28e74f49fe
Revert "gnu: hwdata: Update to 0.378."
...
This reverts commit 7ed5a336bd
2024-05-06 14:29:25 +02:00
f89d06d13b
gnu: Add emacs-devicetree-ts-mode.
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* gnu/packages/emacs-xyz.scm (emacs-devicetree-ts-mode): New variable.
Update copyright.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
Change-Id: I6ab5a52d1aa045794f72edd3c810255f2e432038
2024-05-06 14:14:31 +02:00
03de08d3b6
gnu: Add tree-sitter-devicetree.
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* gnu/packages/tree-sitter.scm (tree-sitter-devicetree): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
Change-Id: Ia73316fa422be84a79e16f2fa40371853ae83570
2024-05-06 14:14:03 +02:00
a2d4a64d04
gnu: emacs-xyz: Add emacs-xref-union.
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* gnu/packages/emacs-xyz.scm (emacs-xref-union): New variable.
Change-Id: Idea12ce6869f5244a873e933cf1135db284d2391
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-05-06 14:12:24 +02:00
fa6716e080
gnu: waybar: Update to 0.10.2.
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* gnu/packages/wm.scm (waybar): Update to 0.10.2.
0.10.1 changelog: https://github.com/Alexays/Waybar/releases/tag/0.10.1 .
0.10.2 changelog: https://github.com/Alexays/Waybar/releases/tag/0.10.2 .
The meson build has been stable for these two releases, no new/removed
dependencies.
Change-Id: I2359a2111a35041860172232722e6d91a1ff35e7
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-05-06 13:48:38 +02:00
1cb70ce152
gnu: wxmaxima: Update to 24.02.2.
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* gnu/packages/maths.scm (wxmaxima): Update to 24.02.2.
Change-Id: I33cd6a3230a7d1672aadf942ad0b089dfa8603b0
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-05-06 13:47:25 +02:00
29db98ec67
gnu: tenacity: Update to 1.3.1.
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* gnu/packages/audio.scm (tenacity): Update to 1.3.1.
Change-Id: Id06fb3e9283524341f30d961854d8e6f6df1543e
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-05-06 13:46:59 +02:00
2c299b338a
gnu: retroarch: Fix OpenGL core and Vulkan drivers.
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* gnu/packages/emulators.scm (retroarch)[arguments]: Ignore check result for
HAVE_GLSLANG_HLSL in the configure phase.
Change-Id: I3ba110b834acca25ada0e680a6bcb879b4db96f4
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-05-06 13:46:26 +02:00
81743c54a3
gnu: qutebrowser: Add python-tldextract to inputs.
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* gnu/packages/web-browsers.scm (qutebrowser)[inputs]: Add python-tldextract.
Change-Id: I2c1cf1c71cf0e6ba01711d36fd38d3b09e242caa
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-05-06 13:45:30 +02:00
d6a39f3e89
gnu: highlight: Update to 4.11.
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* gnu/packages/pretty-print.scm (highlight): Update to 4.11.
[source]: Switch to git-fetch.
[home-page]: Switch to html page.
[arguments]<#:make-flags>: Use #$output replace %output.
<#:phases>: Use ‘this-package-input‘ to find lua and perl.
Reviewed-by: Dale Mellor <guix-devel-0brg6a@rdmp.org>
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
Change-Id: I0c402fcea5708c4882b52309b3e072301f0a5614
2024-05-06 13:44:24 +02:00
7ed5a336bd
gnu: hwdata: Update to 0.378.
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* gnu/packages/pciutils.scm (hwdata): Update to 0.378.
Reviewed-by: Dale Mellor <guix-devel-0brg6a@rdmp.org>
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
Change-Id: I7200477ce06280913802e94cd5ef6d9639b8de9f
2024-05-06 13:42:50 +02:00
a8f0e8a31d
gnu: pcsc-lite: Update to 2.1.0.
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* gnu/packages/security-token.scm (pcsc-lite): Update to 2.1.0.
Reviewed-by: Christina O'Donnell <cdo@mutix.org>
Change-Id: I133fd056afb84259cf5cb1f3e9c664ac336e50b9
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-05-06 13:41:57 +02:00
3bc4f32058
gnu: musescore: Propagate alsa-plugins pulseaudio to runtime.
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In order for libasound_module_conf_pulse.so to be present at runtime of
MuseScore the alsa-plugins output "pulseaudio" must be present.
Playback of scores was not working, at least on a foreign distro like
Debian. When running on Debian, MuseScore complained that
libasound_module_conf_pulse.so was missing at startup. This patch was
tested on Debian 12 and fixed the issue.
* gnu/packages/music.scm (musescore): Propagate alsa-plugins pulseaudio to runtime
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
Change-Id: I4e2db8e45fdf33987817cef41bcd336526b16d90
2024-05-06 13:41:11 +02:00
20cb45a502
gnu: leocad: Update to 23.03
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* gnu/packages/lego.scm (leocad): Update to 23.03
Change-Id: I0fc566e0325aa992440cf4f895b5780df7e49632
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2024-05-06 13:26:16 +02:00
e4090a558f
gnu: msmtp: Update to 1.8.26.
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* gnu/packages/mail.scm (msmtp): Update to 1.8.26.
Change-Id: I85eea2d64944a3e1b7b4ed3022772190ee5787c2
2024-05-06 13:24:42 +02:00
bdba291a72
gnu: emacs-telega: Update to 0.8.255.
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* gnu/packages/emacs-xyz.scm (emacs-telega): Update to 0.8.255.
* gnu/packages/patches/emacs-telega-path-placeholder.patch: Update patch.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I8cec5a5170318f0ae99116a98afcefe31203b585
2024-05-06 13:22:29 +02:00
f736a784e1
gnu: trust4: Update to 1.1.0.
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* gnu/packages/bioinformatics.scm (trust4): Update to 1.1.0.
Change-Id: I4780038a5db110514e27f07a576166def4063da7
2024-05-06 12:36:53 +02:00
709e87caff
gnu: Add trust4.
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gnu/packages/bioinformatics.scm (trust4): New variable.
Change-Id: I6a0fd339a0f761a473f50c7da74c26cfac7b1caf
2024-05-06 11:47:05 +02:00
57769fb0b3
gnu: Add r-seraster.
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* gnu/packages/bioinformatics.scm (r-seraster): New variable.
Change-Id: I9f9fd24a9aa563f7c74154e613b85dee46bdcf79
2024-05-06 11:38:17 +02:00
fc51a747fa
gnu: Add r-rearrr.
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* gnu/packages/cran.scm (r-rearrr): New variable.
Change-Id: I41e06b24e565a4070f570b7fd5c656f185aacfa9
2024-05-06 11:38:08 +02:00
64fcc49dc5
gnu: Add r-metadeconfoundr.
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* gnu/packages/bioinformatics.scm (r-metadeconfoundr): New variable.
Change-Id: I733fb464d2a3c7fd1335826be9f23e2610e6fd60
2024-05-06 11:26:54 +02:00
2c52bbd16d
gnu: Add r-detectseparation.
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* gnu/packages/cran.scm (r-detectseparation): New variable.
Change-Id: I6c795719c22a6ff929785e799f749ce053e83fbe
2024-05-06 11:24:57 +02:00
458cd1e1d8
gnu: Add r-roi-plugin-lpsolve.
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* gnu/packages/cran.scm (r-roi-plugin-lpsolve): New variable.
Change-Id: Ia3f47ba0b414ecd9273c101977ec8d14916fa656
2024-05-06 11:24:56 +02:00
112ecacba3
gnu: Add r-roi.
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* gnu/packages/cran.scm (r-roi): New variable.
Change-Id: I58cbb4be238a5cc9f861ee9dafea03a133f7c0f1
2024-05-06 11:24:56 +02:00
2b7e9239c0
gnu: Add r-lpsolveapi.
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* gnu/packages/cran.scm (r-lpsolveapi): New variable.
Change-Id: I6a93603a5814df0eb43a214b5c2a0f4865901bcd
2024-05-06 11:24:56 +02:00
00aa6b5a3c
gnu: Add python-pyrodigal.
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* gnu/packages/bioinformatics.scm (python-pyrodigal): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: Iaa0bdb4b918d93f990d5b904f1df3a3f910726b0
2024-05-06 10:37:41 +02:00
a5fef66b34
gnu: Add python-archspec.
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* gnu/packages/python-xyz.scm (python-archspec): New variable.
Change-Id: Icb15a681d7f339ab25cb0a91feeaacc6a3e8cd6a
2024-05-06 10:37:41 +02:00
da41a8f5e8
gnu: linux-libre 4.19: Update to 4.19.313.
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* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.313.
(linux-libre-4.19-pristine-source): Update hash.
Change-Id: I22e9d175b537164efcde4cec5188c26bae8d2fca
Signed-off-by: Leo Famulari <leo@famulari.name>
2024-05-05 23:15:59 -04:00
44d28d102b
gnu: linux-libre 5.4: Update to 5.4.275.
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* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.275.
(linux-libre-5.4-pristine-source): Update hash.
Change-Id: Ifcd296510ae1c7e81a4a5fa3c8eb6e304e2d662d
Signed-off-by: Leo Famulari <leo@famulari.name>
2024-05-05 23:15:59 -04:00
5d51f8897c
gnu: linux-libre 5.10: Update to 5.10.216.
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* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.216.
(linux-libre-5.10-pristine-source): Update hashes.
Change-Id: Ia14fa905e109c81cc8397d1151cc327d6e1ea25a
Signed-off-by: Leo Famulari <leo@famulari.name>
2024-05-05 23:15:58 -04:00
5ea5d677fe
gnu: linux-libre 5.15: Update to 5.15.158.
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* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.158.
(linux-libre-5.15-pristine-source): Update hash.
Change-Id: Ib2b12fac8301ced17e6e068a1e68768e200d5a24
Signed-off-by: Leo Famulari <leo@famulari.name>
2024-05-05 23:15:58 -04:00
ef0cf6ae85
gnu: linux-libre 6.1: Update to 6.1.90.
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* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.90.
(linux-libre-6.1-pristine-source): Update hash.
Change-Id: Ic1ef7176af2055db78b58458bb9327bce5789d48
2024-05-05 23:15:58 -04:00
98e368f660
gnu: linux-libre 6.6: Update to 6.6.30.
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* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.30.
(linux-libre-6.6-pristine-source): Update hash.
Change-Id: Ic261985e2c199a80068e2898684d522939b98a89
2024-05-05 23:15:58 -04:00
c2fdac2262
gnu: linux-libre-6.8-gnu-revision: Update to 6.8.9.
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* gnu/packages/linux.scm (linux-libre-6.8-version): Update to 6.8.9.
(linux-libre-6.8-pristine-source): Update hash.
Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: I4f8031b1db5e19e98e5f61377a45912f91d403f7
2024-05-05 23:15:57 -04:00
dae5eecd47
gnu: Add mupen64plus-video-gliden64.
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* gnu/packages/emulators.scm (mupen64plus-video-gliden64): New variable.
Change-Id: I09782d0c793062c3fa448b5376a97a5f3356ea5c
2024-05-05 22:58:13 -04:00
79a51c910c
gnu: mupen64plus-ui-console: Modernize.
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* gnu/packages/emulators.scm (mupen64plus-ui-console)
[propagated-inputs]: Remove legacy mupen64plus-video-glide64 plugin.
[arguments]: Use gexps.
Change-Id: I33ce0ef1e7ea87b382f74aae07098bcf0e5f30e0
2024-05-05 22:58:13 -04:00
3a1737aaa2
gnu: mupen64plus-video-rice: Adjust synopsis.
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* gnu/packages/emulators.scm (mupen64plus-video-rice): Adjust synopsis.
Change-Id: I3708c46593a096f632d9268200c312a434525331
2024-05-05 22:58:13 -04:00
726b076658
gnu: mupen64plus-video-glide64mk2: Fix synopsis.
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* gnu/packages/emulators.scm (mupen64plus-video-glide64mk2): Fix synopsis.
Change-Id: I6f41e9a4b70faa0e2342a4ffc2803873a8dc8f08
2024-05-05 22:58:13 -04:00
8c25cab988
gnu: mupen64plus-video-glide64: Fix synopsis.
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* gnu/packages/emulators.scm (mupen64plus-video-glide64): Fix synopsis.
Change-Id: I0b2b4630dcf3c5dc5ee385e82c71f92694cf2abe
2024-05-05 22:58:12 -04:00
e21c9f337e
gnu: mupen64plus-video-arachnoid: Fix synopsis.
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* gnu/packages/emulators.scm (mupen64plus-video-arachnoid): Fix synopsis.
Change-Id: Ic560e6780965526723907aff9d2af6c48f580508
2024-05-05 22:58:12 -04:00
8fbc8e7a65
gnu: mupen64plus-rsp-z64: Fix synopsis.
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* gnu/packages/emulators.scm (mupen64plus-rsp-z64): Fix synopsis.
Change-Id: I97d5b8e70949f2a5198ce45b0a1fe24a089078ba
2024-05-05 22:58:12 -04:00
376fe82015
gnu: mupen64plus-rsp-hle: Fix synopsis.
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* gnu/packages/emulators.scm (mupen64plus-rsp-hle): Fix synopsis.
Change-Id: I7235da472ecd1856fdc33ed08d92f9f05b29ba3a
2024-05-05 22:58:12 -04:00
721e44d419
gnu: mupen64plus-audio-sdl: Fix synopsis.
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* gnu/packages/emulators.scm (mupen64plus-audio-sdl): Fix synopsis.
Change-Id: I08b2778cf625699d72d5fbab2b23d86ff06a1be0
2024-05-05 22:58:12 -04:00
e33bf0bbe6
gnu: Add python-pyahocorasick.
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* gnu/packages/bioinformatics.scm (python-pyahocorasick): New variable.
Change-Id: I468bed450351b49cf81344a328841cd77f67cb4e
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2024-05-06 00:07:40 +02:00
a710ebec1d
gnu: Add r-memes.
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* gnu/packages/bioconductor.scm (r-memes): New variable.
Change-Id: Ibdf5173d35ef81d27da6831148e66be83f856deb
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2024-05-06 00:06:19 +02:00
a4ad0a46ef
gnu: python-graphtools: Fix tests.
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* gnu/packages/graph.scm (python-graphtools)[arguments]: Add 'patch-tests
phase.
Change-Id: I5ffb4321ddd7e33e812bcb1cf67cee069b07b5f8
2024-05-05 22:38:18 +02:00
1b44a23503
gnu: python-gpy: Update to 1.13.1.
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* gnu/packages/python-science.scm (python-gpy): Update to 1.13.1.
[source]: Remove snippet.
[build-system]: Use pyproject-build-system.
[arguments]: Remove phase 'remove-plotting-tests; add phase 'compatibility.
[native-inputs]: Remove python-nose and python-climin; add python-pytest,
python-matplotlib, and python-pods.
Change-Id: I1ed95e3ad2e8444979fd2cf272d7f3104b1bf2ec
2024-05-05 22:38:18 +02:00
a4039b6994
gnu: python-pygsp: Add missing input.
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* gnu/packages/graph.scm (python-pygsp)[native-inputs]: Add python-pytest.
Change-Id: I94cd4e160dcbecfbb491c0d101bcbeb761189876
2024-05-05 22:38:18 +02:00
9d615b915b
gnu: python-paramz: Update to 0.9.6.
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* gnu/packages/python-science.scm (python-paramz): Update to 0.9.6.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-nose.
Change-Id: I62a2f7ecf600f48da74f4d233e108360a583d5ca
2024-05-05 22:38:18 +02:00
041ea43a86
gnu: python-pingouin: Update to 0.5.4.
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* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.4.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase; add 'sklearn-compatibility phase;
skip one test.
Change-Id: I8d13f15558eadee0547f04bc4bb89a0fd0e0767b
2024-05-05 22:38:18 +02:00
99bf1b1002
gnu: python-liana-py: Update to 1.1.0.
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* gnu/packages/bioinformatics.scm (python-liana-py): Update to 1.1.0.
[arguments]: Adjust tests; add phase 'relax-requirements.
[propagated-inputs]: Remove python-mofax; add python-numpy.
[native-inputs]: Remove python-numpy; add python-poetry-core.
Change-Id: I279be08ac3ac73d9a724f59652f2f0d333607696
2024-05-05 22:38:18 +02:00
4d65083bf8
gnu: python-plotnine: Fix version string.
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* gnu/packages/python-science.scm (python-plotnine)[native-inputs]: Add
python-setuptools-scm.
Change-Id: I0fc2f3ad7edcdaaa5e3bf9774bc6840c8fbeb727
2024-05-05 22:38:18 +02:00
02ca781c03
gnu: python-plotnine: Disable test because of harmless warning.
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* gnu/packages/python-science.scm (python-plotnine)[arguments]: Disable
test_save_method which prints an unexpected warning..
Change-Id: I28a20b85ee549311bed534efbf801db930419ca9
2024-05-05 22:38:18 +02:00
f678884b4a
gnu: python-mapie: Disable strict tests.
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* gnu/packages/statistics.scm (python-mapie)[arguments]: Disable two tests.
Change-Id: I2c72f6f2d0136db5f97ba709a468a3aebd447d5d
2024-05-05 22:38:18 +02:00
c226d12856
gnu: python-scikit-learn-extra: Disable a validation test.
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* gnu/packages/machine-learning.scm (python-scikit-learn-extra)[arguments]:
Disable one test.
Change-Id: I1309cb6a82dee1a714ddec59aa90692ccfcd885b
2024-05-05 22:38:18 +02:00
1ea0e3e6dd
gnu: python-cooltools: Update to 0.7.0.
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* gnu/packages/bioinformatics.scm (python-cooltools): Update to 0.7.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove.
Change-Id: I4112bf0cbc309df551087b8bb3cb1d37af7f751d
2024-05-05 22:38:18 +02:00
d14d5147b1
gnu: python-bioframe: Update to 0.6.4.
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* gnu/packages/bioinformatics.scm (python-bioframe): Update to 0.6.4.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase; add 'pre-check phase. Use
#:test-flags to disable tests that require internet access.
[native-inputs]: Add python-hatchling.
[propagated-inputs]: Add python-pyyaml.
Change-Id: Iad1c8c6ef8f52886e398e9c4d2d384c5fce075c6
2024-05-05 22:38:18 +02:00
317be75d1d
gnu: python-verde: Add missing input.
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* gnu/packages/geo.scm (python-verde)[native-inputs]: Add python-pytest.
Change-Id: I82b844627f27cfe60e42050bb37d092b3d9a43c1
2024-05-05 22:38:18 +02:00
ffffc0227a
gnu: python-statmake: Adjust tests and version checks.
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* gnu/packages/fontutils.scm (python-statmake)[arguments]: Disable broken
test; relax check for cattrs.
Change-Id: Ibd479743160d3591088d17635e26484e7de5250f
2024-05-05 22:38:18 +02:00
cb9ec4c5c5
gnu: python-decoupler-py: Update to 1.6.0.
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* gnu/packages/bioinformatics.scm (python-decoupler-py): Update to 1.6.0.
[arguments]: Do not disable test_plot_volcano test.
Change-Id: I44a31d30e8a03d2d1ffd86383c8bc6db79628def
2024-05-05 22:38:18 +02:00
0e24635033
gnu: python-omnipath: Update to 1.0.8.
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* gnu/packages/python-web.scm (python-omnipath): Update to 1.0.8.
[arguments]: Disable tests that need internet access.
[native-inputs]: Add python-pytest-socket.
Change-Id: Ib5856a1a25835d43918d9fe565d0262dded70eed
2024-05-05 22:38:17 +02:00
7c938c232c
gnu: barectf: Use python-termcolor-1.
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* gnu/packages/instrumentation.scm (barectf)[propagated-inputs]: Use
python-termcolor-1.
Change-Id: I8284db970d3cee8988318be7f1180aa933ab461a
2024-05-05 22:38:17 +02:00
1f5eef8391
gnu: Add python-termcolor-1.
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* gnu/packages/python-xyz.scm (python-termcolor-1): New variable.
Change-Id: I1aca97b6b7976cb698131c3a0be73e4798bef6d6
2024-05-05 22:38:17 +02:00
79d13482e4
gnu: python-pytest-shutil: Disable a test.
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* gnu/packages/python-check.scm (python-pytest-shutil)[build-system]: Use
pyproject-build-system.
[arguments]: Disable test_pretty_formatter.
Change-Id: I862320feab5b3c6e375bf652deced6a631dfc575
2024-05-05 22:38:17 +02:00
360f9ea421
gnu: python-cleanlab: Update to 2.6.3.
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* gnu/packages/machine-learning.scm (python-cleanlab): Update to 2.6.3.
[arguments]: Disable tests that require "datasets" package; add phase
'remove-datasets.
Change-Id: I6af99e3e749a10515328db4874974a3504658352
2024-05-05 22:38:17 +02:00
714baf2295
gnu: python-termcolor: Update to 2.4.0.
...
* gnu/packages/python-xyz.scm (python-termcolor): Update to 2.4.0.
[build-system]: Use pyproject-build-system.
[arguments]: Add 'fix-pyproject build phase.
[native-inputs]: Add python-hatch-vcs, python-hatchling, python-pytest, and
python-pytest-cov.
Change-Id: I1b824ca6f125305169c3f64f00dbacbeb77d0ed0
2024-05-05 22:38:17 +02:00
31f57ae7df
gnu: python-hicexplorer: Update to 3.7.4.
...
* gnu/packages/bioinformatics.scm (python-hicexplorer): Update to 3.7.4.
[source]: Remove obsolete snippet.
[arguments]: Remove obsolete phase 'scipy-compatibility.
[propagated-inputs]: Replace python-cleanlab-1 with python-cleanlab.
Change-Id: Iac9a24cc4551b7d7e1d41d1f07a6db6d620b119e
2024-05-05 22:38:17 +02:00
9692e2bb7c
gnu: snakemake-5: Patch version string.
...
* gnu/packages/python-xyz.scm (snakemake-5)[arguments]: Add phase
'patch-version.
Change-Id: I647625e9d26b2ee06274a0c5bb844ccb87035537
2024-05-05 22:38:17 +02:00
8d14b1cbb6
gnu: snakemake-5: Make compatible with tabulate 0.9.0.
...
* gnu/packages/python-xyz.scm (snakemake-5)[arguments]: Add phase
'tabulate-compatibility.
Change-Id: I0b0ddafe9c2da91dbe10a584eb6fa0a3d5d62e87
2024-05-05 22:38:17 +02:00
36a1e76173
gnu: snakemake: Fetch from git repository.
...
* gnu/packages/python-xyz.scm (snakemake)[source]: Fetch from git repository
to include tests.
[arguments]: Enable tests; add 'pre-check phase.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add git-minimal, python-wrapper, python-pytest,
python-pandas, and python-requests-mock.
Change-Id: I32e9d36752cc91eacb8f05138d969834dbbce817
2024-05-05 22:38:17 +02:00
6095e5b436
gnu: snakemake-7: Make compatible with tabulate 0.9.0.
...
* gnu/packages/python-xyz.scm (snakemake-7)[arguments]: Add phase
'tabulate-compatibility.
Change-Id: Ie6b2a7d65bc76e3df7c3946ba4533b301f5a3610
2024-05-05 22:38:17 +02:00
6244177e79
gnu: snakemake-6: Make compatible with tabulate 0.9.0.
...
* gnu/packages/python-xyz.scm (snakemake-6)[arguments]: Add phase
'tabulate-compatibility.
Change-Id: I0471726e2000af76871e2542ed347cd1727bf0c9
2024-05-05 22:38:17 +02:00
ee9720b2f0
gnu: python-jsonpickle: Update to 3.0.4.
...
* gnu/packages/python-web.scm (python-jsonpickle): Update to 3.0.4.
[build-system]: Use pyproject-build-system.
[arguments]: Use test-flags; add 'pre-check phase.
[propagated-inputs]: Add python-importlib-metadata.
[native-inputs]: Add python-bson, python-ecdsa, python-feedparser,
python-pymongo, python-pytest, python-pytest-benchmark, python-pytest-cov,
python-pytest-enabler, python-setuptools, python-setuptools-scm,
python-simplejson, python-sqlalchemy, python-ujson, and tzdata-for-tests.
Change-Id: I99e41ae2652ce02b090ee2b99a7b850a19b5f353
2024-05-05 22:38:17 +02:00
d5424b12af
gnu: python-imbalanced-learn: Update to 0.12.2.
...
* gnu/packages/machine-learning.scm (python-imbalanced-learn): Update to
0.12.2.
[native-inputs]: Remove python-numpydoc.
Change-Id: I8af0017f76d5ab3a2d55a96c0ace6be22d57fb66
2024-05-05 22:38:17 +02:00
2d8c81a8d7
gnu: tadbit: Add R to inputs.
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* gnu/packages/bioinformatics.scm (tadbit)[inputs]: Add r-minimal.
Change-Id: I4929dd89ddd27b4fcbd8b3a00b8ab8f3586945d2
2024-05-05 22:38:17 +02:00
93a397f8b7
gnu: tadbit: Patch for compatibility with latest scipy.
...
* gnu/packages/bioinformatics.scm (tadbit)[arguments]: Add phase
'scipy-compatibility.
Change-Id: Ib25b9cde75f0505c347c4ff470e61f06fb162839
2024-05-05 22:38:17 +02:00
453b7a267b
gnu: tadbit: Update to 1.0.1-2.2838129.
...
* gnu/packages/bioinformatics.scm (tadbit): Update to 1.0.1-2.2838129.
Change-Id: I2c220ae37cd196ca508d30aefc24938cce985527
2024-05-05 22:38:17 +02:00
332a8fa4bc
gnu: python-cooler: Update to 0.9.3.
...
* gnu/packages/bioinformatics.scm (python-cooler): Update to 0.9.3.
Change-Id: I4b89d552a424e74f76cda0c527dc7b712b8c9f31
2024-05-05 22:38:17 +02:00
57f265f1ea
gnu: python-dask: Do not reference pyarrow_hotfix.
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* gnu/packages/python-xyz.scm (python-dask)[arguments]: Add 'patch-pyproject
phase.
Change-Id: Idd173b72b1467540c295224072f3740c7f42b0a8
2024-05-05 22:38:17 +02:00
262df6c607
gnu: python-dask: Disable some tests.
...
* gnu/packages/python-xyz.scm (python-dask)[arguments]: Disable ORC tests and
those that fail due to differences in job id.
Change-Id: I272a77c8291b121b57b02750916f520b52185bbe
2024-05-05 22:38:17 +02:00
78d5fb1720
gnu: python-dask: Propagate python-dask-expr.
...
* gnu/packages/python-xyz.scm (python-dask/bootstrap): New variable.
(python-dask)[propagated-inputs]: Add python-dask-expr.
* gnu/packages/python-science.scm (python-dask-expr)[propagated-inputs]:
Remove python-dask.
[native-inputs]: Add python-dask/bootstrap.
Change-Id: I1196641425421c7dde94c6fea8d573e78db9c402
2024-05-05 22:38:17 +02:00
a237ba5378
gnu: python-umap-learn: Disable failing test.
...
* gnu/packages/machine-learning.scm (python-umap-learn)[arguments]: Disable
one failing test.
Change-Id: Ic8f5f60f7d7bea0c24b417932daab3d54813d5fd
2024-05-05 22:38:17 +02:00
ba92122e53
gnu: python-umap-learn: Update to 0.5.6.
...
* gnu/packages/machine-learning.scm (python-umap-learn): Update to 0.5.6.
Change-Id: If05cf1a9c7ad1d9fd0439bc888983608d70aea75
2024-05-05 22:38:17 +02:00
3c0579849c
gnu: python-pandas-stubs: Accept numpy 1.23.
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* gnu/packages/python-science.scm (python-pandas-stubs)[arguments]: Add phase
'relax-requirements.
Change-Id: I62e04574d53abd7d67068d08475522dd8989dcca
2024-05-05 22:38:17 +02:00
22eeb8f16e
gnu: python-dask: Disable all tokenize tests.
...
* gnu/packages/python-xyz.scm (python-dask)[arguments]: Ignore the test file.
Change-Id: Icbd4845361aa57c493f473ab87a15ade8a20a65f
2024-05-05 22:38:17 +02:00
1295abd0af
Revert "gnu: python-numpy: Update to 1.26.0."
...
numba cannot use numpy > 1.24.
This reverts commit 6b8efd211fbd619e80628d2a78f99c6afc18723e.
2024-05-05 22:38:17 +02:00
5450886934
gnu: python-numpy: Update to 1.26.0.
...
* gnu/packages/python-xyz.scm (python-numpy): Update to 1.26.0.
[build-system]: Use pyproject-build-system.
[arguments]: Move test flags to #:test-flags; add phase
'use-setuptools-backend.
[native-inputs]: Remove gfortran; add replace python-cython with
python-cython-3; add meson/newer and ninja.
Change-Id: I783bbca58624bf6f047056ba21d838f5ecb09ac2
2024-05-05 22:38:17 +02:00
2a7e513803
gnu: python-tabulate: Enable tests and fix version string.
...
* gnu/packages/python-xyz.scm (python-tabulate)[arguments]: Enable tests.
[native-inputs]: Add python-pytest and python-setuptools-scm.
Change-Id: I14073151916fd637d83905c03e76b96c390db917
2024-05-05 22:38:16 +02:00
92259a5d4b
gnu: python-pandas-stubs: Update tests.
...
This is a follow-up to adding ORC support to pyarrow.
* gnu/packages/python-science.scm (python-pandas-stubs)[arguments]: Disable
more tests that are due to enabling ORC support to pyarrow.
Change-Id: I8c3ca6afff8128792738251c85a1dba3dc3b0569
2024-05-05 22:38:16 +02:00
53b2fe2973
gnu: python-scikit-bio: Update to 0.6.0.
...
* gnu/packages/patches/python-scikit-bio-1887.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/bioinformatics.scm (python-scikit-bio): Update to 0.6.0.
[source]: Remove patch.
[arguments]: Disable skbio.diversity doctest; remove 'compatibility phase.
[propagated-inputs]: Add python-biom-format; remove python-ipython and
python-matplotlib.
Change-Id: I9bd9e0fd72f5f1b80ef6ff61c52da5fd56a715ed
2024-05-05 22:38:16 +02:00
e9d70b85eb
gnu: python-biom-format: Untangle from python-scikit-bio.
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* gnu/packages/bioinformatics.scm (python-biom-format)[arguments]: Add phase
'pandas-compatibility; disable tests that need sciki-bio.
[propagated-inputs]: Remove python-scikit-bio.
Change-Id: Ifd528d256a1c75962fb05aef5602edbf67a5af26
2024-05-05 22:38:16 +02:00
24bf2329a4
gnu: python-anndata: Update to 0.10.7.
...
* gnu/packages/python-xyz.scm (python-anndata): Update to 0.10.7.
[arguments]: Patch conftest.py; adjust tests; remove old patch for version
string; add phase 'set-numba-cache-dir.
[native-inputs]: Add python-awkward, python-dask, python-distributed,
python-hatchling, python-hatch-vcs, python-loompy, python-matplotlib,
python-pytest-doctestplus, and python-pytest-xdist.
[propagated-inputs]: Add python-array-api-compat and python-exceptiongroup.
Change-Id: I3099cbfbb1865743c75d32243be9e5a59df1507d
2024-05-05 22:38:16 +02:00
eb866b3699
gnu: Add python-array-api-compat.
...
* gnu/packages/python-xyz.scm (python-array-api-compat): New variable.
Change-Id: Ibfd701630b41f860c7ad4df57fd3624d9c5b7752
2024-05-05 22:38:16 +02:00
a3ff747a48
gnu: Add python-awkward.
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* gnu/packages/python-xyz.scm (python-awkward): New variable.
Change-Id: Ie4f9b12d3662b9029f6e042f9c3a4d547073a6e7
2024-05-05 22:38:16 +02:00
fe780b55b4
gnu: Add python-awkward-cpp.
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* gnu/packages/python-xyz.scm (python-awkward-cpp): New variable.
Change-Id: I68f7e314aa6b575eb7135aa5308c327d5f6bf3ea
2024-05-05 22:38:16 +02:00
d4c62ff301
gnu: Add python-scikit-build-core.
...
* gnu/packages/python-science.scm (python-scikit-build-core): New variable.
Change-Id: If234d19d720afe88f6893bdd36fcc4955a45c5d3
2024-05-05 22:38:16 +02:00
07c7b342bb
gnu: python-distributed: Update to 2024.4.2.
...
* gnu/packages/python-science.scm (python-distributed): Update to 2024.4.2.
[propagated-inputs]: Add python-dask-expr.
[arguments]: Adjust tests.
Change-Id: I9d3b45d14ae052f3a5a5dec3587bc01d13e4b71f
2024-05-05 22:38:16 +02:00
f3a80df770
gnu: Add python-dask-expr.
...
* gnu/packages/python-science.scm (python-dask-expr): New variable.
Change-Id: I691593ab713fe865c771aa68b5521c4c10cc58f6
2024-05-05 22:38:16 +02:00
cc67370ca1
gnu: python-partd: Update to 1.4.1.
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* gnu/packages/python-xyz.scm (python-partd): Update to 1.4.1.
[propagated-inputs]: Remove python-blosc.
Change-Id: I3aff28899339f9ffaa47b6f5c81e0e68ce660963
2024-05-05 22:38:16 +02:00
dff3357bb6
gnu: python-dask: Update to 2024.4.2.
...
* gnu/packages/python-xyz.scm (python-dask): Update to 2024.4.2.
[arguments]: Disable a few tests.
Change-Id: I759ddee2ec49fbf74f368c3313f7215906b0e5a2
2024-05-05 22:38:16 +02:00
fef6edecbc
gnu: python-tables: Update to 3.7.0.
...
* gnu/packages/python-xyz.scm (python-tables): Update to 3.7.0.
[propagated-inputs]: Add python-packaging and python-py-cpuinfo.
Change-Id: I8653bef9a07bb898933b249aad92ddb2b79b8d85
2024-05-05 22:38:16 +02:00
dd6f87e492
gnu: python-pyarrow: Build with ORC support.
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* gnu/packages/databases.scm (python-pyarrow)[propagated-inputs]: Add
apache-orc.
[arguments]: Set PYARROW_WITH_ORC variable.
Change-Id: Ic35cd1db75349ecb51d35815d710d8ca3a303b00
2024-05-05 22:38:16 +02:00
8647aaaa14
gnu: apache-arrow: Build with ORC.
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* gnu/packages/databases.scm (apache-arrow)[arguments]: Set options needed to
build with ORC support; remove unused options
-DBENCHMARK_ENABLE_GTEST_TESTS=OFF and -DARROW_GLOG=ON.
[inputs]: Add apache-orc.
Change-Id: Icabe6e3a73478c8464ea1e8efc103899da8e5a86
2024-05-05 22:38:16 +02:00
442eba98be
gnu: Add apache-orc.
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* gnu/packages/databases.scm (apache-orc): New variable.
Change-Id: I9e7df4a03a5d2f258ff44d9705f539f9fc925a99
2024-05-05 22:38:16 +02:00
adf54dea4e
gnu: python-pandas-stub: Update to 2.1.1.230928.
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This is a follow-up to commit ff2d0ecfca
2024-05-05 22:38:16 +02:00
9953207f3e
gnu: python-tabulate: Update to 0.9.0.
...
* gnu/packages/python-xyz.scm (python-tabulate): Update to 0.9.0.
[build-system]: Use pyproject-build-system.
Change-Id: If360e5be6433b35308b76bd1284bb6ddb74008e8
2024-05-05 22:38:16 +02:00
5e7da50260
gnu: python-pandas-2: Fix version.
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* gnu/packages/python-science.scm (python-pandas-2)[arguments]: Write version
string to "_version.py", not "_version_meson.py" to avoid reporting the
version as "0+unknown".
Change-Id: I1a18814e37c023102714326bc8bd505705234205
2024-05-05 22:38:16 +02:00
b343aef5aa
gnu: python-scikit-learn: Update to 1.4.2.
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* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 1.4.2.
[native-inputs]: Replace python-cython-0.29.35 with python-cython-3.
Change-Id: Id8be08f931bf250a8ecb8bc46b44d7148b4c4a2f
2024-05-05 22:38:16 +02:00
6be3c24d82
gnu: python-cython-3: Update to 3.0.8.
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* gnu/packages/python-xyz.scm (python-cython-3): Update to 3.0.8.
Change-Id: I9129a7837cefea0b95b0a3c3cdf73997d91f7484
2024-05-05 22:38:16 +02:00
6962b32a2b
gnu: python-pyjanitor: Update to 0.27.0.
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* gnu/packages/python-science.scm (python-pyjanitor): Update to 0.27.0.
[arguments]: Disable a few more tests; add phase 'pandas-compat.
Change-Id: Ia8891971a687342166f30ded11f9e341a208d95e
2024-05-05 22:38:16 +02:00
5def84031f
gnu: tadbit: Use G-expression.
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* gnu/packages/bioinformatics.scm (tadbit)[arguments]: Use G-expression.
Change-Id: I4fe4afc41eb3442f243b0e415ddcb363be36ce7f
2024-05-05 22:38:16 +02:00
8f8cee9ed9
gnu: r-reticulate: Update to 1.36.1.
...
* gnu/packages/cran.scm (r-reticulate): Update to 1.36.1.
Change-Id: I7119ca05b8411209c617be318806b3ff4bc3b530
2024-05-05 22:38:16 +02:00
297e88edff
gnu: python-xarray: Disable tests that are known to fail.
...
* gnu/packages/python-science.scm (python-xarray)[arguments]: Disable two
tests.
Change-Id: I70954173e0aca5a377cf19476e9390a97febadc7
2024-05-05 22:38:15 +02:00
74dd2def7f
gnu: python-pandas: Default to version 2.x.
...
* gnu/packages/python-science.scm (python-pandas): Define as alias for
python-pandas-2; rename existing definition to...
(python-pandas-1): ...this new variable.
Change-Id: If359e3b2d42c683d7d0152b1757bbc5a979c999b
2024-05-05 22:38:15 +02:00
d85a19a29c
gnu: python-scikit-opt: Add missing input.
...
* gnu/packages/python-science.scm (python-scikit-opt)[propagated-inputs]: Add
python-pytorch.
Change-Id: I037cc43bedeaebb05bf038c0bca72919f8c27c40
2024-05-05 22:38:15 +02:00
da4006d474
gnu: python-plastid: Replace nose with pytest.
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* gnu/packages/bioinformatics.scm (python-plastid)[native-inputs]: Replace
python-nose with python-pytest.
Change-Id: Ie0e5362d2304d3af0bcb1405fa0c1ad36fb2ace6
2024-05-05 22:38:15 +02:00
854c42e30c
gnu: Add python-metacells.
...
* gnu/packages/bioinformatics.scm (python-metacells): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I4fc760dc4317bde79c815f441ad0cc453248990a
2024-05-05 22:38:15 +02:00
da18b8620f
gnu: Add python-cvxpy.
...
* gnu/packages/python-science.scm (python-cvxpy): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I440ab3768cbc4e78364dc31cf9484effd9670f49
2024-05-05 22:38:15 +02:00
2c0cf38f04
gnu: Add python-ecos.
...
* gnu/packages/python-science.scm (python-ecos): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I83d9b746f5f3563f417efc5d18911f2eb04f201c
2024-05-05 22:38:15 +02:00
a0971243bc
gnu: Add python-osqp.
...
* gnu/packages/python-science.scm (python-osqp): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: Id6f1665505469fd6543046636b82d0730b319df3
2024-05-05 22:38:15 +02:00
d051ef0913
gnu: Add python-qdldl.
...
* gnu/packages/python-science.scm (python-qdldl): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I523ecb2292c9b514b548e2130d0d43bb77317b00
2024-05-05 22:38:15 +02:00
d470a9aa54
gnu: Add python-scs.
...
* gnu/packages/python-science.scm (python-scs): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I6c5ecdac4b558aab4b8ee396dff1dfc9cdec07f0
2024-05-05 22:38:15 +02:00
670dcc8e4c
gnu: Add python-fastcluster.
...
* gnu/packages/python-science.scm (python-fastcluster): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: Ifc5229a4d00f581eb358a1f41fc3479fd1c33c2e
2024-05-05 22:38:15 +02:00
c4eccd2066
gnu: Add python-clarabel.
...
* gnu/packages/python-science.scm (python-clarabel): New variable.
Change-Id: I28459162460ca9bf9e9557122f611c677afadc27
2024-05-05 22:38:15 +02:00
94ea83d9ef
gnu: Add rust-amd-0.2.
...
* gnu/packages/crates-io.scm (rust-amd-0.2): New variable.
Change-Id: I28d4e0d6bd9b590ca61df9152f91641408e48e5a
2024-05-05 22:38:15 +02:00
d1eda517f3
gnu: Add python-param.
...
* gnu/packages/python-xyz.scm (python-param): New variable.
Change-Id: Idad928488d7c306c969b4484a3cd22661c41d488
2024-05-05 22:38:15 +02:00
83262c971e
gnu: Add python-multiscale-spatial-image.
...
* gnu/packages/python-xyz.scm (python-multiscale-spatial-image): New variable.
Change-Id: I05a0b3a93091148917fade831faefb88c13bbc6f
2024-05-05 22:38:15 +02:00
407fcd510b
gnu: Add python-colorcet.
...
* gnu/packages/python-xyz.scm (python-colorcet): New variable.
Change-Id: I8b3f6d9a132d028f56330308b034d263e162f0f9
2024-05-05 22:38:15 +02:00
859953f60a
gnu: Add python-nbmake.
...
* gnu/packages/python-check.scm (python-nbmake): New variable.
Change-Id: If062d0e34329e99b5bb87588e7ddf149c65bfdfb
2024-05-05 22:38:15 +02:00
5f186e2f79
gnu: Add python-pyct.
...
* gnu/packages/python-xyz.scm (python-pyct): New variable.
Change-Id: Ia207d5aa9d66fd2bf3616049c042fbb12e50928d
2024-05-05 22:38:15 +02:00
6f71c4ab01
gnu: Add rust-blas-0.22.
...
* gnu/packages/crates-io.scm (rust-blas-0.22): New variable.
Change-Id: Ic7bcbde20b6552659255f4ff11adde8fb1eeea45
2024-05-05 22:38:15 +02:00
aed5e5965f
gnu: Add rust-blas-sys-0.7.
...
* gnu/packages/crates-io.scm (rust-blas-sys-0.7): New variable.
Change-Id: Ibfa2ab61256527e34e9ff9a8f7d871990ffbeda7
2024-05-05 22:38:15 +02:00
95478222c0
gnu: Add rust-lapack-0.19.
...
* gnu/packages/crates-io.scm (rust-lapack-0.19): New variable.
Change-Id: I2c32db5e4028432e030005c7ee16773d0f052d21
2024-05-05 22:38:15 +02:00
82f83cafb9
gnu: Add rust-lapack-sys-0.14.
...
* gnu/packages/crates-io.scm (rust-lapack-sys-0.14): New variable.
Change-Id: Id8fa94a06c231f3864040d2c428ac81042803adf
2024-05-05 22:38:15 +02:00
c9d9b9572b
gnu: Add python-xarray-schema.
...
* gnu/packages/python-science.scm (python-xarray-schema): New variable.
Change-Id: I4ca650f2c2872698fc22392add169f44b9e2e035
2024-05-05 22:38:15 +02:00
061885faec
gnu: python-xarray-datatree: Add missing input.
...
* gnu/packages/python-science.scm (python-xarray-datatree)[native-inputs]:
Add python-setuptools-scm.
Change-Id: I86a7280ba687385edb15f30dae1a20e3811a0beb
2024-05-05 22:38:15 +02:00
536228e65e
gnu: python-pooch: Update to 1.8.1.
...
* gnu/packages/python-xyz.scm (python-pooch): Update to 1.8.1.
[arguments]: Enable tests, but not all of them.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-pytest and python-setuptools-scm.
[propagated-inputs]: Add python-platformdirs; remove python-appdirs and
python-packaging.
Change-Id: I3a0f73db5c0d78c9cee24c73402e9b1e34e26b4a
2024-05-05 22:38:15 +02:00
749cb3c520
gnu: Add python-dask-image.
...
* gnu/packages/python-xyz.scm (python-dask-image): New variable.
Change-Id: I77c22bba69d73ce39681064bfdcc05b2b360ea26
2024-05-05 22:38:14 +02:00
d6c95d4208
gnu: Revmoe go-github-com-syndtr-goleveldb.
...
This package is a duplicate to go-github-com-syndtr-goleveldb-leveldb.
* gnu/packages/ipfs.scm: Revmoe (gnu packages syncthing) module.
(kubo) [inputs]: Replace go-github-com-syndtr-goleveldb with
go-github-com-syndtr-goleveldb-leveldb.
* gnu/packages/syncthing.scm (go-github-com-syndtr-goleveldb): Remove
variable.
Change-Id: I8641a18a3d97f570f3bbbd849f7dabdea4e41b01
2024-05-05 21:24:10 +01:00
b2dbd7ca8a
gnu: go-go-uber-org-atomic: Update to 1.11.0.
...
The upstream suggested to update to the latest version to resolve
failing tests on RISK-V, see
<https://github.com/uber-go/atomic/issues/164 >.
* gnu/packages/golang-xyz.scm (go-go-uber-org-atomic): Update to 1.11.0.
[arguments]: <#:tests?>: Enable tests on all platforms.
Change-Id: I6df21cfaebb9e4d4a609e93f3fe4bfea2bff5e8d
2024-05-05 21:11:02 +01:00
79c597c0ee
gnu: zsnes: Relocate to (gnu packages emulator).
...
* gnu/packages/games.scm (zsnes): Move to...
* gnu/packages/emulators.scm (zsnes): ... here.
Change-Id: I739e0f3b221790b6f780362d884209fff0aed3d7
2024-05-05 14:03:17 -04:00
e276f5ed19
gnu: mupen64plus-ui-console: Update to 2.5.9.
...
* gnu/packages/emulators.scm (mupen64plus-ui-console): Update to 2.5.9.
Change-Id: I9794dc81e0417c9879820400dbdb002faec35cdc
2024-05-05 14:03:16 -04:00
8521d0b81e
gnu: mupen64plus-video-z64: Update to 2.5.9.
...
* gnu/packages/emulators.scm (mupen64plus-video-z64): Update to 2.5.9.
[source]: Delete patches.
* gnu/packages/patches/mupen64plus-video-z64-glew-correct-path.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): De-register it.
Change-Id: Ic8022c3a88f88f48644cc694e0a18c0b0a6745a1
2024-05-05 14:03:16 -04:00
71e99742ab
gnu: mupen64plus-video-rice: Update to 2.5.9.
...
* gnu/packages/emulators.scm (mupen64plus-video-rice): Update to 2.5.9.
Change-Id: Ie2d26d6c62a09c0077e4c28869bf33b2c275d01f
2024-05-05 14:03:16 -04:00
925b95ff23
gnu: mupen64plus-video-glide64mk2: Update to 2.5.9.
...
* gnu/packages/emulators.scm (mupen64plus-video-glide64mk2): Update to 2.5.9.
Change-Id: I77afdd1c954411203e75248d0d4bf4709db375bb
2024-05-05 14:03:16 -04:00
52bfa64956
gnu: mupen64plus-video-arachnoid: Update to 2.5.9.
...
* gnu/packages/emulators.scm (mupen64plus-video-arachnoid): Update to 2.5.9.
Change-Id: I2751cca9a553029fbceba59762e498931a1f9946
2024-05-05 14:03:16 -04:00
9cab740594
gnu: mupen64plus-rsp-z64: Update to 2.5.9.
...
* gnu/packages/emulators.scm (mupen64plus-rsp-z64): Update to 2.5.9.
Change-Id: Ibf9b67d37506f742c50397ff269586df1636af4d
2024-05-05 14:03:15 -04:00
9f11f67043
gnu: mupen64plus-rsp-hle: Update to 2.5.9.
...
* gnu/packages/emulators.scm (mupen64plus-rsp-hle): Update to 2.5.9.
Change-Id: I68c1f92fd2be820ba437696d61d064a97ed4581e
2024-05-05 14:03:15 -04:00
506425d6bd
gnu: mupen64plus-input-sdl: Update to 2.5.9.
...
* gnu/packages/emulators.scm (mupen64plus-input-sdl): Update to 2.5.9.
Change-Id: Idec4c3633767d151101beeba3ef2317e54d3f6f4
2024-05-05 14:03:15 -04:00
2b25208c81
gnu: mupen64plus-audio-sdl: Update to 2.5.9.
...
* gnu/packages/emulators.scm (mupen64plus-audio-sdl): Update to 2.5.9.
Change-Id: If888cf62ee2247438d47cd385d7812ad22fb8068
2024-05-05 14:03:15 -04:00
4e6701a09a
gnu: mupen64plus-core: Update to 2.5.9.
...
* gnu/packages/emulators.scm (mupen64plus-core): Update to 2.5.9.
[native-inputs]: Add nasm.
Change-Id: I9960b697124c130e75f765d55e1ce8a56dda168b
2024-05-05 14:03:15 -04:00
e89763682e
gnu: mupen64plus-video-glide64: Update to 2.5.9.
...
* gnu/packages/emulators.scm (mupen64plus-video-glide64): Update to 2.5.9.
[phases]: Delete use-sdl2 phase.
Change-Id: Ic7359fb764f40fa25c553ab15e39f47963d3301b
2024-05-05 14:03:14 -04:00
da9f509b03
services: guix: Use Shepherd 0.10 API for actions.
...
The ‘action’ method was deprecated in Shepherd 0.10.0.
* gnu/services/base.scm (shepherd-set-http-proxy-action)
(shepherd-discover-action): Use ‘perform-service-action’ instead of the
now-deprecated ‘action’ method.
Change-Id: Ibe1c79a44148596292c2c8907011ec787f8a9ddd
2024-05-05 12:06:23 +02:00
ef8ab6ab66
gnu: guix-configuration: Improve offload build-machines.
...
It’s currently difficult to programmatically add a build-machine, because the
`service-extension' mechanism is the only facility which can do that. It
relies on the `guix-service-type', ala:
(service-extension guix-service-type
(guix-extension (build-machines (list ...))))
...but `guix-service-type' is already instantiated as part of
`%base-services', and replacing it may lose other configuration, like
substitute servers and authorized keys.
Additionally, a default value of `#f' for the build-machines field requires
guarding uses of the field with:
(or (guix-build-machines config) '())
Changing the default to be the empty list avoids that. One can now add
build-machines with code such as:
(modify-services %base-services
(guix-service-type
config =>
(guix-configuration
(inherit config)
(authorized-keys
(cons %build-machine-key
(guix-configuration-authorized-keys config)))
(build-machines (cons #~(build-machine ...)
(guix-configuration-build-machines config))))))
* gnu/services/base.scm (guix-configuration): Rename `guix-build-machines' to
`guix-configuration-build-machines' and export it. Change the default from
`#f' to the empty list.
* gnu/services/base.scm (guix-activation): Update the build-machines test and
reverse the conditions.
Change-Id: I6780c6a5579fd9d4b4f22ee2b2bf7ba7a0454407
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-04 19:14:27 +02:00
dde37247fa
gnu: gnucash: Update to 5.6.
...
* gnu/packages/gnucash.scm (gnucash): Update to 5.6.
Change-Id: I3646082d628470327fbd9deec6111de8c1eec921
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-04 19:14:27 +02:00
aa9e639216
gnu: perl-finance-quote: Update perl-finance-quote.
...
* gnu/packages/web.scm (perl-finance-quote): Update to 1.59.
[source] remove patch
* gnu/packages/patches/perl-finance-quote-unuse-mozilla-ca.patch: Remove file.
Change-Id: I3646082d628470327fbd9deec6111de8c1eec921
Change-Id: Ibe50f9736bcbe4e628c05f86c0e0be8bd335d4c8
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-04 19:14:26 +02:00
ec9c5a8ff5
gnu: Add perl-spreadsheet-xlsx.
...
* gnu/packages/perl.scm (perl-spreadsheet-xlsx): New variable.
Change-Id: Iec4fc26945bd2f154587d4b13b593fd947bb0e5a
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-04 19:14:26 +02:00
92641467b4
gnu: Add perl-spreadsheet-parseexcel.
...
* gnu/packages/perl.scm (perl-spreadsheet-parseexcel): New variable.
Change-Id: I0dfbf49f4b8b1865a738edc805d3dc83b038a124
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-04 19:14:26 +02:00
6a23664cd8
gnu: Add perl-digest-perl-md5.
...
* gnu/packages/perl.scm (perl-digest-perl-md5): New variable.
Change-Id: Ic656fef7bbc77790d114812f0c9dcafa1586e357
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-04 19:14:26 +02:00
e175175a11
gnu: Add perl-html-tokeparser-simple.
...
* gnu/packages/web.scm (perl-html-tokeparser-simple): New variable.
Change-Id: If779dbe29de05697d87143b38d986d5ff7fa2c8f
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-04 19:14:26 +02:00
7d6da9412e
gnu: Add perl-sub-override.
...
* gnu/packages/crates-io.scm (perl-sub-override): New variable.
Change-Id: I5a366862bb5bfd777094e2d58239d50aad95577c
-- >8 --
Originally part of https://issues.guix.gnu.org/44447
Change-Id: Ib4542ceedcff114e1184fc8bafac0f76985b78be
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-04 19:14:26 +02:00
57bb1998a0
gnu: Add perl-string-util.
...
* gnu/packages/perl.scm (perl-string-util): New variable.
Change-Id: Iaef13963efb3d795bcc0c16bcdd72c112894f886
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-04 19:14:26 +02:00
421372c4cd
gnu: Add perl-web-scraper.
...
* gnu/packages/web.scm (perl-web-scraper): New variable.
Change-Id: I3d0a476ca6c09bc20391303f99b260410f16de65
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-04 19:14:26 +02:00
f2d83b3352
gnu: Add perl-html-treebuilder-xpath.
...
* gnu/packages/web.scm (perl-html-treebuilder-xpath): New variable.
Change-Id: I4069eae36a8c49a507e89c18fed90e0e53fdde4d
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-04 19:14:25 +02:00
9ee2e87dfe
gnu: Add perl-html-selector-xpath.
...
* gnu/packages/web.scm (perl-html-selector-xpath): New variable.
Change-Id: Ib4ccaf4e7f5fdbb90118d6ba16a478be26bbed84
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-04 19:14:25 +02:00
3ca4d48322
gnu: aqbanking: Update to 6.5.4.
...
* gnu/packages/gnucash (aqbanking): Update to 6.5.4.
Change-Id: I8d10562e1fc8517bee946792ad1ac901a26137d5
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-04 19:14:25 +02:00
96a0a7431f
gnu: gwenhywfar: Update to 5.10.2.
...
* gnu/packages/gnucash.scm (gwenhywfar): Update to 5.10.2.
[inputs]: add libxml2.
[arguments]: <configure-flags>: Remove flag that's not recognised
--with-openssl-includes; add --with-libxml2-code, --enable-system-certs
and --disable-binreloc
Change-Id: I4085779e3ed7ecb621dd3d0b5427e92962466033
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-04 19:14:25 +02:00
7d9ad8f3a6
services: cuirass: Remove use-substitutes? configuration option.
...
As of Cuirass commit 9a1452ee021c9f773424961cfeef47ca0b7c5c5a, this option
seems to be unused and kept for back compatibility there.
* gnu/services/cuirass.scm (<cuirass-configuration>): Remove use-substitutes?
field.
(cuirass-shepherd-service): Remove the option.
* doc/guix.texi (Continuous Integration): Remove option documentation.
Change-Id: I933550ce76eecdf918b07891aa8212fd30a7c87e
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-04 19:14:25 +02:00
70f277d0e4
services: cuirass: Add new configuration options.
...
* gnu/services/cuirass.scm (<cuirass-configuration>): Add ttl and threads
fields.
(cuirass-shepherd-service): Handle the new options.
* doc/guix.texi (Continuous Integration): Document them.
Change-Id: I4387fbd7bf6766f4a54801f35c7ed82ce4eb9645
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-04 19:14:25 +02:00
2cd6831161
services: cuirass: Use separate extra options for cuirass web process.
...
Currently, "extra-options" is passed to both "cuirass register" and "cuirass
web" processes. This makes it impractical since the extra parameters have to
be intended for and supported by both processes.
* gnu/services/cuirass.scm (<cuirass-configuration>): Add a web-extra-options
field.
(cuirass-shepherd-service): Replace extra-options with web-extra-options for
cuirass web.
* doc/guix.texi (Continuous Integration): Document the changes.
Change-Id: Iba79c559ea8267aaf8f25248f3d18ed7b352cb60
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-04 19:14:25 +02:00
9e184d5e54
gnu: gmime: Update to 3.2.14.
...
* gnu/packages/mail.scm (gmime): Update to 3.2.14.
[native-inputs]: Replace autoconf by autoconf-2.71.
Change-Id: If72864085d085e55883ea1474b1c05ca1610d21a
2024-05-04 12:27:41 +02:00
fc607d3689
gnu: cava: Update to 0.10.1.
...
* gnu/packages/audio.scm (cava)[version]: Update to 0.10.1.
[native-inputs]: Add pkg-config.
[inputs]: Add alsa-lib and pipewire.
Change-Id: Iffa80b22199a032111ca06e8ed583139f35f2fab
2024-05-04 10:45:33 +03:00
9bf19720b9
gnu: linux-libre 6.1: Update to 6.1.89.
...
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.89.
(linux-libre-6.1-pristine-source): Update hashes.
Change-Id: Id48a19cc0d59b11bf17179eb5dd860ed37ac35dc
Signed-off-by: Leo Famulari <leo@famulari.name>
2024-05-04 00:17:12 -04:00
aa9ac25220
gnu: emacs-lsp-metals: Update to 1.2.0-1.01060e9.
...
* gnu/packages/emacs-xyz.scm (emacs-lsp-metals): Update to 1.2.0-1.01060e9.
Change-Id: I6d396290aa0935a5c1cba91c95313df28c1c6949
2024-05-02 21:06:37 +02:00
5010a51fc9
gnu: dezyne: Update to 2.18.2.
...
* gnu/packages/dezyne.scm (dezyne)[version,source]: Update to 2.18.2.
Change-Id: I604b4dc405c28a7ee711ae9f00106ab1b0685f9f
2024-05-02 13:15:03 +02:00
04d4e772e5
gnu: scilab: Improve package management robustness in scilab-cli.
...
* gnu/packages/maths.scm (scilab)[source]<origin>: Improve
package management robustness in scilab-cli by allowing
tbx_build_help to log the scilab mode incompatibility error and not
process the rest of the function instead of failing with it.
* gnu/packages/patches/scilab-tbx_build_help.patch :
Add patch.
* gnu/local.mk(dist_patch_DATA): Add
gnu/packages/patches/scilab-tbx_build_help.patch.
Change-Id: I8ee94afb4aba906cbc8c7ca67f4c89aa0cf55ae6
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-01 23:45:34 +02:00
4dec5a30fe
gnu: scilab: Fixup and improve compilerDetection.sh script.
...
* gnu/packages/maths.scm (scilab)
[arguments]<#:phases>: Fix compilerDetection.sh script in phase
bootstrap-dynamic_link-scripts.
[source]<origin>(patches): Add scilab-better-compiler-detection.patch.
* gnu/packages/patches/scilab-better-compiler-detection.patch: Add
file.
* gnu/local.mk(dist_path_DATA): Add
scilab-better-compiler-detection.patch.
Change-Id: I7b1c78c4637fa1bc965eca8c516bf0b6cd4b92d1
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-01 23:45:24 +02:00
df1a6c7259
gnu: scilab: Cleanup.
...
* gnu/packages/maths.scm (scilab):
[arguments]<#:phases>: In pre-build phase, remove unecessary
code, due to the former introduction of the rewrap-scilab-cli
phase. More robust version setting in the set-version phase. It
anticipates for the next release which will not use "main" anymore.
[source]<origin>(snippet) Sort dynamic_link deleted files.
[inputs]: Add bash-minimal.
Change-Id: I49b17886405e1ed8161e71b51655fa393ff7f10b
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-01 23:44:15 +02:00
a47fe0fdc4
gnu: xdot: Update to 1.3.
...
* gnu/packages/graphviz.scm (xdot): Update to 1.3.
[source]: Download the sources from GitHub as the PyPI tarbal is missing
some test files.
[arguments]: Use Gexps. Add "start-xserver" and "set-test-environment"
to setup test environment properly. Simplify "wrap" phase. Replace "check"
phase to run "test.py".
[native-inputs]: Add "gobject-introspection" and "xorg-server-for-tests".
[inputs]: Add "bash-minimal", "mesa", "mesa-opencl", "python-numpy"
and "vulkan-loader".
Change-Id: I7a68e9f5c1b66a6539b83623a457e16edacff012
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-01 22:24:49 +02:00
2aeb9faa42
gnu: spirv-llvm-translator: Update to 18.1.0.
...
This fixes a build failure (after mesa-updates merge, perhaps from the
spirv-headers update). The package version corresponds to the LLVM version
targeted, so inputs needed to be updated.
* gnu/packages/vulkan.scm (spirv-llvm-translator): Update to 18.1.0.
[inputs]: Replace llvm-15 with llvm-18.
[native-inputs]: Ditto. Replace clang-15 with clang-18.
Change-Id: I8ad51dd019e508a14b479a7481de62cdae446425
2024-05-01 15:29:53 -04:00
10aa88ea01
gnu: guile-git: Update to 0.7.0.
...
* gnu/packages/guile.scm (guile-git): Update to 0.7.0.
Change-Id: I7a0a9d50a0f8a788963b05029a37ac9450ffa185
2024-05-01 17:26:18 +02:00
e2ba58a67f
gnu: Add emacs-ob-asymptote.
...
* gnu/packages/emacs-xyz.scm (emacs-ob-asymptote): New variable.
Change-Id: I022557ed6eb6473e26842a5e72d9abdd1d516d35
2024-05-01 15:37:45 +02:00
4115590ed1
gnu: emacs-dockerfile-mode: Update to 1.9.
...
* gnu/packages/emacs-xyz.scm (emacs-dockerfile-mode): Update to 1.9.
Change-Id: Ie3fd4d3701d720ece886b3e873b9637aeb468fea
2024-05-01 14:00:21 +02:00
1b4c846d83
gnu: emacs-polymode-ansible: Update to 0.4.0.
...
* gnu/packages/emacs-xyz.scm (emacs-polymode-ansible): Update to 0.4.0.
[propagated-inputs]: Add EMACS-ANSIBLE.
Change-Id: I1d15b309332f1bb82a0d515195eb2d1e8bd8cc34
2024-05-01 13:58:43 +02:00
97f2f03c62
gnu: Add emacs-ansible.
...
* gnu/packages/emacs-xyz.scm (emacs-ansible): New variable.
Change-Id: Id8fc420fff4817faea14fcf8c115c13a64e49d32
2024-05-01 13:58:43 +02:00
7f766c9ba4
gnu: emacs-org-fc: Update to 0.6.1.
...
* gnu/packages/emacs-xyz.scm (emacs-org-fc): Update to 0.6.1.
Change-Id: Ib64456aa31d51bd3dea738ce895e4b8d5b56cbb0
2024-05-01 12:34:09 +02:00
b6b97fafe8
gnu: emacs-org-contrib: Update to 0.5.
...
* gnu/packages/emacs-xyz.scm (emacs-org-contrib): Update to 0.5.
Change-Id: Ib5f3f6ca30c3a5a72ce855db416c68b8d3e00aad
2024-05-01 12:29:29 +02:00
6cb1f6b601
gnu: emacs-posframe: Update to 1.4.3.
...
* gnu/packages/emacs-xyz.scm (emacs-posframe): Update to 1.4.3.
Change-Id: I806412d1e4115f22443d1d018fde9dfefd315417
2024-05-01 12:26:32 +02:00
c06e18c199
gnu: emacs-vundo: Update to 2.3.0.
...
* gnu/packages/emacs-xyz.scm (emacs-vundo): Update to 2.3.0.
Change-Id: I7a6847fa8d76d55ea4124a31c7f95d035304ff15
2024-05-01 12:21:49 +02:00
5267dbee62
gnu: emacs-ement: Update to 0.15.
...
* gnu/packages/emacs-xyz.scm (emacs-ement): Update to 0.15.
Change-Id: Ie746965ddd693b232f7dce9c1562b84ac169f840
2024-05-01 12:17:12 +02:00
7d4ae2fca7
gnu: emacs-org-modern: Update to 1.2.
...
* gnu/packages/emacs-xyz.scm (emacs-org-modern): Update to 1.2.
[synopsis]: Fix capitalization.
[description]: Fix ambiguity between package and project name.
Change-Id: I453db305d3bb529ca14414d3542dc8374c880403
2024-05-01 10:22:21 +02:00
6e9529eef9
gnu: firefox-decrypt: Update to 1.1.1.
...
* gnu/packages/gnuzilla.scm (firefox-decrypt)[version]: Update to 1.1.1.
[arguments]<#:builder>: Update patch shebang substitute.
Change-Id: Iceabe4883b103e2cde9eac808316986db97b760c
2024-05-01 10:39:25 +03:00
b32d129ad9
gnu: bats: Update to 1.11.0.
...
* gnu/packages/bash.scm (bats)[version]: Update to 1.11.0.
[arguments]<#:builder>: Filter out symlinks in patch-shebang.
Change-Id: I74405b99f91172c10b8c81caa0f3f46e1df4d74e
2024-05-01 10:05:42 +03:00
7d7fca1942
gnu: jc: Update to 1.25.2.
...
* gnu/packages/admin.scm (jc): Update to 1.25.2.
Change-Id: I076bf285a6fd23ef65f6c094b355c5891c8b76e7
2024-05-01 09:24:57 +03:00
757bbaaf14
gnu: gource: Update to 0.54.
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* gnu/packages/version-control.scm (gource)[version]: Update to 0.54.
[arguments]<#:disallowed-references>: Add tzdata-for-tests.
<#:phases>: Unbundle tinyxml. Set TZDIR environment variable.
<#:configure-flags>: Add --with-tinyxml argument.
[native-inputs]: Add tzdata-for-tests.
[inputs]: Replace pcre with pcre2. Add tinyxml.
Change-Id: I67c2a1ee74582ed3e0a4ec5e6d229c948f9d5265
2024-05-01 09:11:05 +03:00
2e505090ae
gnu: bird: Update to 2.15.1.
...
* gnu/packages/networking.scm (bird): Update to 2.15.1.
Change-Id: Ib30ee5eb503cbbafb066c13221d36059669f3dec
2024-05-01 06:48:55 +03:00
eed1c0adb0
gnu: nickle: Update to 2.97.
...
* gnu/packages/patches/nickle-man-release-date.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/nickle-man-release-date.patch (nickle): Update to 2.97.
[source]: Use patch.
[native-inputs]: Remove field.
[inputs]: Add readline.
Change-Id: Id33d121e9eea9e3124b8891c60047b3943711ade
2024-04-30 22:03:39 -05:00
238a74c7df
gnu: Remove linux-libre 6.7.
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* gnu/packages/linux.scm (linux-libre-6.7-version, linux-libre-6.7-gnu-revision,
deblob-scripts-6.7, linux-libre-6.7-pristine-source, linux-libre-6.7-source,
linux-libre-headers-6.7, linux-libre-6.7): Remove variables.
* gnu/packages/aux-files/linux-libre/6.7-arm.conf,
gnu/packages/aux-files/linux-libre/6.7-arm64.conf,
gnu/packages/aux-files/linux-libre/6.7-i686.conf,
gnu/packages/aux-files/linux-libre/6.7-x86_64.conf: Delete files.
* Makefile.am (AUX_FILES): Remove aforementioned .conf files.
Change-Id: Ic69a65e1fbfa59d893e85d26950f33195ea9fbe1
Signed-off-by: Leo Famulari <leo@famulari.name>
2024-04-30 17:50:21 -04:00
147f1f2e0d
gnu: Add psfex.
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* gnu/packages/astronomy.scm (psfex): New variable.
Change-Id: I073df933b244811cd09343ea4951f481ad76b075
2024-04-30 21:36:14 +01:00
bba6eca509
gnu: Add scamp.
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* gnu/packages/astronomy.scm (scamp): New variable.
Change-Id: If32adb281017858b0e7d5816cecb509af3cec835
2024-04-30 21:36:14 +01:00
Nicolas Goaziou
Aleksandr Vityazev
Daniel Ziltener
Picnoir
Andy Tai
宋文武
Wilko Meyer
chris
Arjan Adriaanse
Rovanion Luckey
James Smith
Timotej Lazar
Sergey Trofimov
Ricardo Wurmus
Mădălin Ionel Patrașcu
nafkhamdc
Maxim Cournoyer
Marco Baggio
Sharlatan Hellseher
Ludovic Courtès
Ian Eure
Steve George
Ahmad Draidi
Danny Milosavljevic
Oleg Pykhalov
Janneke Nieuwenhuizen
Nicolas Graves
Artyom V. Poptsov
John Kehayias
Eric Bavier