me
/
guix
Archived
1
0
Fork 0
Code
79,061 Commits
1 Branch
0 Tags
410 MiB
Commit Graph

1405 Commits (764e2dba209b3283ebe35a22b49dc4771d42f181)

Author SHA1 Message Date
zimoun ff92c2873c
gnu: r-annotationforge: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-annotationforge): Move from here...
* gnu/packages/bioconductor.scm (r-annotationforge): ...to here.
 2021-03-12 14:45:53 +01:00
zimoun d769b10714
gnu: r-dexseq: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-dexseq): Move from here...
* gnu/packages/bioconductor.scm (r-dexseq): ...to here.
 2021-03-12 14:45:53 +01:00
zimoun 373545855d
gnu: r-deseq2: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-deseq2): Move from here...
* gnu/packages/bioconductor.scm (r-deseq2): ...to here.
 2021-03-12 14:45:53 +01:00
zimoun a35ea5fed9
gnu: r-genefilter: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-genefilter): Move from here...
* gnu/packages/bioconductor.scm (r-genefilter): ...to here.
 2021-03-12 14:45:53 +01:00
Ricardo Wurmus 323aec6ad9
gnu: r-bioassayr: Update home page. 
* gnu/packages/bioconductor.scm (r-bioassayr)[home-page]: Follow permanent
redirect.
 2021-03-12 14:41:15 +01:00
zimoun 2528cad451
gnu: r-bioassayr: Update to 1.28.2. 
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.2.
 2021-03-12 14:41:14 +01:00
zimoun 8c8d365ca3
gnu: r-chemminer: Update to 3.42.2. 
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.2.
 2021-03-12 14:41:14 +01:00
zimoun 4f617bfb8e
gnu: r-circrnaprofiler: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.4.2.
 2021-03-12 14:41:14 +01:00
Ricardo Wurmus ef8e4f4172
gnu: r-wgcna: Update to 1.70-3. 
* gnu/packages/bioconductor.scm (r-wgcna): Update to 1.70-3.
 2021-03-09 22:05:24 +01:00
Mădălin Ionel Patrașcu 297531ef58
gnu: Add r-circrnaprofiler. 
* gnu/packages/bioconductor.scm (r-circrnaprofiler): New variable.
 2021-03-05 16:07:06 +01:00
Mădălin Ionel Patrașcu 1353e53605
gnu: Add r-universalmotif. 
* gnu/packages/bioconductor.scm (r-universalmotif): New variable.
 2021-03-05 16:07:06 +01:00
Ricardo Wurmus 89d7c8efc6
gnu: Add r-chromvar. 
* gnu/packages/bioconductor.scm (r-chromvar): New variable.
 2021-02-18 15:57:52 +01:00
Ricardo Wurmus 9a38f39ec0
gnu: Add r-motifmatchr. 
* gnu/packages/bioconductor.scm (r-motifmatchr): New variable.
 2021-02-18 15:40:44 +01:00
Ricardo Wurmus 2def2e203f
gnu: Add r-tfbstools. 
* gnu/packages/bioconductor.scm (r-tfbstools): New variable.
 2021-02-18 15:35:38 +01:00
Ricardo Wurmus e6bc150b0c
gnu: Add r-cner. 
* gnu/packages/bioconductor.scm (r-cner): New variable.
 2021-02-18 15:19:46 +01:00
Ricardo Wurmus 311bb4bc3d
gnu: r-delayedmatrixstats: Update to 1.12.3. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.3.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus 8acfd9f3d4
gnu: r-sparsematrixstats: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.2.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus de4fc49270
gnu: r-scran: Update to 1.18.5. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.5.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus cf3e703820
gnu: r-scuttle: Update to 1.0.4. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.0.4.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus 79d51ffeca
gnu: r-beachmat: Update to 2.6.4. 
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.4.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus a1357422c3
gnu: r-rhdf5lib: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.12.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus f7947f8991
gnu: r-hdf5array: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.18.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus 18ebacaa1c
gnu: r-preprocesscore: Update to 1.52.1. 
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.52.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus da109ae738
gnu: r-chemminer: Update to 3.42.1. 
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus 6f37c3ea40
gnu: r-gdsfmt: Update to 1.26.1. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.26.1.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus 9470f901d9
gnu: r-cytolib: Update to 2.2.1. 
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.2.1.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus 691178d67b
gnu: r-multidataset: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.18.1.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus 6d0709231f
gnu: r-clusterprofiler: Update to 3.18.1. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.18.1.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus ebf9ad7984
gnu: r-enrichplot: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.10.2.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus 669ea5ab09
gnu: r-matrixgenerics: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.2.1.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus 61609fb88e
gnu: r-diffbind: Update to 3.0.13. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.13.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus a7d6e1b6a1
gnu: r-ldheatmap: Move to (gnu packages bioconductor). 
This is a follow-up to commit 0c8bb20b7c.

* gnu/packages/cran.scm (r-ldheatmap): Move this from here...
* gnu/packages/bioconductor.scm (r-ldheatmap): ...to here.
 2020-12-29 22:17:37 +01:00
zimoun 610cd6a170
gnu: r-ggbio: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-ggbio): Move from here...
* gnu/packages/bioconductor.scm (r-ggbio): ...to here.
 2020-12-29 17:40:28 +01:00
zimoun 81f481d6cd
gnu: r-gqtlstats: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-gqtlstats): Move from here...
* gnu/packages/bioconductor.scm (r-gqtlstats): ...to here.
 2020-12-29 17:40:28 +01:00
zimoun 61ec8928c7
gnu: r-snpstats: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-snpstats): Move from here...
* gnu/packages/bioconductor.scm (r-snpstats): ...to here.
 2020-12-29 17:40:28 +01:00
zimoun a2c66d18a5
gnu: r-homo-sapiens: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-homo-sapiens): Move from here...
* gnu/packages/bioconductor.scm (r-homo-sapiens): ...to here.
Replace 'string-append' by 'bioconductor-uri' with 'annotation'.
 2020-12-29 17:40:28 +01:00
zimoun 8c2b7c9a2a
gnu: r-erma: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-erma): Move from here...
* gnu/packages/bioconductor.scm (r-erma): ...to here.
 2020-12-29 17:40:28 +01:00
zimoun 8f1237c350
gnu: r-ldblock: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-ldblock): Move from here...
* gnu/packages/bioconductor.scm (r-ldblock): ...to here.
 2020-12-29 17:40:28 +01:00
zimoun 9534e7b706
gnu: r-gqtlstats: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-gqtlstats): Move from here...
* gnu/packages/bioconductor.scm (r-gqtlstats): ...to here.
 2020-12-29 17:40:28 +01:00
zimoun 2a4322f7c3
gnu: r-gviz: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-gviz): Move from here...
* gnu/packages/bioconductor.scm (r-gviz): ...to here.
 2020-12-29 17:40:28 +01:00
zimoun 69a5e066c1
gnu: r-gwascat: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-gwascat): Move from here...
* gnu/packages/bioconductor.scm (r-gwascat): ...to here.
 2020-12-29 17:40:28 +01:00
zimoun 838db0de5e
gnu: r-sushi: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-sushi): Move from here...
* gnu/packages/bioconductor.scm (r-sushi): ...to here.
 2020-12-29 17:40:25 +01:00
Ricardo Wurmus 17235ec28c
gnu: r-nmf: Move from "annotation" to "package" section. 
* gnu/packages/bioconductor.scm (r-nmf): Move variable.
 2020-12-17 11:41:15 +01:00
Ricardo Wurmus eb3c105126
gnu: r-deconstructsigs: Move from "annotation" to "package" section. 
* gnu/packages/bioconductor.scm (r-deconstructsigs): Move variable.
 2020-12-17 11:40:31 +01:00
Ricardo Wurmus e7fa79fd91
gnu: r-pasilla: Move from "annotation" to "experiment" section. 
* gnu/packages/bioconductor.scm (r-pasilla): Move variable.
 2020-12-17 11:39:51 +01:00
Ricardo Wurmus cc54848ad0
gnu: r-ideoviz: Move from "annotation" to "package" section. 
* gnu/packages/bioconductor.scm (r-ideoviz): Move variable.
 2020-12-17 11:39:06 +01:00
Ricardo Wurmus e5610fd9f4
gnu: r-genelendatabase: Move from "annotation" to "experiment" section. 
* gnu/packages/bioconductor.scm (r-genelendatabase): Move variable.
 2020-12-17 11:38:24 +01:00
Ricardo Wurmus 30a4bd3bb3
gnu: r-bluster: Move from "annotation" to "package" section. 
* gnu/packages/bioconductor.scm (r-bluster): Move variable.
 2020-12-17 11:37:47 +01:00
Ricardo Wurmus 1abb6a2a78
gnu: r-cummerbund: Move from "experiment" to "package" section. 
* gnu/packages/bioconductor.scm (r-cummerbund): Move variable.
 2020-12-17 11:37:17 +01:00
Ricardo Wurmus 17d95689b4
gnu: r-coverageview: Move from "experiment" to "package" section. 
* gnu/packages/bioconductor.scm (r-coverageview): Move variable.
 2020-12-17 11:36:26 +01:00
Mădălin Ionel Patrașcu 04a0594662
gnu: Add r-org-eck12-eg-db. 
* gnu/packages/bioconductor.scm (r-org-eck12-eg-db): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-12-17 11:26:53 +01:00
Mădălin Ionel Patrașcu e4b0794e52
gnu: Add r-pathview. 
* gnu/packages/bioconductor.scm (r-pathview): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-12-17 11:26:53 +01:00
Mădălin Ionel Patrașcu 7395458d40
gnu: Add r-kegggraph. 
* gnu/packages/bioconductor.scm (r-kegggraph): New variable.
 2020-12-17 11:26:53 +01:00
Mădălin Ionel Patrașcu eb2f1a7dd9
gnu: Add r-gagedata. 
* gnu/packages/bioconductor.scm (r-gagedata): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-12-17 11:26:53 +01:00
Ricardo Wurmus 3872153a2f
gnu: r-scuttle: Update to 1.0.3. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.0.3.
[propagated-inputs]: Add r-genomicranges.
 2020-12-09 23:30:12 +01:00
Ricardo Wurmus eed728951c
gnu: r-beachmat: Update to 2.6.2. 
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.2.
 2020-12-09 23:30:12 +01:00
Ricardo Wurmus 589ac42212
gnu: r-cicero: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.8.1.
 2020-12-09 23:30:12 +01:00
Ricardo Wurmus 7cda2d415f
gnu: r-biosigner: Update to 1.18.2. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.18.2.
 2020-12-09 23:30:12 +01:00
Ricardo Wurmus 4714787793
gnu: r-biocneighbors: Update to 1.8.2. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.8.2.
[propagated-inputs]: Remove r-rcppannoy.
 2020-12-09 23:30:12 +01:00
Ricardo Wurmus ebf11de4e3
gnu: r-diffbind: Update to 3.0.8. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.8.
 2020-12-09 12:12:48 +01:00
Ricardo Wurmus 4617cc7fd5
gnu: r-rhtslib: Propagate zlib. 
* gnu/packages/bioinformatics.scm (r-rhtslib)[inputs]: Move zlib from here...
[propagated-inputs]: ...to here.
(r-variantannotation, r-rsamtools, r-bamsignals, r-rhdf5,
r-methylkit)[inputs]: Remove zlib.
* gnu/packages/bioconductor.scm (r-diffbind, r-quasr, r-cytolib, r-ncdfflow,
r-flowworkspace, r-seqbias)[inputs]: Remove zlib.
 2020-12-09 12:12:48 +01:00
Ricardo Wurmus 7601015fc9
gnu: r-delayedmatrixstats: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.1.
[propagated-inputs]: Add r-matrixgenerics.
 2020-12-09 12:12:48 +01:00
zimoun 64f9fb308f
gnu: r-bigmelon: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.16.0.
 2020-12-09 12:12:48 +01:00
zimoun 9f6e2bfe1f
gnu: r-watermelon: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.34.0.
 2020-12-09 12:12:47 +01:00
zimoun 8db36c1f68
gnu: r-yarn: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.16.0.
 2020-12-09 12:12:47 +01:00
zimoun adf6edc750
gnu: r-quantro: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.24.0.
 2020-12-09 12:12:47 +01:00
zimoun 4eeaa159d2
gnu: r-lumi: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.42.0.
 2020-12-09 12:12:47 +01:00
zimoun 0b7dd44706
gnu: r-methylumi: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.36.0.
 2020-12-09 12:12:47 +01:00
zimoun e5a4198bc3
gnu: r-minfi: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.36.0.
 2020-12-09 12:12:47 +01:00
zimoun 45dfb75166
gnu: Add r-catalyst. 
* gnu/packages/bioconductor.scm (r-catalyst): New variable.
 2020-12-09 12:12:47 +01:00
zimoun 43bf50ecae
gnu: r-ggcyto: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.18.0.
 2020-12-09 12:12:47 +01:00
zimoun b856a48768
gnu: r-scdd: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.14.0.
 2020-12-09 12:12:47 +01:00
zimoun 3f04b8167b
gnu: r-chipcomp: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.20.0.
 2020-12-09 12:12:47 +01:00
zimoun 1174317e03
gnu: r-pcatools: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.2.0.
 2020-12-09 12:12:47 +01:00
zimoun b03c955c6f
gnu: r-scran: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.0.
[propagated-inputs]: Add r-bluster, r-scuttle.  Remove r-iranges.

Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
 2020-12-09 12:12:47 +01:00
zimoun d4b5d18684
gnu: r-scater: Update to 1.18.3. 
* gnu/packages/bioconductor.scm (r-scater): Update to 1.18.3.
[propagated-inputs]: Add r-gridextra, r-scutlle.  Remove r-beachmat, r-rcpp.

Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
 2020-12-09 12:12:46 +01:00
Ricardo Wurmus 0e60dda0ae
gnu: Add r-scuttle. 
* gnu/packages/bioconductor.scm (r-scuttle): New variable.
 2020-12-09 12:12:46 +01:00
zimoun 10c87ecf77
gnu: r-delayedmatrixstats: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.0.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
 2020-12-09 12:12:46 +01:00
zimoun 4ef898d449
gnu: r-singlecellexperiment: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.12.0.
 2020-12-09 12:12:46 +01:00
zimoun d0db04fcaf
gnu: r-yapsa: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.16.0.
 2020-12-09 12:12:46 +01:00
zimoun 798ec28916
gnu: r-biocsingular: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.6.0.
 2020-12-09 12:12:46 +01:00
zimoun dd9341ffa3
gnu: r-genomicinteractions: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.24.0.
 2020-12-09 12:12:46 +01:00
zimoun 35dae95110
gnu: r-interactionset: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.18.0.
 2020-12-09 12:12:46 +01:00
Ricardo Wurmus 5e719988f2
gnu: Add r-sparsematrixstats. 
* gnu/packages/bioconductor.scm (r-sparsematrixstats): New variable.
 2020-12-09 12:12:46 +01:00
Roel Janssen a23310ffc2
gnu: Add r-bluster. 
* gnu/packages/bioconductor.scm (r-bluster): New variable.
 2020-12-09 12:12:45 +01:00
Roel Janssen aca4ebe40a
gnu: r-annaffy: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.62.0.
 2020-12-09 12:12:45 +01:00
zimoun 16f16b5e21
gnu: Add r-msmstests. 
* gnu/packages/bioconductor.scm (r-msmstests): New variable.
 2020-12-09 12:12:43 +01:00
zimoun e520c68fa9
gnu: Add r-msmseda. 
* gnu/packages/bioconductor.scm (r-msmseq): New variable.
 2020-12-09 12:12:43 +01:00
Roel Janssen fe4ce29a5c
gnu: r-beachmat: Update to 2.6.1. 
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.1.
 2020-12-09 12:12:36 +01:00
zimoun 0022e9f4c0
gnu: r-ncdfflow: Fix r-rhdf5libs link. 
* gnu/packages/bioconductor.scm (r-ncdfflow): [arguments]: Avoid to have a
plain directory on the list of libraries to link.

Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
 2020-12-09 12:12:36 +01:00
zimoun 2b224f904a
gnu: r-cytoml: Fix r-rhdf5libs linking. 
* gnu/packages/bioconductor.scm (r-cytoml): [arguments]: Avoid to have
a plain directory on the list of libraries to link.
 2020-12-09 12:12:36 +01:00
zimoun ece564f07d
gnu: r-flowworkspace: Fix r-rhdf5libs linking. 
* gnu/packages/bioconductor.scm (r-flowworkspace): [arguments]: Avoid to have
a plain directory on the list of libraries to link.
 2020-12-09 12:12:36 +01:00
zimoun 26cf5eb568
gnu: r-hdf5array: Fix r-rhdf5libs linking. 
* gnu/packages/bioconductor.scm (r-hdf5array): [arguments]: Avoid to have a
plain directory on the list of libraries to link.

Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
 2020-12-09 12:12:36 +01:00
zimoun b58c4e7613
gnu: r-cytolib: Fix r-rhdf5libs linking. 
* gnu/packages/bioconductor.scm (r-cytolib): [arguments]: Avoid to have a
plain directory on the list of libraries to link.

Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
 2020-12-09 12:12:36 +01:00
Roel Janssen c5ae5c1c40
gnu: r-rhdf5lib: Fix build. 
* gnu/packages/bioconductor.scm (r-rhdf5lib)[arguments]: Fix build.
 2020-12-09 12:12:36 +01:00
zimoun 79cb6af375
gnu: r-rhdf5lib: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.12.0.
 2020-12-09 12:12:36 +01:00
zimoun 5992c25e7f
gnu: r-hdf5array: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.18.0.
 2020-12-09 12:12:36 +01:00
Roel Janssen c8da013780
gnu: Add r-matrixgenerics. 
* gnu/packages/bioconductor.scm (r-matrixgenerics): New variable.
 2020-12-09 12:12:36 +01:00
zimoun ed44a72acf
gnu: r-hitc: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.34.0.
 2020-12-09 12:12:35 +01:00
zimoun 7105658e9c
gnu: r-fithic: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.16.0.
 2020-12-09 12:12:35 +01:00
zimoun b6348b0edf
gnu: r-rgraphviz: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.34.0.
 2020-12-09 12:12:35 +01:00
zimoun 8fa30df02a
gnu: r-preprocesscore: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.52.0.
 2020-12-09 12:12:35 +01:00
zimoun e5b2c80dc2
gnu: r-fourcseq: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-fourcseq): Update to 1.24.0.
 2020-12-09 12:12:35 +01:00
zimoun 3cacc3bdce
gnu: r-icens: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-icens): Update to 1.62.0.
 2020-12-09 12:12:35 +01:00
zimoun 126846a0da
gnu: r-m3c: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.12.0.
 2020-12-09 12:12:35 +01:00
zimoun 7a242042ae
gnu: r-rgreat: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-rgreat): Update to 1.22.0.
 2020-12-09 12:12:35 +01:00
zimoun 15be98c136
gnu: r-biodist: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.62.0.
 2020-12-09 12:12:34 +01:00
zimoun 7891c83c3e
gnu: r-biocworkflowtools: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.16.0.
 2020-12-09 12:12:34 +01:00
zimoun feb0cbf402
gnu: r-biocset: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.4.0.
[propagated-inputs]: Add r-s4vectors; remove r-rtracklayer.
 2020-12-09 12:12:34 +01:00
zimoun ff4834c065
gnu: Add r-biocio. 
* gnu/packages/bioconductor.scm (r-biocio): New variable.
 2020-12-09 12:12:34 +01:00
zimoun 6a5d8cadee
gnu: r-biocpkgtools: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.8.0.
 2020-12-09 12:12:34 +01:00
zimoun 072f722f8e
gnu: r-biocor: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.14.0.
 2020-12-09 12:12:34 +01:00
zimoun e29b15ee97
gnu: r-bioconcotk: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.10.0.
 2020-12-09 12:12:34 +01:00
zimoun 13d0b780c1
gnu: r-multiassayexperiment: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.16.0.
 2020-12-09 12:12:34 +01:00
zimoun 49a728581f
gnu: r-experimenthub: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.16.0.
 2020-12-09 12:12:34 +01:00
zimoun abc18fc596
gnu: r-biocgraph: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.52.0.
 2020-12-09 12:12:34 +01:00
zimoun 7dced9ad01
gnu: r-bioccasestudies: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-bioccasestudies): Update to 1.52.0.
 2020-12-09 12:12:34 +01:00
zimoun b0f3bfe4ae
gnu: r-ebarrays: Update to 2.54.0. 
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.54.0.
 2020-12-09 12:12:34 +01:00
zimoun a4f4a55283
gnu: r-reactomepa: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.34.0.
 2020-12-09 12:12:34 +01:00
zimoun 26224e09ae
gnu: r-graphite: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.36.0.
 2020-12-09 12:12:34 +01:00
zimoun 95e30d8f6e
gnu: r-biobroom: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.22.0.
 2020-12-09 12:12:33 +01:00
zimoun 2f36b0406e
gnu: r-bioassayr: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.0.
 2020-12-09 12:12:33 +01:00
zimoun 95ef268142
gnu: r-chemminer: Update to 3.42.0. 
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.0.
 2020-12-09 12:12:33 +01:00
zimoun 1e28867803
gnu: r-bigpint: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.6.0.
 2020-12-09 12:12:33 +01:00
zimoun e80f8262f6
gnu: r-bigmemoryextras: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-bigmemoryextras): Update to 1.38.0.
 2020-12-09 12:12:33 +01:00
zimoun 0f94a9edb0
gnu: r-biggr: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.26.0.
 2020-12-09 12:12:33 +01:00
zimoun 249b703056
gnu: r-hyperdraw: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.42.0.
 2020-12-09 12:12:33 +01:00
zimoun 294fd58a42
gnu: r-hypergraph: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.62.0.
 2020-12-09 12:12:33 +01:00
zimoun 3320f044a3
gnu: r-rsbml: Update to 2.48.0. 
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.48.0.
 2020-12-09 12:12:33 +01:00
zimoun d57be63323
gnu: r-bifet: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.10.0.
 2020-12-09 12:12:33 +01:00
zimoun 4ec665693d
gnu: r-bicare: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.48.0.
 2020-12-09 12:12:33 +01:00
zimoun 2219bef12f
gnu: r-bhc: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.42.0.
 2020-12-09 12:12:33 +01:00
zimoun 3cebe2745a
gnu: r-bgx: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.56.0.
 2020-12-09 12:12:33 +01:00
zimoun fad5da32dc
gnu: r-bgmix: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.50.0.
 2020-12-09 12:12:32 +01:00
zimoun fa7e242910
gnu: r-unifiedwmwqpcr: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.26.0.
 2020-12-09 12:12:32 +01:00
zimoun 949626f209
gnu: r-htqpcr: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.44.0.
 2020-12-09 12:12:32 +01:00
zimoun 44ecd5f77f
gnu: r-variancepartition: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.20.0.
 2020-12-09 12:12:32 +01:00
zimoun 45ea773f94
gnu: r-variantfiltering: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.26.0.
 2020-12-09 12:12:32 +01:00
zimoun 87f704b43c
gnu: r-timeseriesexperiment: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.8.0.
 2020-12-09 12:12:32 +01:00
zimoun fd7e23b551
gnu: r-wavcluster: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.24.0.
 2020-12-09 12:12:32 +01:00
zimoun 0c53f27dd6
gnu: r-reqon: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.36.0.
 2020-12-09 12:12:32 +01:00
zimoun 42e00c0923
gnu: r-seqbias: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.38.0.
 2020-12-09 12:12:32 +01:00
zimoun a50779b8a3
gnu: r-gdsfmt: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.26.0.
 2020-12-09 12:12:32 +01:00
zimoun e7b61ba7f6
gnu: r-roc: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-roc): Update to 1.66.0.
 2020-12-09 12:12:31 +01:00
zimoun 5d1bd61137
gnu: r-genie3: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.12.0.
 2020-12-09 12:12:31 +01:00
zimoun 7954fe16a0
gnu: r-cicero: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.8.0.
 2020-12-09 12:12:31 +01:00
zimoun 6481357330
gnu: r-rcistarget: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.10.0.
 2020-12-09 12:12:31 +01:00
zimoun fafaeab48b
gnu: r-depecher: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.6.0.
 2020-12-09 12:12:31 +01:00
zimoun 0e78ce36f0
gnu: r-mixomics: Update to 6.14.0. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.14.0.
 2020-12-09 12:12:31 +01:00
zimoun 1f7ddaf0fb
gnu: r-flowsom: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.22.0.
 2020-12-09 12:12:31 +01:00
zimoun 63033b159a
gnu: r-cytoml: Update to 2.2.1. 
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.2.1.
 2020-12-09 12:12:31 +01:00
zimoun 5abf0a0dd2
gnu: r-opencyto: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.2.0.
 2020-12-09 12:12:30 +01:00
zimoun fd11c7b80f
gnu: r-flowstats: Update to 4.2.0. 
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.2.0.
 2020-12-09 12:12:30 +01:00
zimoun 1b347814f8
gnu: r-flowworkspace: Update to 4.2.0. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.2.0.
[inputs]: Add zlib.
[propagated-inputs]: Add r-aws-s3 and r-aws-signature.  Remove r-stringr.
 2020-12-09 12:12:30 +01:00
zimoun 5bab0b7eee
gnu: r-rprotobuflib: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.2.0.
 2020-12-09 12:12:30 +01:00
zimoun 33c5b6d7ca
gnu: r-flowclust: Update to 3.28.0. 
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.28.0.
 2020-12-09 12:12:30 +01:00
zimoun d5a53ab76b
gnu: r-flowviz: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.54.0.
 2020-12-09 12:12:30 +01:00
zimoun eac1eaaa0f
gnu: r-ncdfflow: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.36.0.
 2020-12-09 12:12:30 +01:00
zimoun 2cd78131cc
gnu: r-flowmeans: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.50.0.
 2020-12-09 12:12:30 +01:00
zimoun 3f0e93b47b
gnu: r-flowcore: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.2.0.
[propagated-inputs]: Add r-s4vectors.
 2020-12-09 12:12:29 +01:00
zimoun c6ccd4fcb1
gnu: r-cytolib: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.2.0.
[native-inputs]: Add pkg-config.
 2020-12-09 12:12:29 +01:00
zimoun a49024e6af
gnu: r-consensusclusterplus: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.54.0.
 2020-12-09 12:12:29 +01:00
zimoun d361222d8f
gnu: r-flowutils: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.54.0.
 2020-12-09 12:12:29 +01:00
zimoun d764f1e7fe
gnu: r-rsubread: Update to 2.4.2. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.4.2.
 2020-12-09 12:12:29 +01:00
zimoun 458aa44622
gnu: r-annotatr: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.16.0.
 2020-12-09 12:12:29 +01:00
zimoun 26e417063f
gnu: r-biosigner: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.18.0.
 2020-12-09 12:12:29 +01:00
zimoun 59daf6ed12
gnu: r-ropls: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.22.0.
 2020-12-09 12:12:29 +01:00
zimoun e78e04d2ee
gnu: r-multidataset: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.18.0.
 2020-12-09 12:12:29 +01:00
zimoun 979b1edc52
gnu: r-birewire: Update to 3.22.0. 
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.22.0.
 2020-12-09 12:12:29 +01:00
zimoun d8a7bf768f
gnu: r-rqc: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.24.0.
 2020-12-09 12:12:29 +01:00
zimoun 1b4c271970
gnu: r-quasr: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.30.0.
 2020-12-09 12:12:29 +01:00
zimoun c36d888f42
gnu: r-rhisat2: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.6.0.
 2020-12-09 12:12:28 +01:00
zimoun ca0271c550
gnu: r-sgseq: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.24.0.
 2020-12-09 12:12:28 +01:00
zimoun ea86d93e8c
gnu: r-rbowtie: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.30.0.
 2020-12-09 12:12:28 +01:00
zimoun 4bc0675de0
gnu: r-iclusterplus: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.26.0.
 2020-12-09 12:12:28 +01:00
zimoun e65e81d285
gnu: r-biocfilecache: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.14.0.
 2020-12-09 12:12:28 +01:00
zimoun 0067589a9e
gnu: r-arrmnormalization: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.30.0.
 2020-12-09 12:12:28 +01:00
zimoun d115db7f7d
gnu: r-progeny: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.12.0.
 2020-12-09 12:12:28 +01:00
zimoun 9834d1ab38
gnu: r-rbowtie2: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.12.0.
 2020-12-09 12:12:28 +01:00
zimoun 59fafa19f5
gnu: r-zfpkm: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.12.0.
 2020-12-09 12:12:28 +01:00
zimoun d176ad34d7
gnu: r-webbioc: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.62.0.
 2020-12-09 12:12:28 +01:00
zimoun ba53681a46
gnu: r-widgettools: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.68.0.
 2020-12-09 12:12:28 +01:00
zimoun 397bcd2ccd
gnu: r-wiggleplotr: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.14.0.
 2020-12-09 12:12:28 +01:00
zimoun dc7c6368ed
gnu: r-wrench: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.8.0.
 2020-12-09 12:12:28 +01:00
zimoun a3af40eaf5
gnu: r-xcms: Update to 3.12.0. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.12.0.
[propagated-inputs]: Add r-mscoreutils.
 2020-12-09 12:12:27 +01:00
zimoun fa2201c108
gnu: Add r-mscoreutils. 
* gnu/packages/bioconductor.scm (r-mscoreutils): New variable.
 2020-12-09 12:12:27 +01:00
zimoun f4e19e62bb
gnu: r-massspecwavelet: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.56.0.
 2020-12-09 12:12:27 +01:00
zimoun 7f71341e5d
gnu: r-xbseq: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.22.0.
 2020-12-09 12:12:27 +01:00
zimoun 72476adef5
gnu: r-roar: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-roar): Update to 1.26.0.
 2020-12-09 12:12:27 +01:00
zimoun 94dee0af25
gnu: r-yaqcaffy: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.50.0.
 2020-12-09 12:12:27 +01:00
zimoun 48aaef23b3
gnu: r-simpleaffy: Update to 2.66.0. 
* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.66.0.
 2020-12-09 12:12:27 +01:00
zimoun 3d41f0c297
gnu: r-gcrma: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.62.0.
 2020-12-09 12:12:27 +01:00
zimoun 36f3a19ae6
gnu: r-somaticsignatures: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.26.0.
 2020-12-09 12:12:27 +01:00
zimoun 0836ef6b69
gnu: r-gtrellis: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.22.0.
 2020-12-09 12:12:27 +01:00
zimoun 65ba4ba5f1
gnu: r-yamss: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.16.0.
 2020-12-09 12:12:27 +01:00
zimoun ba0bf98dff
gnu: r-ebimage: Update to 4.32.0. 
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.32.0.
 2020-12-09 12:12:27 +01:00
zimoun ff8b915377
gnu: r-aucell: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.12.0.
 2020-12-09 12:12:26 +01:00
zimoun 85c6636bac
gnu: r-allelicimbalance: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.28.0.
 2020-12-09 12:12:26 +01:00
zimoun 577915421d
gnu: r-annotationtools: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.64.0.
 2020-12-09 12:12:26 +01:00
zimoun bc12a4b660
gnu: r-annotationfuncs: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.40.0.
 2020-12-09 12:12:26 +01:00