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1224 Commits (771e1e7521fddc1f36f966c4b418f69c13c1aeea)

Author SHA1 Message Date
zimoun ba53681a46
gnu: r-widgettools: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.68.0.
 2020-12-09 12:12:28 +01:00
zimoun 397bcd2ccd
gnu: r-wiggleplotr: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.14.0.
 2020-12-09 12:12:28 +01:00
zimoun dc7c6368ed
gnu: r-wrench: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.8.0.
 2020-12-09 12:12:28 +01:00
zimoun a3af40eaf5
gnu: r-xcms: Update to 3.12.0. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.12.0.
[propagated-inputs]: Add r-mscoreutils.
 2020-12-09 12:12:27 +01:00
zimoun fa2201c108
gnu: Add r-mscoreutils. 
* gnu/packages/bioconductor.scm (r-mscoreutils): New variable.
 2020-12-09 12:12:27 +01:00
zimoun f4e19e62bb
gnu: r-massspecwavelet: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.56.0.
 2020-12-09 12:12:27 +01:00
zimoun 7f71341e5d
gnu: r-xbseq: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.22.0.
 2020-12-09 12:12:27 +01:00
zimoun 72476adef5
gnu: r-roar: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-roar): Update to 1.26.0.
 2020-12-09 12:12:27 +01:00
zimoun 94dee0af25
gnu: r-yaqcaffy: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.50.0.
 2020-12-09 12:12:27 +01:00
zimoun 48aaef23b3
gnu: r-simpleaffy: Update to 2.66.0. 
* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.66.0.
 2020-12-09 12:12:27 +01:00
zimoun 3d41f0c297
gnu: r-gcrma: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.62.0.
 2020-12-09 12:12:27 +01:00
zimoun 36f3a19ae6
gnu: r-somaticsignatures: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.26.0.
 2020-12-09 12:12:27 +01:00
zimoun 0836ef6b69
gnu: r-gtrellis: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.22.0.
 2020-12-09 12:12:27 +01:00
zimoun 65ba4ba5f1
gnu: r-yamss: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.16.0.
 2020-12-09 12:12:27 +01:00
zimoun ba0bf98dff
gnu: r-ebimage: Update to 4.32.0. 
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.32.0.
 2020-12-09 12:12:27 +01:00
zimoun ff8b915377
gnu: r-aucell: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.12.0.
 2020-12-09 12:12:26 +01:00
zimoun 85c6636bac
gnu: r-allelicimbalance: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.28.0.
 2020-12-09 12:12:26 +01:00
zimoun 577915421d
gnu: r-annotationtools: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.64.0.
 2020-12-09 12:12:26 +01:00
zimoun bc12a4b660
gnu: r-annotationfuncs: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.40.0.
 2020-12-09 12:12:26 +01:00
zimoun 8a7f7112f1
gnu: r-abaenrichment: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.20.0.
 2020-12-09 12:12:26 +01:00
zimoun c3b69d6333
gnu: r-gofuncr: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.10.0.
 2020-12-09 12:12:26 +01:00
zimoun 2ba61c67aa
gnu: r-atacseqqc: Update to 1.14.4. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.14.4.
 2020-12-09 12:12:26 +01:00
zimoun 392806183d
gnu: r-genomicscores: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.2.0.
 2020-12-09 12:12:26 +01:00
zimoun 4b4cd2b8a2
gnu: r-motifstack: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.34.0.
 2020-12-09 12:12:26 +01:00
zimoun 301e549c22
gnu: r-motifbreakr: Update to 2.4.0. 
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.4.0.
 2020-12-09 12:12:26 +01:00
zimoun a2bae16780
gnu: r-motifdb: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.32.0.
 2020-12-09 12:12:26 +01:00
zimoun 41071edcac
gnu: r-rgadem: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.38.0.
 2020-12-09 12:12:26 +01:00
zimoun d5dcf1bb4b
gnu: r-bacon: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.18.0.
 2020-12-09 12:12:26 +01:00
zimoun 8816139e84
gnu: r-abseqr: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.8.0.
 2020-12-09 12:12:26 +01:00
zimoun 68efaafe32
gnu: r-a4: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-a4): Update to 1.38.0.
 2020-12-09 12:12:25 +01:00
zimoun 564d4279f2
gnu: r-a4base: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.38.0.
 2020-12-09 12:12:25 +01:00
zimoun 2fb8298c80
gnu: r-a4reporting: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.38.0.
 2020-12-09 12:12:25 +01:00
zimoun 85155e2ed9
gnu: r-a4preproc: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.38.0.
 2020-12-09 12:12:25 +01:00
zimoun fa51705f19
gnu: r-a4classif: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.38.0.
 2020-12-09 12:12:25 +01:00
zimoun c47a8cd9e1
gnu: r-a4core: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.38.0.
 2020-12-09 12:12:25 +01:00
zimoun 4f82931de4
gnu: r-mlinterfaces: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.70.0.
 2020-12-09 12:12:25 +01:00
zimoun 3fd84a461d
gnu: r-clusterprofiler: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.18.0.
 2020-12-09 12:12:25 +01:00
Roel Janssen eb3d17eb99
gnu: r-enrichplot: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.10.1.
[propagated-inputs]: Remove r-annotationdbi, r-europepmc, r-ggplotify,
r-ggridges, and r-gridextra; add r-magrittr and r-shadowtext.
 2020-12-09 12:12:25 +01:00
zimoun aeb1d56f8f
gnu: r-dose: Update to 3.16.0. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.16.0.
 2020-12-09 12:12:25 +01:00
zimoun d68a9ffa68
gnu: r-fgsea: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.16.0.
 2020-12-09 12:12:25 +01:00
zimoun 7dabc6298f
gnu: r-sigpathway: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.58.0.
 2020-12-09 12:12:25 +01:00
zimoun 33c905b9c0
gnu: r-anota: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-anota): Update to 1.38.0.
 2020-12-09 12:12:24 +01:00
zimoun b2084e4d21
gnu: r-gosemsim: Update to 2.16.1. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.16.1.
 2020-12-09 12:12:24 +01:00
zimoun 9813d24ddf
gnu: r-heatplus: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.36.0.
 2020-12-09 12:12:24 +01:00
zimoun 67837d4afe
gnu: r-varianttools: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.32.0.
 2020-12-09 12:12:24 +01:00
zimoun 2a1a6d74d6
gnu: r-ioniser: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.14.0.
 2020-12-09 12:12:24 +01:00
zimoun 37e09611f2
gnu: r-linnorm: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.14.0.
 2020-12-09 12:12:24 +01:00
zimoun 50c5fee6b5
gnu: r-bumphunter: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.32.0.
 2020-12-09 12:12:24 +01:00
zimoun 0fd830feaa
gnu: r-siggenes: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.64.0.
 2020-12-09 12:12:24 +01:00
zimoun e89966e977
gnu: r-illuminaio: Update to 0.32.0. 
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.32.0.
 2020-12-09 12:12:24 +01:00
zimoun 5c4edeef02
gnu: r-geoquery: Update to 2.58.0. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.58.0.
 2020-12-09 12:12:24 +01:00
zimoun bde9dc5b97
gnu: r-scone: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.14.0.
 2020-12-09 12:12:24 +01:00
zimoun 8396c45eda
gnu: r-noiseq: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.34.0.
 2020-12-09 12:12:24 +01:00
zimoun 38bc0bf808
gnu: r-monocle: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.18.0.
 2020-12-09 12:12:24 +01:00
zimoun 532b106856
gnu: r-mast: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-mast): Update to 1.16.0.
 2020-12-09 12:12:24 +01:00
zimoun e26b5eefda
gnu: r-icobra: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.18.0.
 2020-12-09 12:12:23 +01:00
zimoun 95b1f3507a
gnu: r-ihw: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.18.0.
 2020-12-09 12:12:23 +01:00
zimoun 378d67c950
gnu: r-lpsymphony: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.18.0.
 2020-12-09 12:12:23 +01:00
zimoun 37da451316
gnu: r-karyoploter: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.16.0.
 2020-12-09 12:12:23 +01:00
zimoun 939c888dac
gnu: r-ebseq: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.30.0.
 2020-12-09 12:12:23 +01:00
zimoun 850f4c2a36
gnu: r-dnacopy: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.64.0.
 2020-12-09 12:12:23 +01:00
zimoun 43d8db0462
gnu: r-copynumber: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.30.0.
 2020-12-09 12:12:23 +01:00
zimoun ff4d080422
gnu: r-chipexoqual: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.14.0.
 2020-12-09 12:12:23 +01:00
zimoun 967fc58392
gnu: r-savr: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-savr): Update to 1.28.0.
 2020-12-09 12:12:23 +01:00
zimoun 4217307fb3
gnu: r-destiny: Update to 3.4.0. 
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.4.0.
[propagated-inputs]: Remove r-nbconvertr.
 2020-12-09 12:12:23 +01:00
zimoun bbae34aae7
gnu: r-biocneighbors: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.8.0.
 2020-12-09 12:12:23 +01:00
zimoun a55b1622c5
gnu: r-ruvseq: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.24.0.
 2020-12-09 12:12:23 +01:00
zimoun 874a774fcc
gnu: r-dnabarcodes: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.20.0.
 2020-12-09 12:12:22 +01:00
zimoun 41d6b41feb
gnu: r-inspect: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.20.0.
 2020-12-09 12:12:22 +01:00
zimoun 1c9bdfcf3c
gnu: r-plgem: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.62.0.
 2020-12-09 12:12:22 +01:00
zimoun 0ef40b23b6
gnu: r-rots: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.18.0.
 2020-12-09 12:12:22 +01:00
zimoun 3dab4570fa
gnu: r-glimma: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.0.0.
 2020-12-09 12:12:22 +01:00
zimoun c97bcfbd78
gnu: r-goseq: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.42.0.
 2020-12-09 12:12:22 +01:00
zimoun d27dfbf7f9
gnu: r-ctc: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.64.0.
 2020-12-09 12:12:22 +01:00
zimoun 3813c9fe56
gnu: r-riboseqr: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.24.0.
 2020-12-09 12:12:22 +01:00
zimoun 03b655c524
gnu: r-riboprofiling: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.20.0.
 2020-12-09 12:12:22 +01:00
zimoun 63572b0c12
gnu: r-bayseq: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.24.0.
 2020-12-09 12:12:22 +01:00
zimoun 3b6484097c
gnu: r-qdnaseq: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.26.0.
 2020-12-09 12:12:22 +01:00
zimoun 724000356e
gnu: r-cghcall: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.52.0.
 2020-12-09 12:12:22 +01:00
zimoun ee052d05f1
gnu: r-cghbase: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.50.0.
 2020-12-09 12:12:22 +01:00
zimoun 6e6c627230
gnu: r-marray: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.68.0.
 2020-12-09 12:12:22 +01:00
zimoun d068d96743
gnu: r-chippeakanno: Update to 3.24.0. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.24.0.
 2020-12-09 12:12:21 +01:00
zimoun f519b4dc01
gnu: r-graph: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.68.0.
 2020-12-09 12:12:21 +01:00
zimoun 1e6920c521
gnu: r-multtest: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.46.0.
 2020-12-09 12:12:21 +01:00
Roel Janssen 341ebaaa01
gnu: r-diffbind: Update to 3.0.7. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.7.
[propagated-inputs]: Add r-apeglm, r-ashr, and r-greylistchip; remove r-edger.
 2020-12-09 12:12:21 +01:00
Roel Janssen 6e396c4bff
gnu: Add r-greylistchip. 
* gnu/packages/bioconductor.scm (r-greylistchip): New variable.
 2020-12-09 12:12:21 +01:00
Roel Janssen 3b399e514f
gnu: Add r-apeglm. 
* gnu/packages/bioconductor.scm (r-apeglm): New variable.
 2020-12-09 12:12:21 +01:00
Roel Janssen a0df9b93ef
gnu: Add r-rcppnumerical. 
* gnu/packages/bioconductor.scm (r-rcppnumerical): New variable.
 2020-12-09 12:12:21 +01:00
zimoun e9b60a2901
gnu: r-qvalue: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.22.0.
 2020-12-09 12:12:21 +01:00
zimoun 9af6fdf861
gnu: r-oligo: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.54.0.
 2020-12-09 12:12:21 +01:00
zimoun 464df5ccbb
gnu: r-oligoclasses: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.52.0.
 2020-12-09 12:12:21 +01:00
zimoun d72c4c98c8
gnu: r-geneplotter: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.68.0.
 2020-12-09 12:12:20 +01:00
zimoun c03c76344e
gnu: r-reportingtools: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.30.0.
 2020-12-09 12:12:20 +01:00
zimoun d1ff3604b7
gnu: r-regioner: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.22.0.
 2020-12-09 12:12:20 +01:00
zimoun fa7578b32f
gnu: r-hpar: Update to 1.32.1. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.32.1.
 2020-12-09 12:12:20 +01:00
zimoun 7d56302332
gnu: r-annotate: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.68.0.
[propagated-inputs]: Remove 'r-rcurl', add 'r-httr'.
 2020-12-09 12:12:20 +01:00
zimoun 8e6a2c328f
gnu: r-affxparser: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.62.0.
 2020-12-09 12:12:20 +01:00
zimoun a92219b45f
gnu: r-affycoretools: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.62.0.
 2020-12-09 12:12:20 +01:00
zimoun 3e82f9ccaf
gnu: r-affycontam: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.48.0.
 2020-12-09 12:12:20 +01:00
zimoun fa2d16cc27
gnu: r-affycompatible: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.50.0.
 2020-12-09 12:12:20 +01:00
zimoun c472549f67
gnu: r-affycomp: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.66.0.
 2020-12-09 12:12:20 +01:00
zimoun aa311eaa74
gnu: r-biocgenerics: Update to 0.36.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.36.0.
 2020-12-09 12:12:20 +01:00
zimoun 70ab99096d
gnu: r-biocversion: Update to 3.12.0. 
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.12.0.
 2020-12-09 12:12:20 +01:00
zimoun a3e2e53837
gnu: r-cummerbund: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.32.0.
 2020-12-09 12:12:20 +01:00
zimoun 5ef637ddc7
gnu: r-coverageview: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.28.0.
 2020-12-09 12:12:20 +01:00
zimoun 25f4e6520e
gnu: r-ideoviz: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.26.0.
 2020-12-09 12:12:20 +01:00
Ricardo Wurmus a07717cc8b
gnu: Add r-perfmeas. 
* gnu/packages/bioconductor.scm (r-perfmeas): New variable.
 2020-10-30 21:49:33 +01:00
Ricardo Wurmus 7337615d1c
gnu: r-bgx: Update to 1.54.1. 
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.54.1.
 2020-10-06 13:23:38 +02:00
Ricardo Wurmus 40b86e20eb
gnu: r-xcms: Update to 3.10.2. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.10.2.
 2020-10-06 13:23:38 +02:00
Ricardo Wurmus 56bca8965a
gnu: r-atacseqqc: Update to 1.12.5. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.12.5.
 2020-10-06 13:23:37 +02:00
Ricardo Wurmus f000fab88f
gnu: r-gosemsim: Update to 2.14.2. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.14.2.
 2020-10-06 13:23:37 +02:00
Ricardo Wurmus d7314e4747
gnu: r-karyoploter: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.14.1.
 2020-10-06 13:23:37 +02:00
Ricardo Wurmus dce2d06fcc
gnu: r-diffbind: Update to 2.16.2. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.16.2.
 2020-10-06 13:23:34 +02:00
Ricardo Wurmus d7cfdc1229
gnu: r-fhtest: Update to 1.5. 
* gnu/packages/bioconductor.scm (r-fhtest): Update to 1.5.
 2020-10-06 00:34:56 +02:00
Ricardo Wurmus 65e361f98f
gnu: r-interval: Update to 1.1-0.7. 
* gnu/packages/bioconductor.scm (r-interval): Update to 1.1-0.7.
 2020-10-06 00:34:56 +02:00
Ricardo Wurmus 5412da848e
gnu: r-activedriverwgs: Update to 1.1.1. 
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.1.1.
 2020-10-06 00:34:56 +02:00
Efraim Flashner 1628d57bb5
gnu: Fix package references. 
* gnu/packages/algebra.scm (iml)[inputs]: Correctly refer to package
inputs.
* gnu/packages/astronomy.scm (xplanet),
* gnu/packages/audio.scm (redkite, libaudec, lv2lint, lv2toweb),
* gnu/packages/bioconductor.scm (r-cummerbund),
* gnu/packages/chicken.scm (chicken),
* gnu/packages/conky.scm (conky),
* gnu/packages/cran.scm (r-latex2exp),
* gnu/packages/crates-io.scm (rust-rgb),
* gnu/packages/databases.scm (mariadb),
* gnu/packages/diffoscope.scm (reprotest),
* gnu/packages/file-systems.scm (glusterfs),
* gnu/packages/finance.scm (electron-cash),
* gnu/packages/games.scm (rinutils, ksudoku, kdiamond, kigo),
* gnu/packages/geo.scm (grass),
* gnu/packages/gnome.scm (libmediaart, gnome-contacts, geoclue),
* gnu/packages/gnucash.scm (aqbanking),
* gnu/packages/image.scm (mtpaint),
* gnu/packages/kde-internet.scm (kopete, ktorrent),
* gnu/packages/kde-utils.scm (kmousetool, kmouth, kronometer),
* gnu/packages/linphone.scm (liblinphone),
* gnu/packages/maths.scm (ppl),
* gnu/packages/mercury.scm (mercury-minimal),
* gnu/packages/music.scm (bjumblr, bschaffl, lsp-plugins,
spectacle-analyzer, helm, tap-lv2, wolf-shaper, shiru-lv2),
* gnu/packages/networking.scm (restinio),
* gnu/packages/prolog.scm (swi-prolog),
* gnu/packages/python-web.scm (gunicorn),
* gnu/packages/python-xyz.scm (python-docusign-esign),
* gnu/packages/ruby.scm (ruby-cucumber, ruby_version, ruby-addressable),
* gnu/packages/sagemath.scm (python-cypari2),
* gnu/packages/skarnet.scm (s6-linux-init),
* gnu/packages/vpn.scm (sshuttle),
* gnu/packages/web.scm (libcyaml),
* gnu/packages/xdisorg.scm (kbdd),
* gnu/packages/xorg.scm (xpra): Same.
 2020-09-30 09:28:26 +03:00
Roel Janssen 871539f3ad
gnu: r-chippeakanno: Update to 3.22.4. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.22.4.
 2020-09-28 17:06:56 +02:00
Tobias Geerinckx-Rice 7230f6d5dd
gnu: Fix typoes in package descriptions. 
* gnu/packages/audio.scm (caps-plugins-lv2)[synopsis]: Fix typo.
* gnu/packages/bioconductor.scm (r-karyoploter, r-anota, r-gcrma)
(r-bigmemoryextras)[description]: Likewise.
* gnu/packages/cran.scm (r-geometry)[synopsis]: Likewise.
(r-stringdist, r-patchwork, r-depth, r-tea)[description]: Likewise.
* gnu/packages/crates-io.scm (rust-assert-fs-0.11, rust-notify-4)
(rust-tokio-fs-0.1)[synopsis, description]: Likewise.
(rust-blas-sys-0.7)[description]: Likewise.
(rust-fs-extra-1.1, rust-xattr-0.2)[synopsis]: Likewise.
* gnu/packages/databases.scm (perl-mysql-config)[description]: Likewise.
* gnu/packages/disk.scm (hddtemp)[description]: Likewise.
* gnu/packages/django.scm (python-djangorestframework)[description]:
Likewise.
* gnu/packages/documentation.scm (doc++)[description]: Likewise.
* gnu/packages/emacs-xyz.scm (emacs-kakoune, emacs-pyim-basedict, eless)
(emacs-scpaste)[description]: Likewise.
* gnu/packages/file-systems.scm (dbxfs)[description]: Likewise.
* gnu/packages/finance.scm (python-stdnum)[description]: Likewise.
* gnu/packages/fontutils.scm (woff2)[description]: Likewise.
* gnu/packages/games.scm (openttd-opengfx)[description]: Likewise.
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-topicons-redux)
[description]: Likewise.
* gnu/packages/gnome.scm (libgrss)[description]: Likewise.
* gnu/packages/golang.scm (go-github-com-mitchellh-reflectwalk)
[description]: Likewise.
(go-github-com-go-git-go-billy)[synopsis, description]: Likewise.
* gnu/packages/haskell-check.scm (ghc-inspection-testing)[description]:
Likewise.
* gnu/packages/haskell-web.scm (ghc-yesod-form)[description]: Likewise.
* gnu/packages/haskell-xyz.scm (ghc-hex)[description]: Likewise.
* gnu/packages/hyperledger.scm (hyperledger-iroha-ed25519)[description]:
Likewise.
* gnu/packages/java.scm (java-mail)[synopsis]: Likewise.
(java-native-access-platform)[description]: Likewise.
* gnu/packages/kde-frameworks.scm (kactivities-stats)[description]:
Likewise.
* gnu/packages/kde-utils.scm (krusader)[description]: Likewise.
* gnu/packages/language.scm (praat)[description]: Likewise.
* gnu/packages/linux.scm (light)[description]: Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-hu.dwim.defclass-star)[description]:
Likewise.
* gnu/packages/mail.scm (dovecot-trees, sieve-connect)[description]:
Likewise.
* gnu/packages/ocaml.scm (ocaml-opam-file-format, ocaml-cppo)
(ocaml4.07-ppx-variants-conv)[description]: Likewise.
* gnu/packages/perl.scm (perl-convert-binhex)[description]: Likewise.
* gnu/packages/python-crypto.scm (python-ecdsa)[description]: Likewise.
* gnu/packages/python-web.scm (python-html5lib)[synopsis, description]:
Likewise.
(python-venusian)[synopsis]: Likewise.
* gnu/packages/python-xyz.scm (python-readlike, python-gssapi)
(python-flufl-i18n)[description]: Likewise.
(python-pox, python-watchdog, python-xattr)[synopsis, description]:
Likewise.
* gnu/packages/ruby.scm (ruby-sorcerer)[description]: Likewise.
* gnu/packages/rust-apps.scm (watchexec)[description]: Likewise.
* gnu/packages/rust.scm (mrustc)[synopsis]: Likewise.
* gnu/packages/shells.scm (s-shell)[description]: Likewise.
* gnu/packages/ssh.scm (sshpass)[description]: Likewise.
* gnu/packages/terminals.scm (beep)[description]: Likewise.
* gnu/packages/web.scm (perl-lwp-useragent-cached)[description]:
Likewise.
* gnu/packages/wv.scm (wv)[description]: Likewise.
 2020-09-23 04:37:01 +02:00
Ricardo Wurmus 3159fcf145
gnu: r-wgcna: Move to (gnu packages bioconductor). 
This is a follow-up to commit 6e0ab26f31.

* gnu/packages/cran.scm (r-wgcna): Move from here...
* gnu/packages/bioconductor.scm (r-wgcna): ...to here.
 2020-09-14 21:40:15 +02:00
zimoun 3292f6eda0
gnu: r-fithic: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-fithic): Move from here...
* gnu/packages/bioconductor.scm (r-fithic): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:40:15 +02:00
zimoun 7df42d3774
gnu: r-hitc: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-hitc): Move from here...
* gnu/packages/bioconductor.scm (r-hitc): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:40:15 +02:00
zimoun 63b75c01c2
gnu: r-hdf5array: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-hdf5array): Move from here...
* gnu/packages/bioconductor.scm (r-hdf5array): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:40:10 +02:00
zimoun c61268c1b7
gnu: r-rhdf5lib: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Move from here...
* gnu/packages/bioconductor.scm (r-rhdf5lib): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:33 +02:00
zimoun 8863c14cd8
gnu: r-beachmat: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-beachmat): Move from here...
* gnu/packages/bioconductor.scm (r-beachmat): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:30 +02:00
zimoun 916a3e59ab
gnu: r-singlecellexperiment: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Move from here...
* gnu/packages/bioconductor.scm (r-singlecellexperiment): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:27 +02:00
zimoun 6b1946b334
gnu: r-scater: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-scater): Move from here...
* gnu/packages/bioconductor.scm (r-scater): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:24 +02:00
zimoun 1193b77e60
gnu: r-scran: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-scran): Move from here...
* gnu/packages/bioconductor.scm (r-scran): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:22 +02:00
zimoun 8c7c6db408
gnu: r-delayedmatrixstats: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Move from here...
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:19 +02:00
zimoun b3a998374c
gnu: r-rgraphviz: Move to (gnu packages bioconductor). 
* gnu/packages/graph.scm (r-rgraphviz): Move from here...
* gnu/packages/bioconductor.scm (r-rgraphviz): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:16 +02:00
zimoun 6e0ab26f31
gnu: r-preprocesscore: Move to (gnu packages bioconductor). 
* gnu/packages/statistics.scm (r-preprocesscore): Move from here...
* gnu/packages/bioconductor.scm (r-preprocesscore): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:12 +02:00
zimoun f4d920b9f7
gnu: r-fourcseq: Move to (gnu packages bioconductor). 
* gnu/packages/cran.scm (r-fourcseq): Move from here...
* gnu/packages/bioconductor.scm (r-fourcseq): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:00 +02:00
Ricardo Wurmus e1ce10e385
gnu: r-activedriverwgs: Update to 1.1.0. 
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.1.0.
[propagated-inputs]: Remove r-plyr.
[native-inputs]: Add r-knitr.
 2020-09-14 19:07:44 +02:00
zimoun b17ace24ca
gnu: r-codedepends: Comment why it is in bioconductor.scm. 
* gnu/packages/bioconductor.scm (r-codedepends): Add comment.
 2020-09-11 21:46:51 +02:00
Peter Lo 7e88ee9f02
gnu: Add r-fhtest. 
* gnu/packages/bioconductor.scm (r-fhtest): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:33:02 +02:00
Peter Lo 655c4bb25c
gnu: Add r-interval. 
* gnu/packages/bioconductor.scm (r-interval): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:01:30 +02:00
Peter Lo 488001eb3f
gnu: Add r-icens. 
* gnu/packages/bioconductor.scm (r-icens): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 19:13:58 +02:00
Ricardo Wurmus 40f378e18a
gnu: r-cicero: Update to 1.6.2. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.2.
 2020-09-04 22:01:40 +02:00
Ricardo Wurmus 6bc6a71119
gnu: r-mixomics: Update to 6.12.2. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.12.2.
 2020-09-04 22:01:40 +02:00
Ricardo Wurmus 60cc838403
gnu: r-atacseqqc: Update to 1.12.4. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.12.4.
 2020-09-04 22:01:40 +02:00
Ricardo Wurmus e1636671ec
gnu: r-gkmsvm: Update to 0.81.0. 
* gnu/packages/bioconductor.scm (r-gkmsvm): Update to 0.81.0.
 2020-09-04 22:01:40 +02:00
Ricardo Wurmus 0d2369be8b
gnu: r-chippeakanno: Update to 3.22.3. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.22.3.
 2020-09-04 22:01:40 +02:00
Ricardo Wurmus b828c3ea90
gnu: r-biocset: Update to 1.2.2. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.2.2.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus a27a402eba
gnu: r-experimenthub: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.14.2.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus 1bdc770dc6
gnu: r-variancepartition: Update to 1.18.3. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.3.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus 1bf630660b
gnu: r-rsubread: Update to 2.2.6. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.6.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus a20538ab7e
gnu: r-rbowtie: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.28.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus 4a504b80c2
gnu: r-biocfilecache: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.12.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus 82cb9a99f8
gnu: r-rbowtie2: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.10.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus a8840a04d7
gnu: r-motifstack: Update to 1.32.1. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.32.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus 69f3b27822
gnu: r-clusterprofiler: Update to 3.16.1. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.16.1.
[propagated-inputs]: Add r-rlang.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus fc1c3c6f9f
gnu: r-gosemsim: Update to 2.14.1. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.14.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus 0827e0be36
gnu: r-oligo: Update to 1.52.1. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.52.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus 1c43c6fa6b
gnu: r-oligoclasses: Update to 1.50.4. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.50.4.
 2020-08-20 21:25:29 +02:00
Ricardo Wurmus 8fe3ef5d5a
gnu: r-abseqr: Add pandoc-citeproc. 
* gnu/packages/bioconductor.scm (r-abseqr)[inputs]: Add pandoc-citeproc.
 2020-08-16 15:57:26 +02:00
Ricardo Wurmus 6fa5e4aaae
gnu: r-abseqr: Use pandoc instead of ghc-pandoc. 
* gnu/packages/bioconductor.scm (r-abseqr)[inputs]: Replace ghc-pandoc with
pandoc.
 2020-08-16 15:57:26 +02:00
Ricardo Wurmus 0a41d9be2e
gnu: r-nmf: Update to 0.23.0. 
* gnu/packages/bioconductor.scm (r-nmf): Update to 0.23.0.
[native-inputs]: Add r-knitr.
 2020-08-12 13:57:10 +02:00
Ricardo Wurmus 0b8c7e4bb5
gnu: Add r-m3c. 
* gnu/packages/bioconductor.scm (r-m3c): New variable.
 2020-08-11 11:27:06 +02:00
Tobias Geerinckx-Rice 702a101257
gnu: Use HTTPS for github.com (and subdomains) home pages. 
* gnu/packages/bioconductor.scm (r-qvalue)[home-page]: Use HTTPS and
follow permanent redirection.
* gnu/packages/check.scm (python-codecov, python-nosexcover)
[home-page]: Likewise.
* gnu/packages/cran.scm (r-ffbase, r-ggrepel, r-valr)
[home-page]: Likewise.
* gnu/packages/crates-io.scm (rust-block-0.1, rust-dispatch-0.1)
(rust-objc-0.2, rust-objc-exception-0.1)
(rust-objc-foundation-0.1, rust-objc-id-0.1, rust-objc-test-utils-0.0)
(rust-onig-5.0, rust-onig-sys-69.2, rust-vergen-3.1)
[home-page]: Likewise.
* gnu/packages/finance.scm (ledger-agent, keepkey-agent)
[home-page]: Likewise.
* gnu/packages/haskell-check.scm (ghc-tasty-expected-failure)
[home-page]: Likewise.
* gnu/packages/haskell-web.scm (ghc-bsb-http-chunked, ghc-warp)
(ghc-warp-tls)[home-page]: Likewise.
* gnu/packages/haskell-xyz.scm (ghc-configurator, ghc-hasktags)
(ghc-linear, ghc-newtype-generics, ghc-retry, ghc-xdg-basedir)
(ghc-pretty-show)[home-page]: Likewise.
* gnu/packages/java.scm (java-javax-inject)[home-page]: Likewise.
* gnu/packages/libffi.scm (ruby-ffi)[home-page]: Likewise.
* gnu/packages/linux.scm (procenv)[home-page]: Likewise.
* gnu/packages/python-web.scm (python-aiodns, python-flask-htpasswd)
(python-pycares)[home-page]: Likewise.
* gnu/packages/python-xyz.scm (python-progressbar33, python-whatever)
(python-funcy)[home-page]: Likewise.
* gnu/packages/ruby.scm (ruby-rubyzip, ruby-spinach, ruby-gherkin-ruby)
(ruby-code-statistics, ruby-colorize, ruby-wwtd)[home-page]: Likewise.
 2020-07-16 20:12:06 +02:00
Ricardo Wurmus a9a912805a
gnu: r-activepathways: Update to 1.0.2. 
* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.0.2.
[propagated-inputs]: Remove r-metap.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus 1a7d1c54d4
gnu: r-rsubread: Update to 2.2.4. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.4.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus 2d9c897dd0
gnu: r-variancepartition: Update to 1.18.2. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.2.
 2020-07-16 10:08:03 +02:00
Ludovic Courtès b0e7b6992f
gnu: Remove ".git" from "https://github/…/….git". 
Until now, 'lookup-origin' and thus 'lookup-origin-revision' in (guix
swh) would sometimes return #f for these because the ".git" URLs are
redirects to the non-".git" URLs.  Consequently, 'guix lint -c archival'
would keep saying "scheduled Software Heritage archival"; likewise, the
fallback download code would fail.

* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/aidc.scm,
gnu/packages/algebra.scm,
gnu/packages/android.scm,
gnu/packages/animation.scm,
gnu/packages/arcan.scm,
gnu/packages/assembly.scm,
gnu/packages/audio.scm,
gnu/packages/authentication.scm,
gnu/packages/avr.scm,
gnu/packages/axoloti.scm,
gnu/packages/backup.scm,
gnu/packages/bash.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioconductor.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/boost.scm,
gnu/packages/build-tools.scm,
gnu/packages/c.scm,
gnu/packages/calendar.scm,
gnu/packages/cdrom.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/chez.scm,
gnu/packages/clojure.scm,
gnu/packages/code.scm,
gnu/packages/compression.scm,
gnu/packages/compton.scm,
gnu/packages/coq.scm,
gnu/packages/cpp.scm,
gnu/packages/cran.scm,
gnu/packages/crypto.scm,
gnu/packages/curl.scm,
gnu/packages/databases.scm,
gnu/packages/datastructures.scm,
gnu/packages/debug.scm,
gnu/packages/disk.scm,
gnu/packages/distributed.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/dns.scm,
gnu/packages/docker.scm,
gnu/packages/education.scm,
gnu/packages/efi.scm,
gnu/packages/elixir.scm,
gnu/packages/emacs-xyz.scm,
gnu/packages/embedded.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/erlang.scm,
gnu/packages/fabric-management.scm,
gnu/packages/file-systems.scm,
gnu/packages/finance.scm,
gnu/packages/firmware.scm,
gnu/packages/flashing-tools.scm,
gnu/packages/fonts.scm,
gnu/packages/fontutils.scm,
gnu/packages/fpga.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/genealogy.scm,
gnu/packages/genimage.scm,
gnu/packages/geo.scm,
gnu/packages/gimp.scm,
gnu/packages/gl.scm,
gnu/packages/gnome-xyz.scm,
gnu/packages/gnome.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/golang.scm,
gnu/packages/gpodder.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/groff.scm,
gnu/packages/groovy.scm,
gnu/packages/gtk.scm,
gnu/packages/guile-xyz.scm,
gnu/packages/guile.scm,
gnu/packages/hardware.scm,
gnu/packages/haskell-apps.scm,
gnu/packages/haskell-xyz.scm,
gnu/packages/hexedit.scm,
gnu/packages/i2p.scm,
gnu/packages/ibus.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/ipfs.scm,
gnu/packages/java-graphics.scm,
gnu/packages/java-maths.scm,
gnu/packages/java.scm,
gnu/packages/javascript.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/jupyter.scm,
gnu/packages/kodi.scm,
gnu/packages/language.scm,
gnu/packages/lego.scm,
gnu/packages/less.scm,
gnu/packages/libusb.scm,
gnu/packages/linux.scm,
gnu/packages/lirc.scm,
gnu/packages/lisp-xyz.scm,
gnu/packages/llvm.scm,
gnu/packages/logging.scm,
gnu/packages/lolcode.scm,
gnu/packages/lua.scm,
gnu/packages/lxde.scm,
gnu/packages/lxqt.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/markup.scm,
gnu/packages/maths.scm,
gnu/packages/maven.scm,
gnu/packages/mes.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/node-xyz.scm,
gnu/packages/ocaml.scm,
gnu/packages/ocr.scm,
gnu/packages/onc-rpc.scm,
gnu/packages/opencl.scm,
gnu/packages/opencog.scm,
gnu/packages/pantheon.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/perl6.scm,
gnu/packages/phabricator.scm,
gnu/packages/popt.scm,
gnu/packages/printers.scm,
gnu/packages/prolog.scm,
gnu/packages/protobuf.scm,
gnu/packages/pulseaudio.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/python-xyz.scm,
gnu/packages/qt.scm,
gnu/packages/radio.scm,
gnu/packages/rails.scm,
gnu/packages/rdf.scm,
gnu/packages/rednotebook.scm,
gnu/packages/rpc.scm,
gnu/packages/rsync.scm,
gnu/packages/ruby.scm,
gnu/packages/rust.scm,
gnu/packages/scheme.scm,
gnu/packages/screen.scm,
gnu/packages/security-token.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/shellutils.scm,
gnu/packages/simh.scm,
gnu/packages/sml.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/stenography.scm,
gnu/packages/sync.scm,
gnu/packages/syncthing.scm,
gnu/packages/synergy.scm,
gnu/packages/telephony.scm,
gnu/packages/terminals.scm,
gnu/packages/tex.scm,
gnu/packages/texinfo.scm,
gnu/packages/text-editors.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tmux.scm,
gnu/packages/tor.scm,
gnu/packages/toys.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/vim.scm,
gnu/packages/virtualization.scm,
gnu/packages/vlang.scm,
gnu/packages/vnc.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wireservice.scm,
gnu/packages/wm.scm,
gnu/packages/wxwidgets.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xml.scm,
gnu/packages/xorg.scm,
tests/lint.scm: Remove trailing ".git" from 'git-reference' URL.
 2020-07-12 23:08:15 +02:00
Ricardo Wurmus 54e04fed9c
gnu: r-depecher: Update to 1.4.1. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.4.1.
 2020-07-04 11:52:33 +02:00
Ricardo Wurmus c535717b6a
gnu: r-rsubread: Update to 2.2.3. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.3.
 2020-07-04 11:52:33 +02:00
Ricardo Wurmus c89afe7516
gnu: Add r-rgreat. 
* gnu/packages/bioconductor.scm (r-rgreat): New variable.
 2020-06-22 14:39:03 +02:00
Ricardo Wurmus f7d5721bc2
gnu: r-gdsfmt: Update to 1.24.1. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.24.1.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus 1893092d58
gnu: r-cicero: Update to 1.6.1. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.1.
[propagated-inputs]: Add r-stringi.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus ef58875705
gnu: r-cytoml: Update to 2.0.5. 
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.0.5.
[propagated-inputs]: Add r-xml2.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus 015ff0bf18
gnu: r-wiggleplotr: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.12.1.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus 8c06ce3c22
gnu: r-regioner: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.20.1.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus 214ee82742
gnu: r-flowworkspace: Update to 4.0.6. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.0.6.
 2020-06-14 09:13:22 +02:00
Ricardo Wurmus 9bc516bada
gnu: Add r-pcatools. 
* gnu/packages/bioconductor.scm (r-pcatools): New variable.
 2020-06-13 22:35:29 +02:00
Ricardo Wurmus 6b9e3b92c4
gnu: r-biodist: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.60.0.
 2020-06-13 01:20:02 +02:00
Ricardo Wurmus 6a88291d1a
gnu: r-biocworkflowtools: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.14.0.
 2020-06-13 01:20:02 +02:00
Ricardo Wurmus 723fa00d11
gnu: r-biocset: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.2.1.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:02 +02:00
Ricardo Wurmus 1759a13d6e
gnu: r-biocpkgtools: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.6.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 132abe5fcc
gnu: r-biocor: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 1c51821593
gnu: r-bioconcotk: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.8.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 4091eae2bc
gnu: r-multiassayexperiment: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.14.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus b56a3462ad
gnu: r-experimenthub: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.14.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 543c63f2ae
gnu: r-biocgraph: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.50.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 8b71b14158
gnu: r-bioccasestudies: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-bioccasestudies): Update to 1.50.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus a74a427bd8
gnu: r-ebarrays: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.52.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus affb4ab351
gnu: r-reactomepa: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.32.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 29b1702799
gnu: r-graphite: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.34.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus e09ca033f4
gnu: r-biobroom: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus c8cbde9ff6
gnu: r-bioassayr: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.26.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 06908a73fc
gnu: r-chemminer: Update to 3.40.0. 
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.40.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus d0badcc180
gnu: r-bigpint: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.4.0.
[propagated-inputs]: Add r-delayedarray and r-summarizedexperiment.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus eef9c99cd8
gnu: r-bigmemoryextras: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-bigmemoryextras): Update to 1.36.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus f31edb0191
gnu: r-biggr: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.24.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus 3116998610
gnu: r-hyperdraw: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.40.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus 0ff724616b
gnu: r-hypergraph: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.60.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus d65bdbb2cb
gnu: r-rsbml: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.46.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus a54fd40994
gnu: r-bifet: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.8.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus 7642517336
gnu: r-bicare: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.46.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus 2415576ecb
gnu: r-bhc: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.40.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus de91f15a74
gnu: r-bgx: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.54.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus 296992be08
gnu: r-bgmix: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.48.0.
 2020-06-13 01:20:00 +02:00