nlme: Update to 3.1-157.
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-157.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus bac7085564
gnu: r-matrix: Update to 1.4-1.
* gnu/packages/statistics.scm (r-matrix): Update to 1.4-1.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus 0790627649
gnu: r-cluster: Update to 2.1.3.
* gnu/packages/statistics.scm (r-cluster): Update to 2.1.3.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus 7901b3bfdd
gnu: r-mass: Update to 7.3-56.
* gnu/packages/statistics.scm (r-mass): Update to 7.3-56.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus 962ead1990
gnu: r-cccd: Update to 1.6.
* gnu/packages/cran.scm (r-cccd): Update to 1.6.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus 448dab304d
gnu: r-paws-common: Update to 0.3.17.
* gnu/packages/cran.scm (r-paws-common): Update to 0.3.17.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus 3283de189b
gnu: r-exactextractr: Update to 0.8.1.
* gnu/packages/cran.scm (r-exactextractr): Update to 0.8.1.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus 129297a4c3
gnu: r-tzdb: Update to 0.3.0.
* gnu/packages/cran.scm (r-tzdb): Update to 0.3.0.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus 3c382883c8
gnu: r-gsa: Update to 1.03.2.
* gnu/packages/cran.scm (r-gsa): Update to 1.03.2.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus 7c57ca79f6
gnu: r-antiword: Update to 1.3.1.
* gnu/packages/cran.scm (r-antiword): Update to 1.3.1.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus 691e7eb36e
gnu: r-vdiffr: Update to 1.0.4.
* gnu/packages/cran.scm (r-vdiffr): Update to 1.0.4.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus ae62ca894d
gnu: r-mlr3tuning: Update to 0.13.0.
* gnu/packages/cran.scm (r-mlr3tuning): Update to 0.13.0.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus d587f1d80d
gnu: r-bbotk: Update to 0.5.2.
* gnu/packages/cran.scm (r-bbotk): Update to 0.5.2.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus f1fa7890f6
gnu: r-densestbayes: Update to 1.0-2.1.
* gnu/packages/cran.scm (r-densestbayes): Update to 1.0-2.1.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus 5ef10806d5
gnu: r-mlecens: Update to 0.1-5.
* gnu/packages/cran.scm (r-mlecens): Update to 0.1-5.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus 3631b3fa1d
gnu: r-tidymodels: Update to 0.2.0.
* gnu/packages/cran.scm (r-tidymodels): Update to 0.2.0.
[native-inputs]: Remove r-rmarkdown and pandoc.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus a59fdbb4d5
gnu: r-parsnip: Update to 0.2.1.
* gnu/packages/cran.scm (r-parsnip): Update to 0.2.1.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus cbde43b6a8
gnu: r-workflowsets: Update to 0.2.1.
* gnu/packages/cran.scm (r-workflowsets): Update to 0.2.1.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus 47b471c09d
gnu: r-tune: Update to 0.2.0.
* gnu/packages/cran.scm (r-tune): Update to 0.2.0.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus 7bb560c024
gnu: r-dials: Update to 0.1.1.
* gnu/packages/cran.scm (r-dials): Update to 0.1.1.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus f7d26682a6
gnu: r-workflows: Update to 0.2.6.
* gnu/packages/cran.scm (r-workflows): Update to 0.2.6.
[propagated-inputs]: Remove r-ellipsis.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus 727540fba3
gnu: r-igraph: Update to 1.3.0.
* gnu/packages/cran.scm (r-igraph): Update to 1.3.0.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus 17eebeeffa
gnu: r-survmisc: Update to 0.5.6.
* gnu/packages/cran.scm (r-survmisc): Update to 0.5.6.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus d58d47061b
gnu: r-km-ci: Update to 0.5-6.
* gnu/packages/cran.scm (r-km-ci): Update to 0.5-6.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus 29d7a8dcc7
gnu: r-spatstat: Update to 2.3-4.
* gnu/packages/cran.scm (r-spatstat): Update to 2.3-4.
2022-04-12 15:59:58 +02:00