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2283 Commits (4f9f37cfa98b4afd688afb99dfda9f2f2280e57e)

Author SHA1 Message Date
Ricardo Wurmus e79f4779ce
gnu: r-abaenrichment: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.24.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus b7057dbac6
gnu: r-gofuncr: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.14.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 46de5a7503
gnu: r-atacseqqc: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.18.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 2ba1756960
gnu: r-genomicscores: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.6.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 0b8b2b63a2
gnu: r-motifstack: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.38.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 9a27f82d03
gnu: r-motifbreakr: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.8.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus a906e93378
gnu: r-motifdb: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.36.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 38ca6643c4
gnu: r-rgadem: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.42.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 4f6f03fd6e
gnu: r-bacon: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.22.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 6b27532fea
gnu: r-abseqr: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.12.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 172cddcbec
gnu: r-a4: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-a4): Update to 1.42.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus c0207d4f7c
gnu: r-a4base: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.42.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 9b249fc8a9
gnu: r-a4reporting: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.42.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 0b06e8ee13
gnu: r-a4preproc: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.42.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus c179aae47e
gnu: r-a4classif: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.42.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 5785c45e01
gnu: r-a4core: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.42.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 85c2a802f9
gnu: r-annaffy: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.66.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 58c2b7978f
gnu: r-mlinterfaces: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.74.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus b4127b3490
gnu: r-clusterexperiment: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.14.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 2e9821cd11
gnu: r-clusterprofiler: Update to 4.2.0. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.2.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 498f45bcad
gnu: r-enrichplot: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.14.1.
[propagated-inputs]: Remove r-cowplot; add r-aplot and r-yulab-utils.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 9b6dee4c0d
gnu: r-dose: Update to 3.20.0. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.20.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 6dbc856518
gnu: r-fgsea: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.20.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus bca9a6b4c1
gnu: r-fcscan: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.8.0.
[propagated-inputs]: Add r-doparallel and r-foreach.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 7ac356d337
gnu: r-sigpathway: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.62.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus bc406e02bb
gnu: r-anota: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-anota): Update to 1.42.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 46c97a358f
gnu: r-gosemsim: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.20.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 75f1085c2f
gnu: r-heatplus: Update to 3.2.0. 
* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.2.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus a2b346ab13
gnu: r-varianttools: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.36.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 07e49dac6f
gnu: r-tradeseq: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.8.0.
[propagated-inputs]: Remove r-monocle; add r-mass and r-trajectoryutils.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 06c89769c6
gnu: r-ioniser: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.18.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 327371f61f
gnu: r-linnorm: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.18.0.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus f151723cb6
gnu: r-lumi: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.46.0.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus d9c9ec4396
gnu: r-methylumi: Update to 2.40.1. 
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.40.1.
[propagated-inputs]: Add r-genomicfeatures.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus 74ea385c8a
gnu: r-minfi: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.40.0.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus 56f8449df1
gnu: r-bumphunter: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.36.0.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus 328050f083
gnu: r-siggenes: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.68.0.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus dc7a2b3b96
gnu: r-illuminaio: Update to 0.36.0. 
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.36.0.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus c14e90b2e0
gnu: r-geoquery: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.62.0.
[propagated-inputs]: Add r-data-table.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus cf5a3022c9
gnu: r-scone: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.18.0.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus d06be34abd
gnu: r-scdd: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.18.0.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus b5235660c8
gnu: r-noiseq: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.38.0.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus 2b78b19ed8
gnu: r-monocle: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.22.0.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus aa5a9e5d63
gnu: r-mast: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-mast): Update to 1.20.0.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus 78018d3c5c
gnu: r-batchelor: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.10.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus 2953aac54a
gnu: r-residualmatrix: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.4.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus 25dc8fb984
gnu: r-icobra: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.22.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus 3835d77db3
gnu: r-ihw: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.22.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus b5e67f5747
gnu: r-lpsymphony: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.22.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus 2b0a656fd7
gnu: r-karyoploter: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.20.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus d9b6a42297
gnu: r-ebseq: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.34.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus e639d03112
gnu: r-dnacopy: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.68.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus efb1b28f32
gnu: r-copynumber: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.34.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus 7c4992115c
gnu: r-chipexoqual: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.18.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus 5c53d21450
gnu: r-savr: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-savr): Update to 1.32.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus 8c6a0221fb
gnu: r-biocsingular: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.10.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus fae42c164b
gnu: r-metapod: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.2.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus 9a79db434a
gnu: r-ggtree: Update to 3.2.0. 
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.2.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus eb7a7bacbc
gnu: r-treeio: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.18.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus 496260ddf1
gnu: r-scaledmatrix: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.2.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus 651d54ef51
gnu: r-biocneighbors: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.12.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus 7ec0b978de
gnu: r-ruvseq: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.28.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus 6f2ef7761a
gnu: r-dnabarcodes: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.24.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus fff0fe2ec9
gnu: r-inspect: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.24.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus 92f690c1b0
gnu: r-plgem: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.66.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus e5cd10e99d
gnu: r-rots: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.22.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus 9050a5c7f6
gnu: r-glimma: Update to 2.4.0. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.4.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus 6ad43d2d78
gnu: r-goseq: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.46.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus e9feedb902
gnu: r-ctc: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.68.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus 6371513fd0
gnu: r-genomicinteractions: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.28.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus 3dac6963f9
gnu: r-interactionset: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.22.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus 56da30065a
gnu: r-riboseqr: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.28.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus 765052f5dc
gnu: r-riboprofiling: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.24.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus 4f094515b0
gnu: r-chipcomp: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.24.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus f1cc328101
gnu: r-bayseq: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.28.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus 29bfd56aa0
gnu: r-qdnaseq: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.30.0.
[propagated-inputs]: Remove r-future.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus 19fb6bae8c
gnu: r-cghcall: Update to 2.56.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.56.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus c5cb1e0118
gnu: r-cghbase: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.54.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus c6cff9686b
gnu: r-marray: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.72.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus 7bda0a9220
gnu: r-matrixgenerics: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.6.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus 0d11010cef
gnu: r-chippeakanno: Update to 3.28.0. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.28.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus aad12099dd
gnu: r-graph: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.72.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus d6a3debb6d
gnu: r-multtest: Update to 2.50.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.50.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus 8826132332
gnu: r-mbkmeans: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.10.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus 6f6478b175
gnu: r-diffbind: Update to 3.4.0. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.4.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus d05485f7f7
gnu: r-greylistchip: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.26.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus 88c203a85f
gnu: r-apeglm: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.16.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus c6c1f9fc72
gnu: r-qvalue: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.26.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus 980a36cbee
gnu: r-oligo: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.58.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus 0cffd15771
gnu: r-oligoclasses: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.56.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus 319038ace3
gnu: r-geneplotter: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.72.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus c3a3c417c0
gnu: r-zlibbioc: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.40.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus 469cf86fa2
gnu: r-xvector: Update to 0.34.0. 
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.34.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus 0b341967e3
gnu: r-vsn: Update to 3.62.0. 
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.62.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus e174313541
gnu: r-variantannotation: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.40.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus 47c3ec038e
gnu: r-tximport: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.22.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus bb69853f89
gnu: r-topgo: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.46.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus 442a355026
gnu: r-systempiper: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.0.
[propagated-inputs]: Remove r-annotate, r-assertthat, r-batchtools, r-deseq2, r-dot,
r-edger, r-genomicfeatures, r-go-db, r-gostats, r-iranges, r-limma,
r-pheatmap, r-rjson, r-rsvg, r-testthat, and r-variantannotation; add
r-biocgenerics and r-htmlwidgets.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus c3d9b4b097
gnu: r-sva: Update to 3.42.0. 
* gnu/packages/bioconductor.scm (r-sva): Update to 3.42.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus 679abce085
gnu: r-summarizedexperiment: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.24.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus 2a3f2f002e
gnu: r-structuralvariantannotation: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.10.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus 41e1bf39aa
gnu: r-slingshot: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.2.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus 91c78f9527
gnu: r-trajectoryutils: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.2.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus 9398e3e047
gnu: r-simplifyenrichment: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.4.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus bf90dbefcc
gnu: r-shortread: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.52.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus f1dedc13dc
gnu: r-seqpattern: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.26.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus 09d921d442
gnu: r-seqlogo: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.60.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus d076801410
gnu: r-rtracklayer: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.54.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus f0774df7c1
gnu: r-rsamtools: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.10.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus e38d619476
gnu: r-rhdf5filters: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.6.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus 148e520d4a
gnu: r-rhdf5: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.38.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus 559953466e
gnu: r-reportingtools: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.34.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus cbf8dbc3cb
gnu: r-regioner: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.26.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus c4908b9eff
gnu: r-rcas: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.20.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus 3caf93321d
gnu: r-rbgl: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.70.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus dc4cc2aa32
gnu: r-protgenerics: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.26.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus 78fd768566
gnu: r-pcamethods: Update to 1.86.0. 
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.86.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus ada8646a38
gnu: r-organismdbi: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.36.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus 3de4beb013
gnu: r-mzr: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.28.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus 62d157a2e2
gnu: r-mzid: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.32.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus a6402a7fee
gnu: r-msnid: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.28.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus 35e1bdc5b8
gnu: r-msnbase: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus b96f76aff0
gnu: r-mutationalpatterns: Update to 3.4.0. 
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.4.0.
[propagated-inputs]: Add r-rcolorbrewer.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus d4a0101ad9
gnu: r-methylkit: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.20.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus 0465cc8251
gnu: r-limma: Update to 3.50.0. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.50.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus a0cc78a554
gnu: r-keggrest: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.34.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus 1fa012822d
gnu: r-interactivedisplaybase: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.32.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus b6bd74cefb
gnu: r-impute: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-impute): Update to 1.68.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus eeeb38d569
gnu: r-rhtslib: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 1.26.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus bcd10420cc
gnu: r-hpar: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.36.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus df5553ee14
gnu: r-gseabase: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.56.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus 8148c6ba72
gnu: r-gostats: Update to 2.60.0. 
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.60.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus 98c8e7f735
gnu: r-genomicranges: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.46.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus 36ea351603
gnu: r-genomicfiles: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.30.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus 60d5b89717
gnu: r-genomicfeatures: Update to 1.46.1. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.46.1.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus f599ef1cc4
gnu: r-genomicalignments: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.30.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus 9122892ec9
gnu: r-genomeinfodb: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.30.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus 251e6950d8
gnu: r-genomation: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.26.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus 38d13a6747
gnu: r-geneoverlap: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.30.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus 7e80f6fb57
gnu: r-genefilter: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.76.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus 3a2cab95b1
gnu: r-gage: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-gage): Update to 2.44.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus 309e04ba18
gnu: r-fastseg: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.40.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus 7973617595
gnu: r-ensembldb: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus 46663d5769
gnu: r-edger: Update to 3.36.0. 
* gnu/packages/bioconductor.scm (r-edger): Update to 3.36.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus 933366ffe7
gnu: r-edaseq: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.28.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus de8089a767
gnu: r-dirichletmultinomial: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.36.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus cb87707987
gnu: r-dexseq: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.40.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus 87db919dbb
gnu: r-deseq2: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.34.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus f34bcc5c6b
gnu: r-copywriter: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-copywriter): Update to 2.26.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus e5d90645ea
gnu: r-complexheatmap: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.10.0.
[propagated-inputs]: Remove r-cairo.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus 126a4b6c9d
gnu: r-chipseq: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.44.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus cd7c1e2c3e
gnu: r-chipseeker: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.30.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus 395e9ab420
gnu: r-category: Update to 2.60.0. 
* gnu/packages/bioconductor.scm (r-category): Update to 2.60.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus a6b83bd30d
gnu: r-bsgenome: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.62.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus eea602cdbb
gnu: r-biovizbase: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.42.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus 7851f7f2c6
gnu: r-biostrings: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.62.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus d0ceaf62fc
gnu: r-biomart: Update to 2.50.0. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.50.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus 918c08e20d
gnu: r-biobase: Update to 2.54.0. 
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.54.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus e606add2e4
gnu: r-bamsignals: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.26.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus 9efb70c077
gnu: r-aroma-light: Update to 3.24.0. 
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.24.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus 7f291d0965
gnu: r-annotationhub: Update to 3.2.0. 
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.2.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus c46f294350
gnu: r-annotationforge: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.36.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus 0e31c0034a
gnu: r-annotationfilter: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.18.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus eccd328684
gnu: r-annotationdbi: Update to 1.56.1. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.56.1.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus eee1bc786a
gnu: r-annotate: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.72.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus 5b63db8f83
gnu: r-affxparser: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.66.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus 5de927226c
gnu: r-affyio: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.64.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus 5ab6e9e100
gnu: r-affycoretools: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.66.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus 21b5db3f1e
gnu: r-affycontam: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.52.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus 71f58a16ae
gnu: r-affycompatible: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.54.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus a610856e88
gnu: r-affycomp: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.70.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus 1a4e10d555
gnu: r-affy: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-affy): Update to 1.72.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus a85e744c3d
gnu: r-iranges: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.28.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus 1acf3f1821
gnu: r-ideoviz: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.30.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus b0a2fc9253
gnu: r-bluster: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.4.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus 35ccf99fff
gnu: r-delayedarray: Update to 0.20.0. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.20.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus 7cc053eaca
gnu: r-deepsnv: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.40.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus 628a8f8c78
gnu: r-decipher: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.22.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus 07b14e81f9
gnu: r-cummerbund: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.36.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus 9d51c1f423
gnu: r-coverageview: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.32.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus 3622390699
gnu: r-biocgenerics: Update to 0.40.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.40.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus 6ed26516bf
gnu: r-biocversion: Update to 3.14.0. 
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.14.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus fc0fa7a431
gnu: r-aneufinder: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.22.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus d1c79f5a2c
gnu: r-biocparallel: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.28.0.
[arguments]: Adjust build phase to patch renamed file.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus 4a92ab58f6
gnu: Add r-msfeatures. 
* gnu/packages/bioconductor.scm (r-msfeatures): New variable.
 2021-11-07 22:34:34 +00:00
Ricardo Wurmus fdb9a02a68
gnu: r-s4vectors: Update to 0.30.2. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.30.2.
 2021-11-03 21:07:30 +00:00
Ricardo Wurmus 81dad9f62d
gnu: r-multidataset: Update to 1.20.2. 
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.20.2.
 2021-11-03 21:07:30 +00:00
Ricardo Wurmus c00ca981a9
gnu: r-motifstack: Update to 1.36.1. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.36.1.
 2021-11-03 21:07:30 +00:00
Ricardo Wurmus a6f270b7af
gnu: r-enrichplot: Update to 1.12.3. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.12.3.
 2021-11-03 21:07:30 +00:00
Ricardo Wurmus 11cf6d399c
gnu: r-dose: Update to 3.18.3. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.18.3.
 2021-11-03 21:07:29 +00:00
Ricardo Wurmus b4888a5581
gnu: r-genefilter: Update to 1.74.1. 
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.74.1.
 2021-11-03 21:07:29 +00:00
Ricardo Wurmus 218912f6ad
gnu: r-annotationhub: Update to 3.0.2. 
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.0.2.
 2021-11-03 21:07:29 +00:00
Ricardo Wurmus 0bb9c9a723
gnu: r-annotationforge: Update to 1.34.1. 
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.34.1.
 2021-11-03 21:07:29 +00:00
Ricardo Wurmus 3c3d7f0410
gnu: r-biocthis: Set HOME variable. 
* gnu/packages/bioconductor.scm (r-biocthis)[arguments]: Add build phase
'set-HOME.
 2021-11-03 21:07:29 +00:00
Mădălin Ionel Patrașcu 4f9f2539f3
gnu: Add r-zellkonverter. 
* gnu/packages/bioconductor.scm (r-zellkonverter): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-11-03 21:07:29 +00:00
Ricardo Wurmus 095b76c254
gnu: r-interval: Update to 1.1-0.8. 
* gnu/packages/bioconductor.scm (r-interval): Update to 1.1-0.8.
 2021-11-03 21:07:15 +00:00
Ricardo Wurmus ac327cc7fc
gnu: Add r-fcscan. 
* gnu/packages/bioconductor.scm (r-fcscan): New variable.
 2021-10-21 10:59:16 +00:00
Ricardo Wurmus b28cd884b8
gnu: r-gdsfmt: Adjust bad substitution. 
* gnu/packages/bioconductor.scm (r-gdsfmt)[source]: Include beginning-of-line
anchor in substitution regular expression.
 2021-09-30 12:39:49 +02:00
Ricardo Wurmus 0398a89fa1
gnu: r-delayedmatrixstats: Update to 1.14.3. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.14.3.
 2021-09-30 12:39:49 +02:00
Ricardo Wurmus 425c53b568
gnu: r-s4vectors: Update to 0.30.1. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.30.1.
 2021-09-30 12:39:49 +02:00
Ricardo Wurmus c935b25a9e
gnu: r-biocpkgtools: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.10.2.
[propagated-inputs]: Remove r-rex.
 2021-09-30 12:39:49 +02:00
Ricardo Wurmus 3683f7f0a8
gnu: r-timeseriesexperiment: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.10.1.
 2021-09-30 12:39:48 +02:00
Ricardo Wurmus 74e2186731
gnu: r-gdsfmt: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.28.1.
 2021-09-30 12:39:48 +02:00
Ricardo Wurmus 494b7c4eca
gnu: r-cicero: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.10.1.
 2021-09-30 12:39:48 +02:00
Ricardo Wurmus 3278daa726
gnu: r-zinbwave: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.14.2.
 2021-09-30 12:39:48 +02:00
Ricardo Wurmus a88e7abf2f
gnu: r-clusterprofiler: Update to 4.0.5. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.5.
[propagated-inputs]: Remove r-rvcheck; add r-yulab-utils.
 2021-09-30 12:39:48 +02:00
Ricardo Wurmus 1359fc7fbd
gnu: r-ggtree: Update to 3.0.4. 
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.0.4.
[propagated-inputs]: Remove r-rvcheck; add r-ggfun and r-yulab-utils.
 2021-09-30 12:39:48 +02:00
Ricardo Wurmus 538618552b
gnu: r-matrixgenerics: Update to 1.4.3. 
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.4.3.
 2021-09-30 12:39:48 +02:00
Ricardo Wurmus ce23a074f0
gnu: r-chippeakanno: Update to 3.26.4. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.4.
 2021-09-30 12:39:48 +02:00
Ricardo Wurmus 4fb187b79e
gnu: r-diffbind: Update to 3.2.7. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.7.
 2021-09-30 12:39:47 +02:00
Ricardo Wurmus 43ac163bdf
gnu: r-genomicfeatures: Update to 1.44.2. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.44.2.
 2021-09-30 12:39:47 +02:00
Ricardo Wurmus 7c6046a6db
gnu: r-genomeinfodb: Update to 1.28.4. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.28.4.
 2021-09-30 12:39:47 +02:00
Ricardo Wurmus 0ac7b8b6ad
gnu: r-edger: Update to 3.34.1. 
* gnu/packages/bioconductor.scm (r-edger): Update to 3.34.1.
 2021-09-30 12:39:47 +02:00
Ricardo Wurmus 77a5fdd51c
gnu: r-biocparallel: Update to 1.26.2. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.26.2.
 2021-09-30 12:39:47 +02:00
Ricardo Wurmus e8aab58d0c
gnu: r-affxparser: Update to 1.64.1. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.64.1.
 2021-09-30 12:39:47 +02:00
Tobias Geerinckx-Rice 708fe49523
gnu: r-simplifyenrichment: Fix typo in description. 
* gnu/packages/bioconductor.scm (r-simplifyenrichment)[description]:
Fix ‘implemeted’ typo.
 2021-09-28 22:00:48 +02:00
Ricardo Wurmus ca962b5ba9
gnu: Add r-omnipathr. 
* gnu/packages/bioconductor.scm (r-omnipathr): New variable.
 2021-09-23 14:46:49 +02:00
zimoun 8e54aafa39
gnu: Add r-simplifyenrichment. 
* gnu/packages/bioconductor.scm (r-simplifyenrichment): New variable.
 2021-09-20 17:23:15 +02:00
Ricardo Wurmus 5cfe5ddece
gnu: Add r-biscuiteer. 
* gnu/packages/bioconductor.scm (r-biscuiteer): New variable.
 2021-09-07 14:47:57 +02:00
Ricardo Wurmus f051f68ca2
gnu: Add r-dmrseq. 
* gnu/packages/bioconductor.scm (r-dmrseq): New variable.
 2021-09-07 14:47:57 +02:00
Ricardo Wurmus 0d1990b986
gnu: Add r-bsseq. 
* gnu/packages/bioconductor.scm (r-bsseq): New variable.
 2021-09-07 14:47:57 +02:00
Ricardo Wurmus b63fb6a2e6
gnu: Add r-biotmle. 
* gnu/packages/bioconductor.scm (r-biotmle): New variable.
 2021-09-07 14:47:57 +02:00
Ricardo Wurmus ccc1b9e5a1
gnu: Add r-biotip. 
* gnu/packages/bioconductor.scm (r-biotip): New variable.
 2021-09-07 14:47:57 +02:00
Ricardo Wurmus 32d8a7d3ba
gnu: Add r-bioqc. 
* gnu/packages/bioconductor.scm (r-bioqc): New variable.
 2021-09-07 14:47:56 +02:00
Ricardo Wurmus d5f792ac10
gnu: Add r-bionetstat. 
* gnu/packages/bioconductor.scm (r-bionetstat): New variable.
 2021-09-07 14:47:56 +02:00
Ricardo Wurmus 35526b62a8
gnu: Add r-bionet. 
* gnu/packages/bioconductor.scm (r-bionet): New variable.
 2021-09-07 14:47:56 +02:00
Ricardo Wurmus 4f6b3821eb
gnu: Add r-bionero. 
* gnu/packages/bioconductor.scm (r-bionero): New variable.
 2021-09-07 14:47:56 +02:00
Ricardo Wurmus 2794024dc2
gnu: Add r-biomvrcns. 
* gnu/packages/bioconductor.scm (r-biomvrcns): New variable.
 2021-09-07 14:47:56 +02:00
Ricardo Wurmus 9cb08ead85
gnu: Add r-biomvcclass. 
* gnu/packages/bioconductor.scm (r-biomvcclass): New variable.
 2021-09-07 14:47:56 +02:00
Ricardo Wurmus e10a3bc0ca
gnu: Add r-mvcclass. 
* gnu/packages/bioconductor.scm (r-mvcclass): New variable.
 2021-09-07 14:47:56 +02:00
Ricardo Wurmus 0780bcc0c0
gnu: Add r-biscuiteerdata. 
* gnu/packages/bioconductor.scm (r-biscuiteerdata): New variable.
 2021-09-07 14:47:56 +02:00
Ricardo Wurmus bcbd8b7921
gnu: Add r-mus-musculus. 
* gnu/packages/bioconductor.scm (r-mus-musculus): New variable.
 2021-09-07 14:47:56 +02:00
Ricardo Wurmus aed1504837
gnu: Add r-biomformat. 
* gnu/packages/bioconductor.scm (r-biomformat): New variable.
 2021-09-07 12:16:47 +02:00
Ricardo Wurmus 48e300bd3f
gnu: Add r-biodb. 
* gnu/packages/bioconductor.scm (r-biodb): New variable.
 2021-09-07 12:16:41 +02:00
Ricardo Wurmus 2c8e3595e3
gnu: Add r-biocdockermanager. 
* gnu/packages/bioconductor.scm (r-biocdockermanager): New variable.
 2021-09-07 12:16:33 +02:00
Ricardo Wurmus 7ca0a0f0e7
gnu: Add r-biocthis. 
* gnu/packages/bioconductor.scm (r-biocthis): New variable.
 2021-09-07 12:08:17 +02:00
Ricardo Wurmus fd5372e40f
gnu: Add r-basilisk. 
* gnu/packages/bioconductor.scm (r-basilisk): New variable.
 2021-09-07 12:08:13 +02:00
Ricardo Wurmus dde984ca19
gnu: Add r-basilisk-utils. 
* gnu/packages/bioconductor.scm (r-basilisk-utils): New variable.
 2021-09-07 12:08:06 +02:00
Ricardo Wurmus c9d545ab01
gnu: Add r-dir-expiry. 
* gnu/packages/bioconductor.scm (r-dir-expiry): New variable.
 2021-09-07 12:07:59 +02:00
Ricardo Wurmus b76b47ebe4
gnu: Add r-genetclassifier. 
* gnu/packages/bioconductor.scm (r-genetclassifier): New variable.
 2021-09-07 12:01:25 +02:00
Ricardo Wurmus e43c6d2e4a
gnu: Add r-minet. 
* gnu/packages/bioconductor.scm (r-minet): New variable.
 2021-09-07 12:01:16 +02:00
Ricardo Wurmus 5143f3852d
gnu: Add r-biobtreer. 
* gnu/packages/bioconductor.scm (r-biobtreer): New variable.
 2021-09-07 12:01:10 +02:00
Ricardo Wurmus a59aee1330
gnu: Add r-bgeedb. 
* gnu/packages/bioconductor.scm (r-bgeedb): New variable.
 2021-09-07 12:01:03 +02:00
Ricardo Wurmus 26da032d5b
gnu: Add r-org-bt-eg-db. 
* gnu/packages/bioconductor.scm (r-org-bt-eg-db): New variable.
 2021-09-07 12:00:53 +02:00
Ricardo Wurmus af81591375
gnu: Add r-bgeecall. 
* gnu/packages/bioconductor.scm (r-bgeecall): New variable.
 2021-09-07 11:44:33 +02:00
Ricardo Wurmus 62381dce86
gnu: Add r-beclear. 
* gnu/packages/bioconductor.scm (r-beclear): New variable.
 2021-09-07 11:44:33 +02:00
Ricardo Wurmus 816d52ba93
gnu: Add r-megadepth. 
* gnu/packages/bioconductor.scm (r-megadepth): New variable.
 2021-09-06 14:48:24 +02:00
Ricardo Wurmus 2f16659b40
gnu: Add r-ballgown. 
* gnu/packages/bioconductor.scm (r-ballgown): New variable.
 2021-08-25 12:30:33 +02:00
Ricardo Wurmus 68b22a8541
gnu: r-delayedmatrixstats: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.14.2.
 2021-08-24 12:28:13 +02:00
Ricardo Wurmus 26d6db11f0
gnu: r-sparsematrixstats: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.4.2.
 2021-08-24 12:28:13 +02:00
Ricardo Wurmus b2316605e2
gnu: r-scuttle: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.2.1.
 2021-08-24 12:28:13 +02:00
Ricardo Wurmus 2897ad3178
gnu: r-beachmat: Update to 2.8.1. 
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.8.1.
 2021-08-24 12:28:13 +02:00
Ricardo Wurmus da7e7c9de8
gnu: r-biocset: Update to 1.6.1. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.6.1.
 2021-08-24 12:28:13 +02:00
Ricardo Wurmus 9ff9a4756d
gnu: r-universalmotif: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.10.2.
 2021-08-24 12:28:13 +02:00
Ricardo Wurmus 0022f40462
gnu: r-clusterprofiler: Update to 4.0.4. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.4.
 2021-08-24 12:28:13 +02:00
Ricardo Wurmus 5543456ae9
gnu: r-dose: Update to 3.18.2. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.18.2.
 2021-08-24 12:28:13 +02:00
Ricardo Wurmus 1c23b99a3c
gnu: r-batchelor: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.8.1.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 82d6774757
gnu: r-ggtree: Update to 3.0.3. 
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.0.3.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus e4ad91eb3e
gnu: r-treeio: Update to 1.16.2. 
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.16.2.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 917f0def66
gnu: r-matrixgenerics: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.4.2.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 3ef4c12a49
gnu: r-chippeakanno: Update to 3.26.3. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.3.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 33fedd371a
gnu: r-diffbind: Update to 3.2.5. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.5.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 514454cc8f
gnu: r-structuralvariantannotation: Update to 1.8.2. 
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.8.2.
[propagated-inputs]: Add r-genomeinfodb, r-iranges, r-s4vectors, and
r-summarizedexperiment.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 1920e567a7
gnu: r-rtracklayer: Update to 1.52.1. 
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.52.1.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 495c50c68d
gnu: r-limma: Update to 3.48.3. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.48.3.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 3277c4e749
gnu: r-genomicfeatures: Update to 1.44.1. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.44.1.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 8df84bedf7
gnu: r-ensembldb: Update to 2.16.4. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.4.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus e46cf457bb
gnu: r-biostrings: Update to 2.60.2. 
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.60.2.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 227579e84a
gnu: r-biomart: Update to 2.48.3. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.48.3.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus 1aceb93a6f
gnu: r-ldblock: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.22.1.
 2021-08-04 16:21:17 +02:00
Ricardo Wurmus 5909dd9e8e
gnu: r-roc: Update to 1.68.1. 
* gnu/packages/bioconductor.scm (r-roc): Update to 1.68.1.
 2021-08-04 16:21:16 +02:00
Ricardo Wurmus b94c750e01
gnu: r-mixomics: Update to 6.16.3. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.16.3.
 2021-08-04 16:21:16 +02:00
Ricardo Wurmus 6da8e99c9c
gnu: r-gosemsim: Update to 2.18.1. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.18.1.
 2021-08-04 16:21:12 +02:00
Ricardo Wurmus 75ec0fa243
gnu: Add r-tximeta. 
* gnu/packages/bioconductor.scm (r-tximeta): New variable.
 2021-08-04 13:04:04 +02:00
Ricardo Wurmus ffb381856d
gnu: r-xcms: Update to 3.14.1. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.14.1.
 2021-07-29 20:20:18 +02:00
Ricardo Wurmus e06beb503c
gnu: r-reportingtools: Update to 2.32.1. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.32.1.
 2021-07-29 20:20:15 +02:00
Ricardo Wurmus a32241fcda
gnu: r-catalyst: Update to 1.16.2. 
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.16.2.
 2021-07-28 22:26:56 +02:00
Ricardo Wurmus 9d7eb480f8
gnu: r-mixomics: Update to 6.16.2. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.16.2.
 2021-07-28 22:26:56 +02:00
Ricardo Wurmus d0d3637c92
gnu: r-rsubread: Update to 2.6.4. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.6.4.
 2021-07-28 22:26:56 +02:00
Ricardo Wurmus 8d9626dd7d
gnu: r-annotatr: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.18.1.
 2021-07-28 22:26:56 +02:00
Ricardo Wurmus 73fa220b43
gnu: r-motifbreakr: Update to 2.6.1. 
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.6.1.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus 336b110f69
gnu: r-scone: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.16.1.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus fd0851ee97
gnu: r-chippeakanno: Update to 3.26.2. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.2.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus acc62073be
gnu: r-ensembldb: Update to 2.16.3. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.3.
 2021-07-28 22:26:55 +02:00
Tobias Geerinckx-Rice 5079aa2afd
gnu: r-structuralvariantannotation: Update to 1.8.1. 
The previous 1.8.0 source tarball has vanished.

* gnu/packages/bioconductor.scm (r-structuralvariantannotation):
Update to 1.8.1.
[propagated-inputs]: Add r-genomicfeatures.
 2021-07-25 19:39:11 +02:00
Ricardo Wurmus 4140b66837
gnu: r-gviz: Update to 1.36.2. 
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.36.2.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus 564142d25e
gnu: r-catalyst: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.16.1.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus c4ffceb0c2
gnu: r-rhdf5lib: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.14.2.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus e957d6c93b
gnu: r-bioconcotk: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.12.1.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus 1cbcf54204
gnu: r-biocstyle: Update to 2.20.2. 
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.20.2.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus 23abd7b6b6
gnu: r-mixomics: Update to 6.16.1. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.16.1.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus 3d539883ca
gnu: r-rsubread: Update to 2.6.3. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.6.3.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus a94d1e3b4c
gnu: r-annaffy: Update to 1.64.2. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.64.2.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus 344c901a4c
gnu: r-clusterprofiler: Update to 4.0.2. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.2.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus a5e6826020
gnu: r-enrichplot: Update to 1.12.2. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.12.2.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus 209642912d
gnu: r-dose: Update to 3.18.1. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.18.1.
 2021-07-10 21:35:29 +02:00
Ricardo Wurmus 072533f579
gnu: r-diffbind: Update to 3.2.4. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.4.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus 9496f34e23
gnu: r-systempiper: Update to 1.26.3. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 1.26.3.
[propagated-inputs]: Add r-crayon and r-s4vectors.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus ea52ad7d4f
gnu: r-mzr: Update to 2.26.1. 
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.26.1.
 2021-07-10 21:35:28 +02:00
Ricardo Wurmus 8936e45327
gnu: r-limma: Update to 3.48.1. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.48.1.
 2021-07-10 21:35:28 +02:00