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85365 Commits (3ee7e8c5b9b44e948a9132870771c98f90eda79d)

Author SHA1 Message Date
Efraim Flashner ac5f070631
gnu: python-aiohttp: Remove cythonized files.
* gnu/packages/python-web.scm (python-aiohttp)[source]: Add snippet to
remove cythonized files.
2022-04-14 23:30:27 +03:00
Efraim Flashner 802c94034c
gnu: python-pywavelets: Remove cythonized files.
* gnu/packages/python-xyz.scm (python-pywavelets)[source]: Add snippet
to remove cythonized files.
[native-inputs]: Add python-cython.
2022-04-14 23:23:18 +03:00
Efraim Flashner 6083372f61
gnu: python-igraph: Update to 0.9.10.
* gnu/packages/graph.scm (python-igraph): Update to 0.9.10.
2022-04-14 22:57:49 +03:00
Efraim Flashner d6a5bdf000
gnu: igraph: Update to 0.9.8.
* gnu/packages/graph.scm (igraph): Update to 0.9.8.
2022-04-14 22:57:06 +03:00
Efraim Flashner 7034746e15
gnu: scregseg: Remove cythonized file.
* gnu/packages/bioinformatics.scm (scregseg)[source]: Add snippet to
remove cythonized file.
2022-04-14 22:55:33 +03:00
Paul A. Patience 5059e7f01e
gnu: cl-py4cl: Update to 0.0.0-1.2f2a008.
* gnu/packages/lisp-xyz.scm (sbcl-py4cl): Update to 0.0.0-1.2f2a008.
  [arguments]<#:phases>: Adjust substitutions to renamed files.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-14 20:31:59 +02:00
jgart 8f5b2f0693
gnu: Add emacs-org-modern.
* gnu/packages/emacs-xyz.scm (emacs-org-modern): New variable.

Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
2022-04-14 11:34:03 -04:00
Paul A. Patience 0ddca9d682
gnu: Add cl-numpy-file-format.
* gnu/packages/lisp-xyz.scm (cl-numpy-file-format, ecl-numpy-file-format,
  sbcl-numpy-file-format): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-14 16:33:52 +02:00
Foo Chuan Wei 0f6aaf2f62
gnu: cl-who: Update to 1.1.4-3.07dafe9.
* gnu/packages/lisp-xyz.scm (sbcl-cl-who): Update to 1.1.4-3.07dafe9.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-14 16:33:52 +02:00
Leo Famulari 6bf6529792
gnu: linux-libre 5.10: Update to 5.10.111.
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.111.
(linux-libre-5.10-pristine-source): Update hash.
2022-04-14 10:22:54 -04:00
Leo Famulari 0b20c8e071
gnu: linux-libre 5.15: Update to 5.15.34.
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.34.
(linux-libre-5.15-pristine-source): Update hash.
2022-04-14 10:22:54 -04:00
Leo Famulari 1b7f05f72c
gnu: linux-libre: Update to 5.16.20.
* gnu/packages/linux.scm (linux-libre-5.16-version): Update to 5.16.20.
(linux-libre-5.16-pristine-source): Update hash.
2022-04-14 10:22:54 -04:00
Leo Famulari 0a3fee824b
gnu: linux-libre 5.17: Update to 5.17.3.
* gnu/packages/linux.scm (linux-libre-5.17-version): Update to 5.17.3.
(linux-libre-5.17-pristine-source): Update hash.
2022-04-14 10:22:54 -04:00
Leo Famulari aaf4b08c6b
gnu: Update linux-libre 5.17 configuration files.
This option that adds new hardware support appeared after the 5.17 release.

* gnu/packages/aux-files/linux-libre/5.17-arm.conf,
gnu/packages/aux-files/linux-libre/5.17-arm64.conf,
gnu/packages/aux-files/linux-libre/5.17-i686.conf,
gnu/packages/aux-files/linux-libre/5.17-x86_64.conf: Enable support for Realtek
Ethernet switch chips.
2022-04-14 10:22:54 -04:00
Mădălin Ionel Patrașcu b0dd06bd0c
gnu: Add r-xcir.
* gnu/packages/bioconductor.scm (r-xcir): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 14:53:17 +02:00
Ludovic Courtès 16372cb347
gnu: sundials: Remove input labels.
* gnu/packages/maths.scm (sundials)[native-inputs, inputs]: Remove labels.
(sundials-openmpi)[inputs]: Remove labels.
2022-04-14 14:48:21 +02:00
Ludovic Courtès 61bcd648ca
gnu: sundials: Update to 6.1.1.
* gnu/packages/maths.scm (sundials): Update to 6.1.1.
[inputs]: Add PETSC.
(sundials-openmpi)[inputs]: Remove PETSC.
[arguments]: Remove now unnecessary flags.  Change "MPI_ENABLE" to "ENABLE_MPI".
2022-04-14 14:48:21 +02:00
Ludovic Courtès 1f82602153
gnu: guile-fibers@1.1: Support cross-compilation.
Fixes <https://issues.guix.gnu.org/54793>.
Reported by Mathieu Othacehe <othacehe@gnu.org>.

* gnu/packages/guile-xyz.scm (guile-fibers-1.1)[arguments]: Add
'support-cross-compilation' phase.
2022-04-14 14:48:20 +02:00
Ricardo Wurmus 919cecd00b
gnu: r-illuminahumanmethylation450kanno-ilmn12-hg19: Move to annotation section.
* gnu/packages/bioconductor.scm (r-illuminahumanmethylation450kanno-ilmn12-hg19):
Move this variable up to the annotation section.
2022-04-14 13:38:30 +02:00
Ricardo Wurmus 03009f2a2b
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Move to annotation section.
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): Move
this variable up to the annotation section.
2022-04-14 13:37:23 +02:00
Ricardo Wurmus c8a6e4abbc
gnu: r-chromvarmotifs: Move to (gnu packages bioinformatics).
* gnu/packages/bioconductor.scm (r-chromvarmotifs): Move this variable from here...
* gnu/packages/bioinformatics.scm (r-chromvarmotifs): ...to here.
2022-04-14 13:35:22 +02:00
Ricardo Wurmus aafd0d2309
gnu: r-absseq: Move out of experiments section.
* gnu/packages/bioconductor.scm (r-absseq): Move definition out of experiments
section.
2022-04-14 13:34:11 +02:00
Ricardo Wurmus ed3697c040
gnu: r-abarray: Move out of experiments section.
* gnu/packages/bioconductor.scm (r-abarray): Move definition out of
experiments section.
2022-04-14 13:32:52 +02:00
Ricardo Wurmus 67941709e2
gnu: r-aneufinder: Move to packages section.
* gnu/packages/bioconductor.scm (r-aneufinder): Move this definition out of
the section for Bioconductor experiments packages.
2022-04-14 13:31:33 +02:00
Mădălin Ionel Patrașcu cab6657094
gnu: Add r-absseq.
* gnu/packages/bioconductor.scm (r-absseq): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 13:29:48 +02:00
Mădălin Ionel Patrașcu a436582124
gnu: Add r-abarray.
* gnu/packages/bioconductor.scm (r-abarray): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 13:20:07 +02:00
Mădălin Ionel Patrașcu 1b2b1c30e2
gnu: Add r-acde.
* gnu/packages/bioconductor.scm (r-acde): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 13:18:07 +02:00
Mădălin Ionel Patrașcu dd9d26bce6
gnu: Add r-wppi.
* gnu/packages/bioconductor.scm (r-wppi): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 12:47:24 +02:00
Mădălin Ionel Patrașcu 55be5fc400
gnu: Add r-acme.
* gnu/packages/bioconductor.scm (r-acme): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 12:33:27 +02:00
Mădălin Ionel Patrașcu 08df30f232
gnu: Add r-acgh.
* gnu/packages/bioconductor.scm (r-acgh): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 11:59:15 +02:00
Attila Lendvai 50046194a2
gnu: libfprint: Fix build, add python for the tests.
* gnu/packages/freedesktop.scm (libfprint)[native-inputs]: Add python-minimal
as it's needed by the tests.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 11:54:11 +02:00
Mădălin Ionel Patrașcu 839241501a
gnu: Add r-ace.
* gnu/packages/bioconductor.scm (r-ace): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 11:50:34 +02:00
Mădălin Ionel Patrașcu 7d990e775e
gnu: r-catalyst: Update description.
* gnu/packages/bioconductor.scm (r-catalyst)[description]: Add Texinfo markup
and clarify a sentence.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 11:43:24 +02:00
Ricardo Wurmus d85146c9df
gnu: r-tcgabiolinks: Update to 2.22.4.
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.22.4.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus 5acc125305
gnu: r-omnipathr: Update to 3.2.8.
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.2.8.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus 2def20d3ae
gnu: r-bgeedb: Update to 2.20.1.
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.20.1.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus c7cb92e494
gnu: r-gviz: Update to 1.38.4.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.38.4.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus 3c7e190eea
gnu: r-catalyst: Update to 1.18.1.
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.18.1.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus 3e07fbf32a
gnu: r-mscoreutils: Update to 1.6.2.
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.6.2.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus 40735701a8
gnu: r-singler: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-singler): Update to 1.8.1.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus 2a71a7b961
gnu: r-s4vectors: Update to 0.32.4.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.4.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus 51ddaf48e8
gnu: r-experimenthub: Update to 2.2.1.
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.2.1.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus c9e925d444
gnu: r-universalmotif: Update to 1.12.4.
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.12.4.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus eadb1f53e9
gnu: r-variancepartition: Update to 1.24.1.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.24.1.
[propagated-inputs]: Add r-aod, r-rdpack, and r-rhpcblasctl.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus 9950ed71fc
gnu: r-cytolib: Update to 2.6.2.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.6.2.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus 0861d4fff5
gnu: r-rsubread: Update to 2.8.2.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.8.2.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus cb30400097
gnu: r-ropls: Update to 1.26.4.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.26.4.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus 0c478f50f2
gnu: r-birewire: Update to 3.26.5.
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.26.5.
[propagated-inputs]: Remove r-tsne; add r-rtsne.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus b446be46ba
gnu: r-biocfilecache: Update to 2.2.1.
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.2.1.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus 5576a98b6a
gnu: r-massspecwavelet: Update to 1.60.1.
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.60.1.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus 6f2d89fb40
gnu: r-atacseqqc: Update to 1.18.1.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.18.1.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus 88ed3fc340
gnu: r-genomicscores: Update to 2.6.1.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.6.1.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus e129f579f5
gnu: r-clusterprofiler: Update to 4.2.2.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.2.2.
2022-04-14 11:29:39 +02:00
Ricardo Wurmus 21037105ac
gnu: r-enrichplot: Update to 1.14.2.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.14.2.
2022-04-14 11:29:38 +02:00
Ricardo Wurmus f8a38e8380
gnu: r-geoquery: Update to 2.62.2.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.62.2.
2022-04-14 11:29:38 +02:00
Ricardo Wurmus fe6a8b4338
gnu: r-karyoploter: Update to 1.20.3.
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.20.3.
2022-04-14 11:29:38 +02:00
Ricardo Wurmus 84c0ec875c
gnu: r-destiny: Update to 3.8.1.
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.8.1.
[native-inputs]: Add r-knitr.
2022-04-14 11:29:38 +02:00
Ricardo Wurmus d625f52bca
gnu: r-chippeakanno: Update to 3.28.1.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.28.1.
2022-04-14 11:29:38 +02:00
Ricardo Wurmus f7d7ba3613
gnu: r-diffbind: Update to 3.4.11.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.4.11.
2022-04-14 11:29:38 +02:00
Ricardo Wurmus cf46f2c331
gnu: r-systempiper: Update to 2.0.8.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.8.
2022-04-14 11:29:38 +02:00
Ricardo Wurmus 43053e08da
gnu: r-stringdb: Update to 2.6.5.
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.6.5.
2022-04-14 11:29:38 +02:00
Ricardo Wurmus a3ddba54fd
gnu: r-slingshot: Update to 2.2.1.
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.2.1.
2022-04-14 11:29:38 +02:00
Ricardo Wurmus 6dad28d221
gnu: r-rhdf5: Update to 2.38.1.
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.38.1.
2022-04-14 11:29:38 +02:00
Ricardo Wurmus 30027f837d
gnu: r-regioner: Update to 1.26.1.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.26.1.
2022-04-14 11:29:37 +02:00
Ricardo Wurmus 06d13cf4b0
gnu: r-msnbase: Update to 2.20.4.
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.4.
2022-04-14 11:29:37 +02:00
Ricardo Wurmus e586613384
gnu: r-mutationalpatterns: Update to 3.4.1.
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.4.1.
2022-04-14 11:29:37 +02:00
Ricardo Wurmus 78f7de977a
gnu: r-limma: Update to 3.50.3.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.50.3.
2022-04-14 11:29:37 +02:00
Ricardo Wurmus 68c1c989b6
gnu: r-genomicfeatures: Update to 1.46.5.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.46.5.
2022-04-14 11:29:37 +02:00
Ricardo Wurmus 455636fecd
gnu: r-genomeinfodb: Update to 1.30.1.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.30.1.
2022-04-14 11:29:37 +02:00
Ricardo Wurmus 9000c8acc2
gnu: r-ensembldb: Update to 2.18.4.
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.4.
2022-04-14 11:29:37 +02:00
Ricardo Wurmus e4816bcaed
gnu: r-biomart: Update to 2.50.3.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.50.3.
2022-04-14 11:29:37 +02:00
Ricardo Wurmus ac67d0a467
gnu: r-annotationhub: Update to 3.2.2.
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.2.2.
2022-04-14 11:29:37 +02:00
Ricardo Wurmus 4353404e21
gnu: Add r-aod.
* gnu/packages/cran.scm (r-aod): New variable.
2022-04-14 11:29:37 +02:00
Ricardo Wurmus f6bc281cd7
gnu: r-tricycle: Move out of annotation packages.
* gnu/packages/bioconductor.scm (r-tricycle): Move definition out of the
section containing annotation packages.
2022-04-14 06:55:20 +02:00
Efraim Flashner 5743d50583
gnu: gama: Update to 2.18.
* gnu/packages/gps.scm (gama): Update to 2.18.
2022-04-13 23:53:18 +03:00
Eric Bavier b5e32d9620
gnu: idris: Fixes test failure.
* gnu/packages/patches/idris-test-ffi008.patch: New file.
* gnu/packages/idris.scm (source): Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
2022-04-13 09:48:04 -05:00
Leo Famulari 8d82d817bc
gnu: nginx: Update to 1.21.6.
* gnu/packages/web.scm (nginx): Update to 1.21.6.
(nginx-documentation): Update to 1.21.6-2829-1ecf0e0526da.
2022-04-13 10:30:21 -04:00
Foo Chuan Wei 4996104189
gnu: Add cl-simple-routes.
* gnu/packages/lisp-xyz.scm (cl-simple-routes, ecl-simple-routes,
  sbcl-simple-routes): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-13 13:42:35 +02:00
Ricardo Wurmus fc89b50b7b
gnu: awscli: Do not propagate inputs.
* gnu/packages/python-web.scm (awscli)[propagated-inputs]: Move all inputs
from here...
[inputs]: ...to here.
2022-04-13 09:26:47 +02:00
Ricardo Wurmus 21cd4c704e
gnu: awscli: Use PyYAML 6.
This should be fine because all uses of yaml.load supply the now mandatory
loader argument.

* gnu/packages/python-web.scm (awscli)[arguments]: Add phase
'use-recent-pyyaml.
[propagated-inputs]: Replace python-pyyaml-for-awscli with python-pyyaml.
2022-04-13 09:25:13 +02:00
Maxim Cournoyer 7bd5394bf8
gnu: wpewebkit: Update to 2.36.0.
* gnu/packages/webkit.scm (%webkit-version): New variable.
(wpewebkit): Update to 2.36.0, rewriting package to inherit from webkitgtk.
(webkitgtk)[source]: Use %webkit-version, and adjust definition to match that
of wpewebkit.
2022-04-12 23:18:12 -04:00
Maxim Cournoyer 4ec7aac483
gnu: webkitgtk: Update to 2.36.0 and enable extra features.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.36.0.
[source]: Remove the webkitgtk-bind-all-fonts.patch and
webkitgtk-canonicalize-paths.patch patches.
[arguments]: Use gexp.
[tests?]: Update comment.
[build-type]: Add explanatory comment.
[configure-flags]: Enable gamepad support,  remove nonexistent
USE_SYSTEMD option and enable mini-browser.
[phases]{do-not-disable-new-dtags}: New phase.
{help-cmake-find-elogind}: Likewise.
{patch-gtk-doc-scan}: Simplify to avoid for-each.  Locate docbookx.dtd via
search-input-file.
{embed-absolute-wpebackend-reference}: Use search-input-file.
[native-inputs]: Use new style.
[inputs]: Likewise.  Add elogind and libmanette.
[description]: Adjust indentation.
(webkitgtk-with-libsoup2): Re-format comment, fixing spacing.
[configure-flags]: Use gexp.
[propagated-inputs]: Use modify-inputs to replace libsoup with
libsoup-minimal-2.
* gnu/packages/patches/webkitgtk-bind-all-fonts.patch: Delete file.
* gnu/packages/patches/webkitgtk-canonicalize-paths.patch: Likewise.
* gnu/local.mk: De-register them.
2022-04-12 23:18:12 -04:00
Maxim Cournoyer 322e23e600
gnu: woff2: Propagate brotli.
* gnu/packages/fontutils.scm (woff2)[phases]: Delete trailing #t.
[inputs]: Move brotli to ...
[propagated-inputs]: ... here.
2022-04-12 23:18:12 -04:00
Leo Famulari a62f0f6d85
gnu: linux-libre 4.9: Update to 4.9.310.
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.310.
(linux-libre-4.9-pristine-source): Update hash.
2022-04-12 22:39:16 -04:00
terramorpha 950f3e4f98
gnu: Add smtpmail.
* gnu/packages/mail.scm (smtpmail): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-12 23:55:14 +02:00
Olivier Dion 1885f8035a
gnu: Add librseq.
* gnu/packages/engineering.scm (librseq): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-12 23:42:40 +02:00
Leo Nikkilä e1f0c88ea2
shepherd: Add #:supplementary-groups.
To support the argument introduced in Shepherd 0.9.0 when defining
container-bound services.

* gnu/build/shepherd.scm (exec-command*)
(make-forkexec-constructor/container): Add '#:supplementary-groups'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-12 23:40:44 +02:00
Andrew Tropin 8805c7eab1
home: shepherd: Prevent launching the second instance.
Fixes <https://issues.guix.gnu.org/54545>.

* gnu/home/services/shepherd.scm (launch-shepherd-gexp): Launch shepherd
if and only if its socket file does not already exist.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-12 23:30:09 +02:00
Ricardo Wurmus 6a69e41c17
gnu: python-moto: Update to 3.1.4.
* gnu/packages/python-xyz.scm (python-moto): Update to 3.1.4.
[arguments]: Adjust disabled tests.
[native-inputs]: Remove python-parameterized; add python-graphql-core.
[propagated-inputs]: Remove python-boto, python-idna, python-mock, and
python-six; add python-importlib-metadata and python-markupsafe.
2022-04-12 23:12:22 +02:00
Ricardo Wurmus 2c37975fcc
gnu: awscli: Use older version of botocore.
* gnu/packages/python-web.scm (awscli)[propagated-inputs]: Replace
python-botocore with python-botocore-for-awscli.
2022-04-12 23:12:22 +02:00
Ricardo Wurmus e8a99abf41
gnu: python-botocore: Update to 1.24.35.
* gnu/packages/python-xyz.scm (python-botocore): Update to 1.24.35.
2022-04-12 23:12:22 +02:00
Ricardo Wurmus 8a6c012deb
gnu: python-boto3: Update to 1.21.35.
* gnu/packages/python-xyz.scm (python-boto3): Update to 1.21.35.
[arguments]: Override 'check phase.
2022-04-12 23:12:22 +02:00
Ricardo Wurmus 9320410d76
gnu: Add python-botocore-for-awscli.
* gnu/packages/python-xyz.scm (python-botocore-for-awscli): New variable.
2022-04-12 23:12:22 +02:00
Ricardo Wurmus 797478f77b
gnu: awscli: Use older pyyaml.
* gnu/packages/python-web.scm (awscli)[propagated-inputs]: Replace
python-pyyaml with python-pyyaml-for-awscli.
2022-04-12 23:12:22 +02:00
Ricardo Wurmus 7fcb16e9d4
gnu: Add python-pyyaml-for-awscli.
* gnu/packages/python-xyz.scm (python-pyyaml-for-awscli): New variable.
2022-04-12 23:12:22 +02:00
Liliana Marie Prikler 42679e3f81
services: Replace murmur-service-type with mumble-server-service-type.
* gnu/services/telephony.scm (murmur-configuration, make-murmur-configuration)
(murmur-configuration?, murmur-configuration-package)
(murmur-configuration-user, murmur-configuration-group)
(murmur-configuration-port, murmur-configuration-welcome-text)
(murmur-configuration-server-password)
(murmur-configuration-max-users)
(murmur-configuration-max-user-bandwidth)
(murmur-configuration-database-file)
(murmur-configuration-log-file, murmur-configuration-pid-file)
(murmur-configuration-autoban-attempts)
(murmur-configuration-autoban-timeframe)
(murmur-configuration-autoban-time)
(murmur-configuration-opus-threshold)
(murmur-configuration-channel-nesting-limit)
(murmur-configuration-channelname-regex)
(murmur-configuration-username-regex)
(murmur-configuration-test-message-length)
(murmur-configuration-image-message-length)
(murmur-configuration-cert-required?)
(murmur-configuration-remember-channel?)
(murmur-configuration-allow-html?)
(murmur-configuration-allow-ping?)
(murmur-configuration-bonjour?)
(murmur-configuration-send-version?)
(murmur-configuration-log-days)
(murmur-configuration-obfuscate-ips?)
(murmur-configuration-ssl-cert murmur-configuration-ssl-key)
(murmur-configuration-ssl-dh-params murmur-configuration-ssl-ciphers)
(murmur-configuration-public-registration)
(murmur-configuration-file)
(murmur-public-registration-configuration)
(make-murmur-public-registration-configuration)
(murmur-public-registration-configuration?)
(murmur-public-registration-configuration-name)
(murmur-public-registration-configuration-url)
(murmur-public-registration-configuration-password)
(murmur-public-registration-configuration-hostname)
(murmur-service-type): Add deprecation alias and rename to ...
(mumble-server-configuration, make-mumble-server-configuration)
(mumble-server-configuration?, mumble-server-configuration-package)
(mumble-server-configuration-user, mumble-server-configuration-group)
(mumble-server-configuration-port, mumble-server-configuration-welcome-text)
(mumble-server-configuration-server-password)
(mumble-server-configuration-max-users)
(mumble-server-configuration-max-user-bandwidth)
(mumble-server-configuration-database-file)
(mumble-server-configuration-log-file, mumble-server-configuration-pid-file)
(mumble-server-configuration-autoban-attempts)
(mumble-server-configuration-autoban-timeframe)
(mumble-server-configuration-autoban-time)
(mumble-server-configuration-opus-threshold)
(mumble-server-configuration-channel-nesting-limit)
(mumble-server-configuration-channelname-regex)
(mumble-server-configuration-username-regex)
(mumble-server-configuration-test-message-length)
(mumble-server-configuration-image-message-length)
(mumble-server-configuration-cert-required?)
(mumble-server-configuration-remember-channel?)
(mumble-server-configuration-allow-html?)
(mumble-server-configuration-allow-ping?)
(mumble-server-configuration-bonjour?)
(mumble-server-configuration-send-version?)
(mumble-server-configuration-log-days)
(mumble-server-configuration-obfuscate-ips?)
(mumble-server-configuration-ssl-cert mumble-server-configuration-ssl-key)
(mumble-server-configuration-ssl-dh-params) (mumble-server-configuration-ssl-ciphers)
(mumble-server-configuration-public-registration)
(mumble-server-configuration-file)
(mumble-server-public-registration-configuration)
(make-mumble-server-public-registration-configuration)
(mumble-server-public-registration-configuration?)
(mumble-server-public-registration-configuration-name)
(mumble-server-public-registration-configuration-url)
(mumble-server-public-registration-configuration-password)
(mumble-server-public-registration-configuration-hostname)
(mumble-server-service-type): ... these.
* doc/guix.texi ("Murmur (VoIP server)"): Rename to ...
("Mumble server"): ... this.  Adjust documentation accordingly.
2022-04-12 20:32:32 +02:00
Liliana Marie Prikler 1be7f43756
gnu: libressl: Update to 3.3.6.
* gnu/packages/tls.scm (libressl): Update to 3.3.6.
2022-04-12 20:32:31 +02:00
Roman Riabenko b0f477b8a3
gnu: games: Add robotfindskitten.
* gnu/packages/games.scm (robotfindskitten): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-04-12 20:31:33 +02:00
Ricardo Wurmus 8550976832
gnu: r-rbowtie: Fix build on architectures other than x86_64.
* gnu/packages/bioconductor.scm (r-rbowtie)[arguments]: Disable use of popcnt
on systems other than x86_64.
2022-04-12 16:00:01 +02:00
Ricardo Wurmus dabd0d793c
gnu: r-rlrsim: Update to 3.1-8.
* gnu/packages/statistics.scm (r-rlrsim): Update to 3.1-8.
2022-04-12 16:00:01 +02:00
Ricardo Wurmus 59e94c9bee
gnu: r-norm: Update to 1.0-10.0.
* gnu/packages/statistics.scm (r-norm): Update to 1.0-10.0.
2022-04-12 16:00:01 +02:00
Ricardo Wurmus a12b85175b
gnu: r-puniform: Update to 0.2.5.
* gnu/packages/statistics.scm (r-puniform): Update to 0.2.5.
2022-04-12 16:00:01 +02:00
Ricardo Wurmus 7b23d24b89
gnu: r-cairo: Update to 1.5-15.
* gnu/packages/statistics.scm (r-cairo): Update to 1.5-15.
2022-04-12 16:00:01 +02:00
Ricardo Wurmus a5b0f1db21
gnu: r-tsne: Update to 0.1-3.1.
* gnu/packages/statistics.scm (r-tsne): Update to 0.1-3.1.
2022-04-12 16:00:01 +02:00
Ricardo Wurmus d3daace423
gnu: r-lme4: Update to 1.1-29.
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-29.
2022-04-12 16:00:01 +02:00
Ricardo Wurmus a2ef90890d
gnu: r-rcppeigen: Update to 0.3.3.9.2.
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.9.2.
2022-04-12 16:00:01 +02:00
Ricardo Wurmus dbfb40af46
gnu: r-robustbase: Update to 0.95-0.
* gnu/packages/statistics.scm (r-robustbase): Update to 0.95-0.
2022-04-12 16:00:01 +02:00
Ricardo Wurmus 2485a88d35
gnu: r-deoptimr: Update to 1.0-11.
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.0-11.
2022-04-12 16:00:01 +02:00
Ricardo Wurmus cbb5dfa4a3
gnu: r-sfsmisc: Update to 1.1-13.
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-13.
2022-04-12 16:00:01 +02:00
Ricardo Wurmus 39825e3c43
gnu: r-dt: Update to 0.22.
* gnu/packages/statistics.scm (r-dt): Update to 0.22.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus 76ee2cd049
gnu: r-segmented: Update to 1.4-1.
* gnu/packages/statistics.scm (r-segmented): Update to 1.4-1.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus 0ec1833c1f
gnu: r-rsqlite: Update to 2.2.12.
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.12.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus cea93b7781
gnu: r-blob: Update to 1.2.3.
* gnu/packages/statistics.scm (r-blob): Update to 1.2.3.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus 8b28ffca69
gnu: r-rprojroot: Update to 2.0.3.
* gnu/packages/statistics.scm (r-rprojroot): Update to 2.0.3.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus 7b9e39ca2a
gnu: r-rcpparmadillo: Update to 0.11.0.0.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.11.0.0.0.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus d9a0147b31
gnu: r-git2r: Update to 0.30.1.
* gnu/packages/statistics.scm (r-git2r): Update to 0.30.1.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus e4e5e9e71b
gnu: r-batchjobs: Update to 1.9.
* gnu/packages/statistics.scm (r-batchjobs): Update to 1.9.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus 3e3afecc54
gnu: r-testthat: Update to 3.1.3.
* gnu/packages/statistics.scm (r-testthat): Update to 3.1.3.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus b99c0c1c14
gnu: r-crayon: Update to 1.5.1.
* gnu/packages/statistics.scm (r-crayon): Update to 1.5.1.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus a8c2792365
gnu: r-knitr: Update to 1.38.
* gnu/packages/statistics.scm (r-knitr): Update to 1.38.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus 7b535eb49a
gnu: r-formatr: Update to 1.12.
* gnu/packages/statistics.scm (r-formatr): Update to 1.12.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus 587f307f1a
gnu: r-rcolorbrewer: Update to 1.1-3.
* gnu/packages/statistics.scm (r-rcolorbrewer): Update to 1.1-3.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus f3b1196da3
gnu: r-plyr: Update to 1.8.7.
* gnu/packages/statistics.scm (r-plyr): Update to 1.8.7.
2022-04-12 16:00:00 +02:00
Ricardo Wurmus 54a8952627
gnu: r-magrittr: Update to 2.0.3.
* gnu/packages/statistics.scm (r-magrittr): Update to 2.0.3.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus 5e24960b4d
gnu: r-mgcv: Update to 1.8-40.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-40.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus 5eb4959176
gnu: r-nlme: Update to 3.1-157.
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-157.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus bac7085564
gnu: r-matrix: Update to 1.4-1.
* gnu/packages/statistics.scm (r-matrix): Update to 1.4-1.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus 0790627649
gnu: r-cluster: Update to 2.1.3.
* gnu/packages/statistics.scm (r-cluster): Update to 2.1.3.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus 7901b3bfdd
gnu: r-mass: Update to 7.3-56.
* gnu/packages/statistics.scm (r-mass): Update to 7.3-56.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus 962ead1990
gnu: r-cccd: Update to 1.6.
* gnu/packages/cran.scm (r-cccd): Update to 1.6.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus 448dab304d
gnu: r-paws-common: Update to 0.3.17.
* gnu/packages/cran.scm (r-paws-common): Update to 0.3.17.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus 3283de189b
gnu: r-exactextractr: Update to 0.8.1.
* gnu/packages/cran.scm (r-exactextractr): Update to 0.8.1.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus 129297a4c3
gnu: r-tzdb: Update to 0.3.0.
* gnu/packages/cran.scm (r-tzdb): Update to 0.3.0.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus 3c382883c8
gnu: r-gsa: Update to 1.03.2.
* gnu/packages/cran.scm (r-gsa): Update to 1.03.2.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus 7c57ca79f6
gnu: r-antiword: Update to 1.3.1.
* gnu/packages/cran.scm (r-antiword): Update to 1.3.1.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus 691e7eb36e
gnu: r-vdiffr: Update to 1.0.4.
* gnu/packages/cran.scm (r-vdiffr): Update to 1.0.4.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus ae62ca894d
gnu: r-mlr3tuning: Update to 0.13.0.
* gnu/packages/cran.scm (r-mlr3tuning): Update to 0.13.0.
2022-04-12 15:59:59 +02:00
Ricardo Wurmus d587f1d80d
gnu: r-bbotk: Update to 0.5.2.
* gnu/packages/cran.scm (r-bbotk): Update to 0.5.2.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus f1fa7890f6
gnu: r-densestbayes: Update to 1.0-2.1.
* gnu/packages/cran.scm (r-densestbayes): Update to 1.0-2.1.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus 5ef10806d5
gnu: r-mlecens: Update to 0.1-5.
* gnu/packages/cran.scm (r-mlecens): Update to 0.1-5.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus 3631b3fa1d
gnu: r-tidymodels: Update to 0.2.0.
* gnu/packages/cran.scm (r-tidymodels): Update to 0.2.0.
[native-inputs]: Remove r-rmarkdown and pandoc.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus a59fdbb4d5
gnu: r-parsnip: Update to 0.2.1.
* gnu/packages/cran.scm (r-parsnip): Update to 0.2.1.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus cbde43b6a8
gnu: r-workflowsets: Update to 0.2.1.
* gnu/packages/cran.scm (r-workflowsets): Update to 0.2.1.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus 47b471c09d
gnu: r-tune: Update to 0.2.0.
* gnu/packages/cran.scm (r-tune): Update to 0.2.0.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus 7bb560c024
gnu: r-dials: Update to 0.1.1.
* gnu/packages/cran.scm (r-dials): Update to 0.1.1.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus f7d26682a6
gnu: r-workflows: Update to 0.2.6.
* gnu/packages/cran.scm (r-workflows): Update to 0.2.6.
[propagated-inputs]: Remove r-ellipsis.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus 727540fba3
gnu: r-igraph: Update to 1.3.0.
* gnu/packages/cran.scm (r-igraph): Update to 1.3.0.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus 17eebeeffa
gnu: r-survmisc: Update to 0.5.6.
* gnu/packages/cran.scm (r-survmisc): Update to 0.5.6.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus d58d47061b
gnu: r-km-ci: Update to 0.5-6.
* gnu/packages/cran.scm (r-km-ci): Update to 0.5-6.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus 29d7a8dcc7
gnu: r-spatstat: Update to 2.3-4.
* gnu/packages/cran.scm (r-spatstat): Update to 2.3-4.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus f574da53a4
gnu: r-spatstat-random: Update to 2.2-0.
* gnu/packages/cran.scm (r-spatstat-random): Update to 2.2-0.
2022-04-12 15:59:58 +02:00
Ricardo Wurmus 787022b052
gnu: r-spatstat-core: Update to 2.4-2.
* gnu/packages/cran.scm (r-spatstat-core): Update to 2.4-2.
2022-04-12 15:59:57 +02:00
Ricardo Wurmus 4b83a0d866
gnu: r-spatstat-geom: Update to 2.4-0.
* gnu/packages/cran.scm (r-spatstat-geom): Update to 2.4-0.
2022-04-12 15:59:57 +02:00
Ricardo Wurmus 6009c03fe7
gnu: r-spatstat-data: Update to 2.1-4.
* gnu/packages/cran.scm (r-spatstat-data): Update to 2.1-4.
2022-04-12 15:59:57 +02:00
Ricardo Wurmus 50ba34f0bf
gnu: r-conquer: Update to 1.3.0.
* gnu/packages/cran.scm (r-conquer): Update to 1.3.0.
2022-04-12 15:59:57 +02:00
Ricardo Wurmus 3d422e4e81
gnu: r-projpred: Update to 2.1.1.
* gnu/packages/cran.scm (r-projpred): Update to 2.1.1.
[propagated-inputs]: Remove r-mass, r-optimx, r-rngtools, and r-tidyverse; add r-mvtnorm
and r-rlang.
2022-04-12 15:59:57 +02:00
Ricardo Wurmus 526666d217
gnu: r-kendall: Update to 2.2.1.
* gnu/packages/cran.scm (r-kendall): Update to 2.2.1.
2022-04-12 15:59:57 +02:00
Ricardo Wurmus d72cece70d
gnu: r-rstanarm: Update to 2.21.3.
* gnu/packages/cran.scm (r-rstanarm): Update to 2.21.3.
2022-04-12 15:59:57 +02:00
Ricardo Wurmus fb448d177e
gnu: r-rstan: Update to 2.21.5.
* gnu/packages/cran.scm (r-rstan): Update to 2.21.5.
2022-04-12 15:59:57 +02:00
Ricardo Wurmus c14f63114c
gnu: r-loo: Update to 2.5.1.
* gnu/packages/cran.scm (r-loo): Update to 2.5.1.
2022-04-12 15:59:57 +02:00
Ricardo Wurmus 23aeeca58f
gnu: r-rstantools: Update to 2.2.0.
* gnu/packages/cran.scm (r-rstantools): Update to 2.2.0.
2022-04-12 15:59:57 +02:00
Ricardo Wurmus a62c9d21c7
gnu: r-cdm: Update to 7.6-11.
* gnu/packages/cran.scm (r-cdm): Update to 7.6-11.
2022-04-12 15:59:57 +02:00
Ricardo Wurmus ca7d935528
gnu: r-bdgraph: Update to 2.65.
* gnu/packages/cran.scm (r-bdgraph): Update to 2.65.
2022-04-12 15:59:57 +02:00
Ricardo Wurmus 61f5d714b4
gnu: r-sem: Update to 3.1-15.
* gnu/packages/cran.scm (r-sem): Update to 3.1-15.
2022-04-12 15:59:57 +02:00
Ricardo Wurmus 7791d6aa6e
gnu: r-flexclust: Update to 1.4-1.
* gnu/packages/cran.scm (r-flexclust): Update to 1.4-1.
2022-04-12 15:59:56 +02:00
Ricardo Wurmus fc244cb509
gnu: r-actuar: Update to 3.2-2.
* gnu/packages/cran.scm (r-actuar): Update to 3.2-2.
2022-04-12 15:59:56 +02:00
Ricardo Wurmus 3b566d8994
gnu: r-expint: Update to 0.1-7.
* gnu/packages/cran.scm (r-expint): Update to 0.1-7.
2022-04-12 15:59:56 +02:00
Ricardo Wurmus 827c45ced2
gnu: r-genalg: Update to 0.2.1.
* gnu/packages/cran.scm (r-genalg): Update to 0.2.1.
2022-04-12 15:59:56 +02:00
Ricardo Wurmus 41c21383e1
gnu: r-tuner: Update to 1.4.0.
* gnu/packages/cran.scm (r-tuner): Update to 1.4.0.
2022-04-12 15:59:56 +02:00
Ricardo Wurmus 7eec0fd7b2
gnu: r-lhs: Update to 1.1.5.
* gnu/packages/cran.scm (r-lhs): Update to 1.1.5.
2022-04-12 15:59:56 +02:00
Ricardo Wurmus 6c4f030b43
gnu: r-accsda: Update to 1.1.1.
* gnu/packages/cran.scm (r-accsda): Update to 1.1.1.
[propagated-inputs]: Remove r-rarpack and r-sparselda.
2022-04-12 15:59:56 +02:00
Ricardo Wurmus 1a91e05174
gnu: r-accept: Update to 0.9.0.
* gnu/packages/cran.scm (r-accept): Update to 0.9.0.
2022-04-12 15:59:56 +02:00
Ricardo Wurmus a1dbf372df
gnu: r-pmcmrplus: Update to 1.9.4.
* gnu/packages/cran.scm (r-pmcmrplus): Update to 1.9.4.
2022-04-12 15:59:56 +02:00
Ricardo Wurmus 6cf3b286b8
gnu: r-desolve: Update to 1.31.
* gnu/packages/cran.scm (r-desolve): Update to 1.31.
2022-04-12 15:59:56 +02:00
Ricardo Wurmus eb9ebff074
gnu: r-rgdal: Update to 1.5-30.
* gnu/packages/cran.scm (r-rgdal): Update to 1.5-30.
2022-04-12 15:59:56 +02:00
Ricardo Wurmus d6bdf4fa39
gnu: r-tidygraph: Update to 1.2.1.
* gnu/packages/cran.scm (r-tidygraph): Update to 1.2.1.
[propagated-inputs]: Remove r-rcpp; add r-cli and r-cpp11.
2022-04-12 15:59:56 +02:00
Ricardo Wurmus ca856fb082
gnu: r-umap: Update to 0.2.8.0.
* gnu/packages/cran.scm (r-umap): Update to 0.2.8.0.
[propagated-inputs]: Add r-matrix.
2022-04-12 15:59:56 +02:00
Ricardo Wurmus ef7ce112e3
gnu: r-mcmcpack: Update to 1.6-2.
* gnu/packages/cran.scm (r-mcmcpack): Update to 1.6-2.
2022-04-12 15:59:55 +02:00
Ricardo Wurmus 1db9ca7bbc
gnu: r-float: Update to 0.3-0.
* gnu/packages/cran.scm (r-float): Update to 0.3-0.
2022-04-12 15:59:55 +02:00
Ricardo Wurmus e8bc5d3770
gnu: r-ggnewscale: Update to 0.4.7.
* gnu/packages/cran.scm (r-ggnewscale): Update to 0.4.7.
2022-04-12 15:59:55 +02:00
Ricardo Wurmus 45b9b2dbce
gnu: r-aplot: Update to 0.1.3.
* gnu/packages/cran.scm (r-aplot): Update to 0.1.3.
2022-04-12 15:59:55 +02:00
Ricardo Wurmus eacc2b0ba9
gnu: r-ggfun: Update to 0.0.6.
* gnu/packages/cran.scm (r-ggfun): Update to 0.0.6.
2022-04-12 15:59:55 +02:00
Ricardo Wurmus 782ef63cb0
gnu: r-mpm: Update to 1.0-23.
* gnu/packages/cran.scm (r-mpm): Update to 1.0-23.
2022-04-12 15:59:55 +02:00
Ricardo Wurmus 4ab5b26870
gnu: r-msigdbr: Update to 7.5.1.
* gnu/packages/cran.scm (r-msigdbr): Update to 7.5.1.
2022-04-12 15:59:55 +02:00
Ricardo Wurmus f75e3f40a1
gnu: r-babelgene: Update to 22.3.
* gnu/packages/cran.scm (r-babelgene): Update to 22.3.
2022-04-12 15:59:55 +02:00
Ricardo Wurmus b6f56f68a3
gnu: r-kernlab: Update to 0.9-30.
* gnu/packages/cran.scm (r-kernlab): Update to 0.9-30.
2022-04-12 15:59:55 +02:00
Ricardo Wurmus e8c463e8a0
gnu: r-bookdown: Update to 0.25.
* gnu/packages/cran.scm (r-bookdown): Update to 0.25.
2022-04-12 15:59:55 +02:00
Ricardo Wurmus be84cf818c
gnu: r-spdep: Update to 1.2-3.
* gnu/packages/cran.scm (r-spdep): Update to 1.2-3.
2022-04-12 15:59:55 +02:00
Ricardo Wurmus 3074a0ef14
gnu: r-beanplot: Update to 1.3.1.
* gnu/packages/cran.scm (r-beanplot): Update to 1.3.1.
2022-04-12 15:59:55 +02:00
Ricardo Wurmus 86d445fc0f
gnu: r-lavaan: Update to 0.6-11.
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-11.
2022-04-12 15:59:55 +02:00
Ricardo Wurmus 9480da70d7
gnu: r-ggextra: Update to 0.10.0.
* gnu/packages/cran.scm (r-ggextra): Update to 0.10.0.
2022-04-12 15:59:55 +02:00
Ricardo Wurmus 23dbf2c63e
gnu: r-outliers: Update to 0.15.
* gnu/packages/cran.scm (r-outliers): Update to 0.15.
2022-04-12 15:59:54 +02:00
Ricardo Wurmus 548acd62ef
gnu: r-parallelly: Update to 1.31.0.
* gnu/packages/cran.scm (r-parallelly): Update to 1.31.0.
2022-04-12 15:59:54 +02:00
Ricardo Wurmus ebc5d78996
gnu: r-protviz: Update to 0.7.3.
* gnu/packages/cran.scm (r-protviz): Update to 0.7.3.
2022-04-12 15:59:54 +02:00
Ricardo Wurmus 2ed7dabd67
gnu: r-gmp: Update to 0.6-5.
* gnu/packages/cran.scm (r-gmp): Update to 0.6-5.
2022-04-12 15:59:54 +02:00
Ricardo Wurmus a72f198bfb
gnu: r-kohonen: Update to 3.0.11.
* gnu/packages/cran.scm (r-kohonen): Update to 3.0.11.
2022-04-12 15:59:54 +02:00
Ricardo Wurmus b05c08e901
gnu: r-rncl: Update to 0.8.6.
* gnu/packages/cran.scm (r-rncl): Update to 0.8.6.
2022-04-12 15:59:54 +02:00
Ricardo Wurmus 94bfa15ffd
gnu: r-admisc: Update to 0.26.
* gnu/packages/cran.scm (r-admisc): Update to 0.26.
2022-04-12 15:59:54 +02:00
Ricardo Wurmus 0a2e4ffccf
gnu: r-afex: Update to 1.1-0.
* gnu/packages/cran.scm (r-afex): Update to 1.1-0.
2022-04-12 15:59:54 +02:00
Ricardo Wurmus ec9f2c0dea
gnu: r-pander: Update to 0.6.5.
* gnu/packages/cran.scm (r-pander): Update to 0.6.5.
2022-04-12 15:59:54 +02:00
Ricardo Wurmus f4b8fb38f3
gnu: r-rapportools: Update to 1.1.
* gnu/packages/cran.scm (r-rapportools): Update to 1.1.
[propagated-inputs]: Remove r-reshape; add r-mass and r-reshape2.
2022-04-12 15:59:54 +02:00
Ricardo Wurmus 92a88b92c0
gnu: r-gert: Update to 1.6.0.
* gnu/packages/cran.scm (r-gert): Update to 1.6.0.
2022-04-12 15:59:54 +02:00
Ricardo Wurmus b81477bf58
gnu: r-ggeffects: Update to 1.1.2.
* gnu/packages/cran.scm (r-ggeffects): Update to 1.1.2.
2022-04-12 15:59:54 +02:00
Ricardo Wurmus 6f271927f7
gnu: r-performance: Update to 0.9.0.
* gnu/packages/cran.scm (r-performance): Update to 0.9.0.
2022-04-12 15:59:54 +02:00
Ricardo Wurmus cfcd32ef18
gnu: r-tmb: Update to 1.8.1.
* gnu/packages/cran.scm (r-tmb): Update to 1.8.1.
2022-04-12 15:59:54 +02:00
Ricardo Wurmus 3459a4e9b4
gnu: r-emmeans: Update to 1.7.3.
* gnu/packages/cran.scm (r-emmeans): Update to 1.7.3.
2022-04-12 15:59:53 +02:00
Ricardo Wurmus 73cda719ef
gnu: r-acceptancesampling: Update to 1.0-8.
* gnu/packages/cran.scm (r-acceptancesampling): Update to 1.0-8.
2022-04-12 15:59:53 +02:00
Ricardo Wurmus e283da0b8e
gnu: r-dofuture: Update to 0.12.1.
* gnu/packages/cran.scm (r-dofuture): Update to 0.12.1.
2022-04-12 15:59:53 +02:00
Ricardo Wurmus fd1f62a8a2
gnu: r-infotheo: Update to 1.2.0.1.
* gnu/packages/cran.scm (r-infotheo): Update to 1.2.0.1.
2022-04-12 15:59:53 +02:00
Ricardo Wurmus dd8b3daad5
gnu: r-hash: Update to 2.2.6.2.
* gnu/packages/cran.scm (r-hash): Update to 2.2.6.2.
2022-04-12 15:59:53 +02:00
Ricardo Wurmus 9613f4d28d
gnu: r-sjlabelled: Update to 1.2.0.
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.2.0.
[propagated-inputs]: Add r-datawizard.
2022-04-12 15:59:53 +02:00
Ricardo Wurmus 5db7d12c5b
gnu: r-insight: Update to 0.17.0.
* gnu/packages/cran.scm (r-insight): Update to 0.17.0.
2022-04-12 15:59:53 +02:00
Ricardo Wurmus 5bf05abb35
gnu: r-officer: Update to 0.4.2.
* gnu/packages/cran.scm (r-officer): Update to 0.4.2.
[native-inputs]: Remove r-knitr.
2022-04-12 15:59:53 +02:00
Ricardo Wurmus 9d7c65735c
gnu: r-rdpack: Update to 2.3.
* gnu/packages/cran.scm (r-rdpack): Update to 2.3.
2022-04-12 15:59:53 +02:00
Ricardo Wurmus adfcda5028
gnu: r-rbibutils: Update to 2.2.8.
* gnu/packages/cran.scm (r-rbibutils): Update to 2.2.8.
2022-04-12 15:59:53 +02:00
Ricardo Wurmus 209d20cb3f
gnu: r-polynom: Update to 1.4-1.
* gnu/packages/cran.scm (r-polynom): Update to 1.4-1.
[native-inputs]: Add r-knitr.
2022-04-12 15:59:53 +02:00
Ricardo Wurmus 8d6e4cfacd
gnu: r-fansi: Update to 1.0.3.
* gnu/packages/cran.scm (r-fansi): Update to 1.0.3.
2022-04-12 15:59:53 +02:00
Ricardo Wurmus f42b3ac904
gnu: r-fstcore: Update to 0.9.12.
* gnu/packages/cran.scm (r-fstcore): Update to 0.9.12.
[inputs]: Add zlib.
[native-inputs]: Add pkg-config.
2022-04-12 15:59:52 +02:00
Ricardo Wurmus c5979221ff
gnu: r-cubature: Update to 2.0.4.4.
* gnu/packages/cran.scm (r-cubature): Update to 2.0.4.4.
2022-04-12 15:59:52 +02:00
Ricardo Wurmus 2321ee0911
gnu: r-tseries: Update to 0.10-50.
* gnu/packages/cran.scm (r-tseries): Update to 0.10-50.
2022-04-12 15:59:52 +02:00
Ricardo Wurmus 76322379bf
gnu: r-leaflet: Update to 2.1.1.
* gnu/packages/cran.scm (r-leaflet): Update to 2.1.1.
2022-04-12 15:59:52 +02:00
Ricardo Wurmus 4b13e9cedf
gnu: r-tinytex: Update to 0.38.
* gnu/packages/cran.scm (r-tinytex): Update to 0.38.
2022-04-12 15:59:52 +02:00
Ricardo Wurmus 87e22a6ee3
gnu: r-uuid: Update to 1.0-4.
* gnu/packages/cran.scm (r-uuid): Update to 1.0-4.
2022-04-12 15:59:52 +02:00
Ricardo Wurmus 848a5f084d
gnu: r-vctrs: Update to 0.4.0.
* gnu/packages/cran.scm (r-vctrs): Update to 0.4.0.
[propagated-inputs]: Remove r-ellipsis; add r-cli.
2022-04-12 15:59:52 +02:00
Ricardo Wurmus 9b87c4d761
gnu: r-seriation: Update to 1.3.5.
* gnu/packages/cran.scm (r-seriation): Update to 1.3.5.
2022-04-12 15:59:52 +02:00
Ricardo Wurmus 1cdff104e0
gnu: r-processx: Update to 3.5.3.
* gnu/packages/cran.scm (r-processx): Update to 3.5.3.
2022-04-12 15:59:52 +02:00
Ricardo Wurmus 8cb09ced1a
gnu: r-psych: Update to 2.2.3.
* gnu/packages/cran.scm (r-psych): Update to 2.2.3.
2022-04-12 15:59:52 +02:00
Ricardo Wurmus b17977beeb
gnu: r-ddalpha: Update to 1.3.13.
* gnu/packages/cran.scm (r-ddalpha): Update to 1.3.13.
2022-04-12 15:59:52 +02:00
Ricardo Wurmus 92d3dfb18f
gnu: r-lmtest: Update to 0.9-40.
* gnu/packages/cran.scm (r-lmtest): Update to 0.9-40.
2022-04-12 15:59:52 +02:00
Ricardo Wurmus b3b1d1a48a
gnu: r-restrserve: Update to 1.0.0.
* gnu/packages/cran.scm (r-restrserve): Update to 1.0.0.
2022-04-12 15:59:52 +02:00
Ricardo Wurmus 372dec0880
gnu: r-auc: Update to 0.3.2.
* gnu/packages/cran.scm (r-auc): Update to 0.3.2.
2022-04-12 15:59:51 +02:00
Ricardo Wurmus 6325f0e27d
gnu: r-rcppthread: Update to 2.1.3.
* gnu/packages/cran.scm (r-rcppthread): Update to 2.1.3.
2022-04-12 15:59:51 +02:00
Ricardo Wurmus b5c3a90adb
gnu: r-rcpp: Update to 1.0.8.3.
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.8.3.
2022-04-12 15:59:51 +02:00
Ricardo Wurmus d5ee4a0ac4
gnu: r-sass: Update to 0.4.1.
* gnu/packages/cran.scm (r-sass): Update to 0.4.1.
2022-04-12 15:59:51 +02:00
Ricardo Wurmus 095e64db88
gnu: r-hwriter: Update to 1.3.2.1.
* gnu/packages/cran.scm (r-hwriter): Update to 1.3.2.1.
2022-04-12 15:59:51 +02:00
Ricardo Wurmus 658842b0fd
gnu: r-hmm: Update to 1.0.1.
* gnu/packages/cran.scm (r-hmm): Update to 1.0.1.
2022-04-12 15:59:51 +02:00
Ricardo Wurmus c7ade5c6cc
gnu: r-readxl: Update to 1.4.0.
* gnu/packages/cran.scm (r-readxl): Update to 1.4.0.
[propagated-inputs]: Remove r-rcpp; add r-cpp11.
[native-inputs]: Add r-knitr.
2022-04-12 15:59:51 +02:00
Ricardo Wurmus 829b934572
gnu: r-mboost: Update to 2.9-6.
* gnu/packages/cran.scm (r-mboost): Update to 2.9-6.
2022-04-12 15:59:51 +02:00
Ricardo Wurmus df9bd7785d
gnu: r-ggpmisc: Update to 0.4.6.
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.4.6.
2022-04-12 15:59:51 +02:00
Ricardo Wurmus c63d9495ab
gnu: r-ggpp: Update to 0.4.4.
* gnu/packages/cran.scm (r-ggpp): Update to 0.4.4.
2022-04-12 15:59:51 +02:00
Ricardo Wurmus bfeafc8b1d
gnu: r-waldo: Update to 0.4.0.
* gnu/packages/cran.scm (r-waldo): Update to 0.4.0.
2022-04-12 15:59:51 +02:00
Ricardo Wurmus f233cb384a
gnu: r-datawizard: Update to 0.4.0.
* gnu/packages/cran.scm (r-datawizard): Update to 0.4.0.
2022-04-12 15:59:51 +02:00
Ricardo Wurmus 418c6aff40
gnu: r-abn: Update to 2.7-0.
* gnu/packages/bioconductor.scm (r-abn): Update to 2.7-0.
[propagated-inputs]: Add r-graph.
2022-04-12 15:59:51 +02:00
Ricardo Wurmus ba5e32d9ce
gnu: r-nmf: Update to 0.24.0.
* gnu/packages/bioconductor.scm (r-nmf): Update to 0.24.0.
2022-04-12 15:59:51 +02:00
Guillaume Le Vaillant 59377f88ed
gnu: cl-py4cl: Improve package definition.
This is a follow-up to 917c25b3ba.

* gnu/packages/lisp-xyz.scm (sbcl-py4cl)[propagated-inputs]: Move python
  to...
  [inputs]: ... here.
  [arguments]: Use 'search-input-file' instead of 'which' in
  'fix-python3-path' phase.
2022-04-12 15:08:08 +02:00
Paul A. Patience 917c25b3ba
gnu: cl-py4cl: Fix path to python3.
* gnu/packages/lisp-xyz.scm (sbcl-py4cl)[arguments]: Add the
  'fix-python3-path' phase.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-12 13:59:17 +02:00
Paul A. Patience 1f22508a8a
gnu: cl-py4cl: Fix path to py4cl.py.
* gnu/packages/lisp-xyz.scm (sbcl-py4cl)[arguments]: Fix
  'replace-*base-directory*-var' phase.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-12 13:53:34 +02:00
Attila Lendvai d3d2881acf
gnu: trezor-agent: Fix it by deleting the sanity-check phase.
* gnu/packages/finance.scm (trezor-agent)[arguments]: Delete 'sanity-check'
  phase.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-12 13:39:12 +02:00
Vagrant Cascadian ba1ce250c8
gnu: genimage: Update to 15.
* gnu/packages/genimage.scm (genimage): Update to 15.
  [arguments]: Update 'fix-failing-tests phase to reference new files.
2022-04-11 14:48:35 -07:00
Vagrant Cascadian 8aae96b44c
gnu: genext2fs: Update to 1.5.0.
* gnu/packages/linux.scm (genext2fs): Update to 1.5.0.
  [source] Update URL.
  [arguments] Remove 'apply-debian-patches phase.
  [home-page] Update URL.
2022-04-11 14:48:26 -07:00