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Author SHA1 Message Date
Ricardo Wurmus 82d87ce02a
gnu: r-progeny: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.8.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus 4f0d858841
gnu: r-arrmnormalization: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.26.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus 97e317007c
gnu: r-biocfilecache: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.10.2.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus 049de95de7
gnu: r-iclusterplus: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.22.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus 02684becc9
gnu: r-rbowtie: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.26.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus 2cebc5d135
gnu: r-sgseq: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.20.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus 3dd2450e65
gnu: r-rhisat2: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.2.0.
[arguments]: Add phase to make package reproducible and to avoid shelling out
to 'which'.
[native-inputs]: Remove which.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus a15e52ec78
gnu: r-quasr: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.26.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus 11db82b07c
gnu: r-rqc: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.20.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus a9e5145c32
gnu: r-birewire: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.18.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus 8d766270c4
gnu: r-birta: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-birta): Update to 1.30.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus 643aaf7eaf
gnu: r-ropls: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.0.
[propagated-inputs]: Add r-multidataset.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 7d29dc9c7b
gnu: r-biosigner: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.0.
[propagated-inputs]: Add r-multidataset.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 700072565f
gnu: r-annotatr: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.12.1.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 4390788ea2
gnu: r-rsubread: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.0.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 482ba0b3ed
gnu: r-flowutils: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.50.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 8ad6b23f68
gnu: r-consensusclusterplus: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.50.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus b2a2f32130
gnu: r-flowcore: Update to 1.52.1. 
* gnu/packages/bioconductor.scm (r-flowcore): Update to 1.52.1.
[propagated-inputs]: Remove r-corpcor, r-graph, r-mass, and r-rrcov; add
r-cytolib.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 8042087804
gnu: r-flowmeans: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.46.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus ba71567acd
gnu: r-flowsom: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.18.0.
[propagated-inputs]: Add r-cytoml, r-flowworkspace, and r-rcolorbrewer; remove
r-flowutils.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 4930a89ad5
gnu: r-mixomics: Update to 6.10.6. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.6.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 51ffac455e
gnu: r-rcistarget: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.6.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 42b06298ef
gnu: r-cicero: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 33ce50e322
gnu: r-genie3: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.8.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 3672b74f6f
gnu: r-roc: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-roc): Update to 1.62.0.
[propagated-inputs]: Add r-knitr.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus 9eade2294e
gnu: r-watermelon: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.30.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus f5ef7dd6b7
gnu: r-gdsfmt: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.22.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus 8b941a50ef
gnu: r-bigmelon: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.12.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus 2223bbc726
gnu: r-seqbias: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.34.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus 02c18abe62
gnu: r-reqon: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.32.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus c0cba4b542
gnu: r-wavcluster: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.20.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus cb734c60dc
gnu: r-timeseriesexperiment: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.4.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus 6f5415d5f6
gnu: r-variantfiltering: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.22.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus 053a2127bc
gnu: r-genomegraphs: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-genomegraphs): Update to 1.46.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus e13f977312
gnu: r-wavetiling: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-wavetiling): Update to 1.28.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus e2f481dad0
gnu: r-variancepartition: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.16.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus 0b0906c845
gnu: r-htqpcr: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.40.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus 989be6df99
gnu: r-unifiedwmwqpcr: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.22.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus 418d72142c
gnu: r-illuminaio: Update to 0.28.0. 
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.28.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus db85744ef3
gnu: r-geoquery: Update to 2.54.1. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.54.1.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus 048a43d6a5
gnu: r-scone: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.10.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus 2f223b2115
gnu: r-scdd: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.10.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus 81a125cdb6
gnu: r-noiseq: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.30.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus 9732e690a5
gnu: r-monocle: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.14.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus dc5237f85e
gnu: r-mast: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-mast): Update to 1.12.0.
[propagated-inputs]: Remove r-blme.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus a5cc1f104b
gnu: r-icobra: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.14.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus 0383bd05ce
gnu: r-ihw: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.14.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus 153dc51bfe
gnu: r-lpsymphony: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.14.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus a9649c4138
gnu: r-ebseq: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.26.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus 96030bf718
gnu: r-deds: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-deds): Update to 1.60.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus bba70cda0a
gnu: r-dnacopy: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.60.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus eb3fd3825c
gnu: r-copynumber: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.26.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus 84825e5523
gnu: r-chipexoqual: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.10.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus 2e17cbd733
gnu: r-savr: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-savr): Update to 1.24.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus c88448d4b8
gnu: r-biocsingular: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus 12e2aa96dc
gnu: r-biocneighbors: Update to 1.4.1. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.4.1.
[propagated-inputs]: Remove r-biocgenerics; add r-matrix.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus efd0934733
gnu: r-ruvseq: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.20.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus 2d86dc2062
gnu: r-dnabarcodes: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.16.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus 74bb4cdf57
gnu: r-inspect: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.0.
[propagated-inputs]: Remove r-preprocesscore; add r-genomeinfodb and r-kernsmooth.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus 565bb84b31
gnu: r-plgem: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.58.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus 9c071144a8
gnu: r-rots: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.14.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus 728571fbc6
gnu: r-glimma: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.14.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus ab7f3cbbeb
gnu: r-goseq: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.38.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus b2b5b03115
gnu: r-ctc: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.60.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus b701ed6e83
gnu: r-genomicinteractions: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus bb841742dd
gnu: r-interactionset: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.14.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus 595b6c9a89
gnu: r-riboseqr: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.20.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus 88af7049ea
gnu: r-riboprofiling: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.16.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus b0897fbf95
gnu: r-chipcomp: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.16.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus d77228232d
gnu: r-bayseq: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.20.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus 23ce5ad1d6
gnu: r-qdnaseq: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.22.0.
[propagated-inputs]: Remove r-biocparallel; add r-future and r-future-apply.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus 8f2a4ea18b
gnu: r-cghcall: Update to 2.48.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.48.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus 8341f7062e
gnu: r-cghbase: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.46.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus b6c2f098ba
gnu: r-marray: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.64.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus cf8968d7e6
gnu: r-chippeakanno: Update to 3.20.0. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.20.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus 70eb483a28
gnu: r-graph: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.64.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus 16d49c2a7c
gnu: r-multtest: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.42.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus ba74434fc4
gnu: r-ripseeker: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.26.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus 73883f0f14
gnu: r-diffbind: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.14.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus bcf711b58b
gnu: r-qvalue: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.18.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus 084c651cbf
gnu: r-oligo: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.50.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus 79820b9fe9
gnu: r-oligoclasses: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.48.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus 7778e91a2d
gnu: r-geneplotter: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.64.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus 7ccbaf1b6e
gnu: r-reportingtools: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.26.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus 2e73ea955b
gnu: r-regioner: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.18.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus ddd3673928
gnu: r-hpar: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.28.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus 7a111924ee
gnu: r-annotate: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.64.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus ce5162d09d
gnu: r-affxparser: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.58.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus 1693534f76
gnu: r-affycoretools: Update to 1.58.2. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.2.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus f561421d04
gnu: r-affycontam: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.44.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus c2fa63e905
gnu: r-affycompatible: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.46.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus 5d87f12615
gnu: r-affycomp: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.62.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus be5e4e9615
gnu: r-biocgenerics: Update to 0.32.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.32.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus 2c8433ca0a
gnu: r-depecher: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.0.
[arguments]: Remove field.
[propagated-inputs]: Remove r-biocparallel; add r-fnn and r-robustbase.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus 7a62d5e0c2
gnu: Add r-cytoml. 
* gnu/packages/bioconductor.scm (r-cytoml): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus 6aedc80514
gnu: Add r-opencyto. 
* gnu/packages/bioconductor.scm (r-opencyto): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus b700b9ec21
gnu: Add r-flowstats. 
* gnu/packages/bioconductor.scm (r-flowstats): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus 82c1111745
gnu: Add r-flowworkspace. 
* gnu/packages/bioconductor.scm (r-flowworkspace): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus f1964519e7
gnu: Add r-rprotobuflib. 
* gnu/packages/bioconductor.scm (r-rprotobuflib): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus c8ab9eb1b4
gnu: Add r-flowclust. 
* gnu/packages/bioconductor.scm (r-flowclust): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus 0dd4b7d732
gnu: Add r-flowviz. 
* gnu/packages/bioconductor.scm (r-flowviz): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus f5f440312d
gnu: Add r-ggcyto. 
* gnu/packages/bioconductor.scm (r-ggcyto): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus 15ac0c195c
gnu: Add r-ncdfflow. 
* gnu/packages/bioconductor.scm (r-ncdfflow): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus b4aee31dcb
gnu: Add r-cytolib. 
* gnu/packages/bioconductor.scm (r-cytolib): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus b4a22ccaaa
gnu: Add r-multidataset. 
* gnu/packages/bioconductor.scm (r-multidataset): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus e5d722fb4c
gnu: Add r-biocversion. 
* gnu/packages/bioconductor.scm (r-biocversion): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus 8e6f63dd83
gnu: Add r-activepathways. 
* gnu/packages/bioconductor.scm (r-activepathways): New variable.
 2019-12-14 13:35:53 +01:00
Ricardo Wurmus 72b67e0b36
gnu: Add r-activedriverwgs. 
* gnu/packages/bioconductor.scm (r-activedriverwgs): New variable.
 2019-12-13 22:41:38 +01:00
Ricardo Wurmus bf770d9240
gnu: r-metap: Update to 1.2. 
* gnu/packages/cran.scm (r-metap): Move this from here...
* gnu/packages/bioconductor.scm (r-metap): ...to here and update to 1.2.
[propagated-inputs]: Add r-mutoss and r-tfisher.
 2019-12-09 18:11:20 +01:00
Ricardo Wurmus f21147625f
gnu: Add r-mutoss. 
* gnu/packages/bioconductor.scm (r-mutoss): New variable.
 2019-12-09 18:11:19 +01:00
Ricardo Wurmus 41728d234b
gnu: r-all: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-all)[source]: Use bioconductor-uri.
 2019-12-04 09:36:34 +01:00
Ricardo Wurmus 545e67ac03
gnu: r-hsmmsinglecell: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-hsmmsinglecell)[source]: Use
bioconductor-uri.
 2019-12-04 09:36:15 +01:00
Ricardo Wurmus b86f77469b
gnu: r-arrmdata: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-arrmdata)[source]: Use bioconductor-uri.
 2019-12-04 09:35:59 +01:00
Ricardo Wurmus ced61edf5d
gnu: r-abadata: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-abadata)[source]: Use bioconductor-uri.
 2019-12-04 09:35:44 +01:00
Ricardo Wurmus eed2766a45
gnu: r-do-db: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-do-db)[source]: Use bioconductor-uri.
 2019-12-04 09:35:26 +01:00
Ricardo Wurmus 25f567a85a
gnu: r-illuminahumanmethylationepicmanifest: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-illuminahumanmethylationepicmanifest)[source]:
Use bioconductor-uri.
 2019-12-04 09:35:08 +01:00
Ricardo Wurmus 6aca4054e0
gnu: r-fdb-infiniummethylation-hg19: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19)[source]: Use
bioconductor-uri.
 2019-12-04 09:34:47 +01:00
Ricardo Wurmus c271d99025
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
 2019-12-04 09:34:13 +01:00
Ricardo Wurmus 1afdf41b49
gnu: r-txdb-mmusculus-ucsc-mm9-knowngene: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene)[source]:
Use bioconductor-uri.
 2019-12-04 09:33:54 +01:00
Ricardo Wurmus d78db08862
gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene)[source]:
Use bioconductor-uri.
 2019-12-04 09:33:35 +01:00
Ricardo Wurmus f2580a1385
gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
 2019-12-04 09:33:09 +01:00
Ricardo Wurmus 717d7cda9d
gnu: r-genelendatabase: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-genelendatabase)[source]: Use
bioconductor-uri.
 2019-12-04 09:32:48 +01:00
Ricardo Wurmus e7a8cf2e6e
gnu: r-bsgenome-hsapiens-ucsc-hg19: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
 2019-12-04 09:32:22 +01:00
Ricardo Wurmus 411be88bf3
gnu: r-org-mm-eg-db: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-org-mm-eg-db)[source]: Use
bioconductor-uri.
 2019-12-04 09:32:03 +01:00
Ricardo Wurmus f53becc6d8
gnu: r-org-hs-eg-db: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-org-hs-eg-db)[source]: Use
bioconductor-uri.
 2019-12-04 09:31:46 +01:00
Ricardo Wurmus 7bb65a2227
gnu: r-org-dr-eg-db: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-org-dr-eg-db)[source]: Use
bioconductor-uri.
 2019-12-04 09:31:19 +01:00
Ricardo Wurmus b0dfc79b0d
gnu: r-org-dm-eg-db: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-org-dm-eg-db)[source]: Use
bioconductor-uri.
 2019-12-04 09:30:58 +01:00
Ricardo Wurmus 1c05e637a4
gnu: r-org-ce-eg-db: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-org-ce-eg-db)[source]: Use
bioconductor-uri.
 2019-12-04 09:30:35 +01:00
Ricardo Wurmus f83404bc5b
gnu: r-bsgenome-mmusculus-ucsc-mm10: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
 2019-12-04 09:29:56 +01:00
Ricardo Wurmus 51dc4a2d70
gnu: r-bsgenome-mmusculus-ucsc-mm9-masked: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked)[source]:
Use bioconductor-uri.
 2019-12-04 09:29:26 +01:00
Ricardo Wurmus 21f6dae73d
gnu: r-bsgenome-mmusculus-ucsc-mm9: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
 2019-12-04 09:28:54 +01:00
Ricardo Wurmus a47646bd05
gnu: r-bsgenome-hsapiens-ucsc-hg19-masked: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked)[source]:
Use bioconductor-uri.
 2019-12-04 09:28:34 +01:00
Ricardo Wurmus 88e7c7db59
gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-1000genomes-hs37d5)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
 2019-12-04 09:28:04 +01:00
Ricardo Wurmus bf05ece1a2
gnu: r-bsgenome-dmelanogaster-ucsc-dm3-masked: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3-masked)[source]:
Use bioconductor-uri.
 2019-12-04 09:27:15 +01:00
Ricardo Wurmus 87073b7ecb
gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
 2019-12-04 09:26:22 +01:00
Ricardo Wurmus 149f351f38
gnu: r-bsgenome-dmelanogaster-ucsc-dm6: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm6)[source]:
Use bioconductor-uri.
[arguments]: Permit substitution.
 2019-12-04 09:25:10 +01:00
Ricardo Wurmus 6998ecba74
gnu: r-bsgenome-celegans-ucsc-ce10: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10)[source]: Use
bioconductor-uri.
[arguments]: Permit substitution.
 2019-12-04 09:24:09 +01:00
Vagrant Cascadian b5b0ee3bd0
gnu: r-unifiedwmwqpcr: Fix typo in description. 
* gnu/packages/bioconductor (r-unifiedwmwqpcr)[description]: Fix typo.
 2019-11-11 19:02:45 -08:00
Ricardo Wurmus ca2b1dcfcd
gnu: r-xcms: Update to 3.6.2. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.6.2.
 2019-10-21 18:23:07 +02:00
Ricardo Wurmus b9f39ac986
gnu: r-mlinterfaces: Update to 1.64.1. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.64.1.
 2019-10-18 20:35:26 +02:00
zimoun 86fb2c63be
gnu: Add r-unifiedwmwqpcr. 
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-10-15 14:10:27 +02:00
zimoun 16e2e4f27b
gnu: Add r-htqpcr. 
* gnu/packages/bioconductor.scm (r-htqpcr): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-10-15 14:10:21 +02:00
Ricardo Wurmus 40be965e28
gnu: Add r-phastcons100way-ucsc-hg19. 
* gnu/packages/bioconductor.scm (r-phastcons100way-ucsc-hg19): New variable.
 2019-10-14 18:09:37 +02:00
Ricardo Wurmus 326746e14c
gnu: r-variancepartition: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.14.1.
[propagated-inputs]: Add r-biocparallel.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus eb796f53ef
gnu: r-mixomics: Update to 6.8.5. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.5.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus 1c2e573302
gnu: r-regioner: Update to 1.16.5. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.5.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus d80a15696b
gnu: Add r-variancepartition. 
* gnu/packages/bioconductor.scm (r-variancepartition): New variable.
 2019-09-15 22:57:47 +02:00
Ricardo Wurmus 2a360cf6ac
gnu: Add r-wavetiling. 
* gnu/packages/bioconductor.scm (r-wavetiling): New variable.
 2019-09-15 22:54:21 +02:00
Ricardo Wurmus f5349b4d5a
gnu: Add r-genomegraphs. 
* gnu/packages/bioconductor.scm (r-genomegraphs): New variable.
 2019-09-15 22:51:52 +02:00
Ricardo Wurmus 4c63eeb8a4
gnu: Add r-oligo. 
* gnu/packages/bioconductor.scm (r-oligo): New variable.
 2019-09-15 22:50:31 +02:00
Ricardo Wurmus d6a5d9b24f
gnu: Add r-affxparser. 
* gnu/packages/bioconductor.scm (r-affxparser): New variable.
 2019-09-15 22:50:25 +02:00
Ricardo Wurmus df8576e5c9
gnu: Add r-variantfiltering. 
* gnu/packages/bioconductor.scm (r-variantfiltering): New variable.
 2019-09-15 22:41:03 +02:00
Ricardo Wurmus bb0024dc69
gnu: Add r-reqon. 
* gnu/packages/bioconductor.scm (r-reqon): New variable.
 2019-09-15 21:07:57 +02:00
Ricardo Wurmus e5dfcd8e26
gnu: Add r-seqbias. 
* gnu/packages/bioconductor.scm (r-seqbias): New variable.
 2019-09-15 21:07:56 +02:00
Ricardo Wurmus 12105c6c3a
gnu: Add r-affycoretools. 
* gnu/packages/bioconductor.scm (r-affycoretools): New variable.
 2019-09-15 20:58:26 +02:00
Ricardo Wurmus 01c7ba9982
gnu: Add r-oligoclasses. 
* gnu/packages/bioconductor.scm (r-oligoclasses): New variable.
 2019-09-15 20:58:26 +02:00
Ricardo Wurmus 15184fb386
gnu: Add r-reportingtools. 
* gnu/packages/bioconductor.scm (r-reportingtools): New variable.
 2019-09-15 20:58:25 +02:00
Ricardo Wurmus 83b4209122
gnu: Add r-pfam-db. 
* gnu/packages/bioconductor.scm (r-pfam-db): New variable.
 2019-09-15 20:57:26 +02:00
Ricardo Wurmus 4ca2d6c1a6
gnu: Add r-affycontam. 
* gnu/packages/bioconductor.scm (r-affycontam): New variable.
 2019-09-15 20:53:27 +02:00
Ricardo Wurmus 5094aa9472
gnu: Add r-affycompatible. 
* gnu/packages/bioconductor.scm (r-affycompatible): New variable.
 2019-09-15 20:53:21 +02:00
Ricardo Wurmus 5cf940de21
gnu: Add r-affycomp. 
* gnu/packages/bioconductor.scm (r-affycomp): New variable.
 2019-09-15 20:53:14 +02:00
Ricardo Wurmus 53b1e10f23
gnu: Add r-affydata. 
* gnu/packages/bioconductor.scm (r-affydata): New variable.
 2019-09-15 20:53:01 +02:00
Ricardo Wurmus 853211a51b
gnu: Add r-timeseriesexperiment. 
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): New variable.
 2019-09-15 20:42:41 +02:00
Ricardo Wurmus 739b2d10f0
gnu: Add r-wavcluster. 
* gnu/packages/bioconductor.scm (r-wavcluster): New variable.
 2019-09-15 20:41:01 +02:00
Ricardo Wurmus 11f973e093
gnu: r-mixomics: Update to 6.8.4. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.4.
 2019-09-14 23:39:03 +02:00
Ricardo Wurmus f8fb5b75c9
gnu: r-gtrellis: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.16.1.
 2019-09-14 23:38:58 +02:00
Ricardo Wurmus ec0270b1e9
gnu: r-regioner: Update to 1.16.4. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.4.
 2019-09-14 23:38:51 +02:00
Ricardo Wurmus 412153bbaf
gnu: r-bsgenome-celegans-ucsc-ce6: Permit substitution. 
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6)[arguments]:
Remove field.
 2019-09-11 23:59:28 +02:00
Ricardo Wurmus 86ced7b271
gnu: r-bsgenome-celegans-ucsc-ce6: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6)[source]: Use
BIOCONDUCTOR-URI.
 2019-09-11 23:58:52 +02:00
Ricardo Wurmus f791b1eecc
gnu: r-rsubread: Update to 1.34.7. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 1.34.7.
 2019-09-08 00:30:33 +02:00
Ricardo Wurmus a39222d7e2
gnu: r-regioner: Update to 1.16.3. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.3.
 2019-09-08 00:30:33 +02:00
Ricardo Wurmus 7cd446fd3f
gnu: Add r-txdb-celegans-ucsc-ce6-ensgene. 
* gnu/packages/bioconductor.scm (r-txdb-celegans-ucsc-ce6-ensgene): New
variable.
 2019-09-06 15:00:49 +02:00
Ricardo Wurmus 6b5f59c7a6
gnu: Add r-bigmelon. 
* gnu/packages/bioconductor.scm (r-bigmelon): New variable.
 2019-09-05 11:46:29 +02:00
Ricardo Wurmus 7d2cb646f7
gnu: Add r-gdsfmt. 
* gnu/packages/bioconductor.scm (r-gdsfmt): New variable.
 2019-09-05 11:46:29 +02:00
Ricardo Wurmus 38babeaaa4
gnu: Add r-watermelon. 
* gnu/packages/bioconductor.scm (r-watermelon): New variable.
 2019-09-05 11:46:29 +02:00
Ricardo Wurmus 46721deaf8
gnu: Add r-illuminahumanmethylation450kanno-ilmn12-hg19. 
* gnu/packages/bioconductor.scm
(r-illuminahumanmethylation450kanno-ilmn12-hg19): New variable.
 2019-09-05 11:46:29 +02:00
Ricardo Wurmus db316d7376
gnu: Add r-roc. 
* gnu/packages/bioconductor.scm (r-roc): New variable.
 2019-09-05 11:46:29 +02:00
Ricardo Wurmus b58b4410e2
gnu: r-mixomics: Update to 6.8.2. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.2.
 2019-09-02 14:40:56 +02:00
Ricardo Wurmus 9b275285e9
gnu: r-fgsea: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.10.1.
 2019-09-02 14:40:56 +02:00
Ricardo Wurmus 8324e64cd5
gnu: Add r-ensdb-hsapiens-v75. 
* gnu/packages/bioconductor.scm (r-ensdb-hsapiens-v75): New variable.
 2019-09-02 14:40:54 +02:00
Robert Vollmert dddbc90c64
gnu: Move non-compilers out of haskell.scm. 
* gnu/packages/haskell.scm (ghc-abstract-deque, ghc-abstract-par,
ghc-adjunctions, ghc-aeson-compat, ghc-alex, ghc-alsa-core,
ghc-annotated-wl-pprint, ghc-ansi-terminal, ghc-ansi-wl-pprint,
ghc-appar, ghc-async, ghc-atomic-write, ghc-attoparsec,
ghc-attoparsec-bootstrap, ghc-attoparsec-iso8601, ghc-auto-update,
ghc-aws, ghc-base16-bytestring, ghc-base64-bytestring, ghc-base-compat,
ghc-basement, ghc-base-orphans, ghc-base-prelude,
ghc-base-unicode-symbols, ghc-bifunctors, ghc-bindings-dsl,
ghc-blaze-builder, ghc-blaze-markup, ghc-bloomfilter, ghc-boxes,
ghc-byteable, ghc-byteorder, ghc-bytes, ghc-bytestring-builder,
ghc-bytestring-handle, ghc-bytestring-lexing, ghc-bzlib-conduit,
ghc-c2hs, ghc-cairo, ghc-call-stack, ghc-call-stack-boot,
ghc-case-insensitive, ghc-cereal, ghc-cereal-conduit, ghc-cgi,
ghc-charset, ghc-chart, ghc-chart-cairo, ghc-chasingbottoms,
ghc-cheapskate, ghc-chell, ghc-chell-quickcheck, ghc-chunked-data,
ghc-clock, ghc-clock-bootstrap, ghc-cmark, ghc-cmark-gfm, ghc-cmdargs,
ghc-code-page, ghc-colour, ghc-comonad, ghc-concatenative,
ghc-concurrent-output, ghc-conduit, ghc-conduit-algorithms,
ghc-conduit-combinators, ghc-conduit-extra, ghc-configurator,
ghc-connection, ghc-constraints, ghc-contravariant,
ghc-contravariant-extras, ghc-convertible, ghc-data-accessor,
ghc-data-accessor-transformers, ghc-data-default,
ghc-data-default-class, ghc-data-default-instances-base,
ghc-data-default-instances-containers, ghc-data-default-instances-dlist,
ghc-data-default-instances-old-locale, ghc-data-hash, ghc-data-ordlist,
ghc-deepseq-generics, ghc-descriptive, ghc-diff, ghc-disk-free-space,
ghc-distributive, ghc-dlist, ghc-doctemplates, ghc-doctest,
ghc-double-conversion, ghc-easy-file, ghc-easyplot, ghc-echo,
ghc-edisonapi, ghc-edisoncore, ghc-edit-distance, ghc-either,
ghc-email-validate, ghc-enclosed-exceptions, ghc-equivalence, ghc-erf,
ghc-errorcall-eq-instance, ghc-errors, ghc-esqueleto, ghc-exactprint,
ghc-exceptions, ghc-executable-path, ghc-extensible-exceptions,
ghc-extra, ghc-fail, ghc-fast-logger, ghc-feed, ghc-fgl,
ghc-fgl-arbitrary, ghc-file-embed, ghc-filemanip, ghc-findbin,
ghc-fingertree, ghc-fixed, ghc-foldl, ghc-foundation, ghc-free,
ghc-fsnotify, ghc-generic-deriving, ghc-generics-sop,
ghc-geniplate-mirror, ghc-genvalidity, ghc-genvalidity-property,
ghc-gitrev, ghc-glob, ghc-gluraw, ghc-glut, ghc-gnuplot, ghc-graphviz,
ghc-gtk2hs-buildtools, ghc-hackage-security, ghc-haddock,
ghc-haddock-api, ghc-haddock-library, ghc-half, ghc-happy, ghc-hashable,
ghc-hashable-bootstrap, ghc-hashable-time, ghc-hashtables,
ghc-haskell-lexer, ghc-haskell-src, ghc-haskell-src-exts,
ghc-haskell-src-exts-util, ghc-haskell-src-meta, ghc-hasktags, ghc-hex,
ghc-highlighting-kate, ghc-hindent, ghc-hinotify, ghc-hmatrix,
ghc-hmatrix-gsl, ghc-hmatrix-gsl-stats, ghc-hmatrix-special,
ghc-hostname, ghc-hourglass, ghc-hpack, ghc-hs-bibutils, ghc-hslogger,
ghc-hslua, ghc-hslua-module-text, ghc-http-api-data, ghc-ieee754,
ghc-ifelse, ghc-indents, ghc-inline-c, ghc-inline-c-cpp,
ghc-integer-logarithms, ghc-integer-logarithms-bootstrap,
ghc-interpolate, ghc-intervalmap, ghc-invariant, ghc-iproute, ghc-iwlib,
ghc-json, ghc-juicypixels, ghc-kan-extensions, ghc-language-c,
ghc-language-haskell-extract, ghc-lens, ghc-libffi, ghc-libmpd,
ghc-libxml, ghc-lifted-async, ghc-lifted-base, ghc-linear,
ghc-logging-facade, ghc-logict, ghc-lzma, ghc-lzma-conduit,
ghc-markdown-unlit, ghc-math-functions, ghc-megaparsec, ghc-memory,
ghc-memotrie, ghc-microlens, ghc-microlens-ghc, ghc-microlens-mtl,
ghc-microlens-platform, ghc-microlens-th, ghc-missingh, ghc-mmap,
ghc-mmorph, ghc-mockery, ghc-monad-control, ghc-monad-logger,
ghc-monad-loops, ghc-monad-par, ghc-monad-par-extras, ghc-monadplus,
ghc-monadrandom, ghc-monads-tf, ghc-mono-traversable, ghc-murmur-hash,
ghc-mwc-random, ghc-nats, ghc-nats-bootstrap, ghc-network,
ghc-network-info, ghc-network-uri, ghc-newtype-generics, ghc-objectname,
ghc-old-locale, ghc-old-time, ghc-opengl, ghc-openglraw,
ghc-operational, ghc-options, ghc-optparse-applicative, ghc-pandoc,
ghc-pandoc-citeproc, ghc-pandoc-types, ghc-parallel, ghc-parsec-numbers,
ghc-parser-combinators, ghc-parsers, ghc-path, ghc-path-io, ghc-paths,
ghc-patience, ghc-pcre-light, ghc-persistent, ghc-persistent-sqlite,
ghc-persistent-template, ghc-polyparse, ghc-pqueue, ghc-prelude-extras,
ghc-pretty-hex, ghc-pretty-show, ghc-primitive, ghc-profunctors,
ghc-psqueues, ghc-random, ghc-raw-strings-qq, ghc-rebase, ghc-reducers,
ghc-refact, ghc-reflection, ghc-regex, ghc-regex-applicative,
ghc-regex-base, ghc-regex-compat, ghc-regex-compat-tdfa,
ghc-regex-pcre-builtin, ghc-regex-posix, ghc-regex-tdfa,
ghc-regex-tdfa-text, ghc-rerebase, ghc-resolv, ghc-resource-pool,
ghc-resourcet, ghc-rfc5051, ghc-rio, ghc-safe, ghc-safe-exceptions,
ghc-safeio, ghc-safesemaphore, ghc-sandi, ghc-scientific,
ghc-scientific-bootstrap, ghc-sdl, ghc-sdl-image, ghc-sdl-mixer,
ghc-securemem, ghc-semigroupoids, ghc-semigroups,
ghc-semigroups-bootstrap, ghc-setenv, ghc-setlocale, ghc-shakespeare,
ghc-shelly, ghc-silently, ghc-simple-reflect, ghc-simple-sendfile,
ghc-skylighting-core, ghc-skylighting, ghc-smallcheck, ghc-socks,
ghc-split, ghc-statevar, ghc-statistics, ghc-stm-chans, ghc-stm-conduit,
ghc-stmonadtrans, ghc-storable-complex, ghc-streaming-commons,
ghc-strict, ghc-stringbuilder, ghc-string-qq, ghc-stringsearch,
ghc-stylish-haskell, ghc-syb, ghc-system-fileio, ghc-system-filepath,
ghc-tagged, ghc-tar, ghc-temporary, ghc-temporary-rc, ghc-terminal-size,
ghc-texmath, ghc-text-binary, ghc-tf-random, ghc-th-abstraction,
ghc-th-expand-syns, ghc-th-lift, ghc-th-lift-instances, ghc-th-orphans,
ghc-th-reify-many, ghc-time-locale-compat, ghc-tldr,
ghc-transformers-base, ghc-transformers-compat, ghc-tree-diff,
ghc-trifecta, ghc-tuple-th, ghc-typed-process, ghc-unbounded-delays,
ghc-unexceptionalio, ghc-union-find, ghc-uniplate, ghc-unix-compat,
ghc-unix-time, ghc-unliftio, ghc-unliftio-core,
ghc-unordered-containers, ghc-unordered-containers-bootstrap,
ghc-uri-bytestring, ghc-utf8-string, ghc-utility-ht, ghc-uuid,
ghc-uuid-types, ghc-validation, ghc-validity, ghc-vault, ghc-vector,
ghc-vector-algorithms, ghc-vector-binary-instances, ghc-vector-builder,
ghc-vector-th-unbox, ghc-void, ghc-wave, ghc-wcwidth,
ghc-wcwidth-bootstrap, ghc-weigh, ghc-wl-pprint,
ghc-wl-pprint-annotated, ghc-wl-pprint-text, ghc-word8, ghc-x11,
ghc-x11-xft, ghc-xdg-basedir, ghc-xml, ghc-xml-conduit, ghc-xml-types,
ghc-yaml, ghc-zip-archive, ghc-zlib): Move variables from here...
* gnu/packages/haskell-xyz.scm: ...to here.
* gnu/packages/agda.scm,
gnu/packages/bioconductor.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/cran.scm,
gnu/packages/emacs-xyz.scm,
gnu/packages/games.scm,
gnu/packages/graphics.scm,
gnu/packages/haskell-apps.scm,
gnu/packages/haskell-check.scm,
gnu/packages/idris.scm,
gnu/packages/statistics.scm,
gnu/packages/wm.scm: Update module references.

Co-authored-by: Timothy Sample <samplet@ngyro.com>
 2019-08-31 09:25:49 -04:00
Ricardo Wurmus d85c0f9842
gnu: Add r-genie3. 
* gnu/packages/bioconductor.scm (r-genie3): New variable.
 2019-08-30 22:42:50 +02:00
Ricardo Wurmus a9815a6cf2
gnu: Add r-cistopic. 
* gnu/packages/bioconductor.scm (r-cistopic): New variable.
 2019-08-15 17:44:25 +02:00
Ricardo Wurmus bb88417fb7
gnu: Add r-rcistarget. 
* gnu/packages/bioconductor.scm (r-rcistarget): New variable.
 2019-08-15 17:44:25 +02:00
Ricardo Wurmus b120789193
gnu: r-rsubread: Update to 1.34.6. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 1.34.6.
 2019-08-06 15:49:00 +02:00
Ricardo Wurmus d6158ecb3b
gnu: r-abaenrichment: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.14.1.
 2019-08-06 15:49:00 +02:00
Ricardo Wurmus fbe5a0872f
gnu: r-atacseqqc: Update to 1.8.5. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.5.
 2019-08-06 15:49:00 +02:00
Ricardo Wurmus fcbd8960c2
gnu: r-genomicinteractions: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.18.1.
 2019-08-06 15:49:00 +02:00
Ricardo Wurmus 109b8ad5f9
gnu: r-chippeakanno: Update to 3.18.2. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.2.
 2019-08-06 15:49:00 +02:00
Ricardo Wurmus 14bb1c4842
gnu: Add r-cicero-monocle3. 
* gnu/packages/bioconductor.scm (r-cicero-monocle3): New variable.
 2019-07-31 19:01:22 +02:00
Ricardo Wurmus b2dce6b5a2
gnu: Add r-monocle3. 
* gnu/packages/bioconductor.scm (r-monocle3): New variable.
 2019-07-30 15:52:48 +02:00
Ricardo Wurmus b46a0ee753
gnu: Add r-cicero. 
* gnu/packages/bioconductor.scm (r-cicero): New variable.
 2019-07-30 15:22:40 +02:00
zimoun a0efa069a1
gnu: Add r-depecher. 
* gnu/packages/bioconductor.scm (r-depecher): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-07-24 23:05:39 +02:00
zimoun 1adb9cbc5e
gnu: Add r-mixomics. 
* gnu/packages/bioconductor.scm (r-mixomics): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-07-24 23:05:39 +02:00
zimoun 1502751b32
gnu: Add r-flowsom. 
* gnu/packages/bioconductor.scm (r-flowsom): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-07-24 23:05:39 +02:00
zimoun e0cb053edb
gnu: Add r-flowmeans. 
* gnu/packages/bioconductor.scm (r-flowmeans): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-07-24 23:05:39 +02:00
zimoun ed6f49fc41
gnu: Add r-consensusclusterplus. 
* gnu/packages/bioconductor.scm (r-consensusclusterplus): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-07-24 23:05:39 +02:00
zimoun a0422d18f1
gnu: Add r-flowutils. 
* gnu/packages/bioconductor.scm (r-flowutils): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-07-24 23:05:39 +02:00
zimoun a6fedf1f37
gnu: Add r-flowcore. 
* gnu/packages/bioconductor.scm (r-flowcore): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-07-24 23:05:39 +02:00
zimoun ad8f46c69e
gnu: Add r-all. 
* gnu/packages/bioconductor.scm (r-all): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-07-24 23:05:39 +02:00