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Author SHA1 Message Date
Tim Howes 80cd6a1b63
gnu: Add r-gsa.
* gnu/packages/cran.scm (r-gsa): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-03-26 10:08:12 +01:00
zimoun ac7250f8ba
gnu: r-suppdists: Update hash.
* gnu/packages/cran.scm (r-suppdists)[source]: Update hash.
2021-03-26 09:57:33 +01:00
Leo Famulari 6665f0fa58
gnu: SVT-HEVC: Update to 1.5.0.
* gnu/packages/video.scm (svt-hevc): Update to 1.5.0.
[license]: Specify the license.
2021-03-26 04:05:05 -04:00
Leo Famulari f0357df8c5
gnu: SVT-AV1: Update URLs.
* gnu/packages/video.scm (svt-av1)[source, home-page]: Update URLs.
2021-03-26 04:05:05 -04:00
Leo Famulari 4c56620555
gnu: libaom: Update to 3.0.0.
* gnu/packages/video.scm (libaom): Update to 3.0.0.
2021-03-26 04:05:05 -04:00
Léo Le Bouter f21075f039
gnu: guix: Update to 6e7ba45.
* gnu/packages/package-management.scm (guix): Update to 6e7ba45.
2021-03-26 05:42:48 +01:00
Léo Le Bouter 6e7ba45357
gnu: sqlite: Update to 3.32.3 [security fixes].
Fixes CVE-2020-11655, CVE-2020-11656, CVE-2020-13434, CVE-2020-13435,
CVE-2020-13630, CVE-2020-13631, CVE-2020-13632, CVE-2020-15358 and
CVE-2020-9327.

* gnu/packages/sqlite.scm (sqlite/fixed): New variable.
(sqlite)[replacement]: Graft.
2021-03-26 02:29:19 +01:00
Léo Le Bouter 52c8d07a4f
gnu: mariadb: Fix CVE-2021-27928.
* gnu/packages/patches/mariadb-CVE-2021-27928.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/databases.scm (mariadb/fixed): New variable. Apply patch.
(mariadb)[replacement]: Graft.
2021-03-26 02:21:51 +01:00
Leo Famulari a801c7379a
gnu: Remove QT 4.
For more information, see:

https://lists.gnu.org/archive/html/guix-devel/2016-02/msg00596.html
https://bugs.gnu.org/45704

* gnu/packages/qt.scm (qt-4, python2-pyqt-4): Remove variables.
* gnu/packages/engineering.scm (qucs, qucs-s): Remove variables.
* gnu/packages/messaging.scm (pybitmessage): Remove variable.
* gnu/packages/password-utils.scm (keepassx): Remove variable.
* gnu/packages/pdf.scm (poppler-qt4): Remove variable.
2021-03-25 19:19:42 -04:00
Leo Famulari bc8554ecb1
gnu: ircii: Update to 20210314 [security fixes].
See this message for more information about the security issues fixed in
ircii 20210314:

https://seclists.org/oss-sec/2021/q1/262

* gnu/packages/irc.scm (ircii): Update to 20210314.
2021-03-25 18:57:27 -04:00
Leo Famulari 6205f95217
gnu: linux-libre 5.10: Update to 5.10.26.
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.26.
(linux-libre-5.10-pristine-source): Update hash.
2021-03-25 17:22:06 -04:00
Leo Famulari 52e1bab6cf
gnu: linux-libre: Update to 5.11.10.
* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.10.
(linux-libre-5.11-pristine-source): Update hash.
2021-03-25 17:21:57 -04:00
Tobias Geerinckx-Rice cc33f50d0e
gnu: vips: Update to 8.10.6.
* gnu/packages/image-processing.scm (vips): Update to 8.10.6.
2021-03-25 21:07:39 +01:00
Tobias Geerinckx-Rice 43f82eecf5
gnu: spdlog: Update to 1.8.3.
* gnu/packages/logging.scm (spdlog): Update to 1.8.3.
2021-03-25 21:05:01 +01:00
Tobias Geerinckx-Rice a4739f3742
gnu: youtube-dl: Update to 2021.03.25.
* gnu/packages/video.scm (youtube-dl): Update to 2021.03.25.
2021-03-25 21:04:40 +01:00
Tobias Geerinckx-Rice 6bce6469b9
gnu: wla-dx: Update to 9.12.
* gnu/packages/assembly.scm (wla-dx): Update to 9.12.
2021-03-25 21:04:22 +01:00
Tobias Geerinckx-Rice 23f964a62c
gnu: doctest: Update to 2.4.6.
* gnu/packages/check.scm (doctest): Update to 2.4.6.
2021-03-25 21:04:07 +01:00
Tobias Geerinckx-Rice 846a6aadd6
gnu: libinstpatch: Update to 1.1.6.
* gnu/packages/audio.scm (libinstpatch): Update to 1.1.6.
2021-03-25 21:03:55 +01:00
Tobias Geerinckx-Rice f5ef08c437
gnu: emacs: Update to 27.2.
* gnu/packages/emacs.scm (emacs): Update to 27.2.
2021-03-25 21:03:39 +01:00
Mathieu Othacehe ac29d37e2f
gnu: cuirass: Update to 1.0.0-3.f5a2eea.
* gnu/packages/ci.scm (cuirass): Update to 1.0.0-3.f5a2eea.
2021-03-25 18:35:50 +01:00
Benoit Joly af3bf6b481
gnu: Add go-gitlab.com-shackra-goimapnotify.
* gnu/packages/mail.scm (go-gitlab.com-shackra-goimapnotify): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2021-03-25 17:21:22 +00:00
Rafa Gálvez 0098fcecf0
gnu: synapse: Update to 1.29.0.
* gnu/packages/matrix.scm (synapse): Update to 1.29.0.
2021-03-25 16:59:01 +00:00
Vincent Legoll a172def55a
gnu: gcc: Fix comment about gfortran.
Added by: cb4805e34c
Fixes: 0681f05486

* gnu/packages/gcc.scm (gcc): Fix comment about gfortran.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2021-03-25 16:59:01 +00:00
Léo Le Bouter 10cbf042e1
gnu: openssl: Update to 1.1.1k [security fixes].
Fixes CVE-2021-3450 and CVE-2021-3449.

* gnu/packages/tls.scm (openssl/fixed): Update to 1.1.1k.
2021-03-25 17:53:53 +01:00
Michael Rohleder 3f1b2bd322
gnu: xfce4-netload-plugin: Update to 1.4.0.
* gnu/packages/xfce.scm (xfce4-netload-plugin): Update to 1.4.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-25 12:56:00 +02:00
Michael Rohleder d8235685d8
gnu: exo: Update to 4.16.1.
* gnu/packages/xfce.scm (exo): Update to 4.16.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-25 12:55:58 +02:00
Michael Rohleder be27d36640
gnu: thunar: Update to 4.16.6.
* gnu/packages/xfce.scm (thunar): Update to 4.16.6.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-25 12:55:56 +02:00
Michael Rohleder 71ee5a640d
gnu: xfce4-systemload-plugin: Update to 1.3.1.
* gnu/packages/xfce.scm (xfce4-systemload-plugin): Update to 1.3.1.
[inputs]: Add libgtop.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-25 12:55:54 +02:00
Michael Rohleder 6b3b72fb60
gnu: xfce4-battery-plugin: Update to 1.1.4.
* gnu/packages/xfce.scm (xfce4-battery-plugin): Update to 1.1.4.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-25 12:55:22 +02:00
Pierre Neidhardt 8ee6bb91c1
gnu: Add quickproject.
* gnu/packages/lisp-xyz.scm (cl-quickproject, ecl-quickproject,
sbcl-quickproject): New variables.
2021-03-25 10:36:05 +01:00
Pierre Neidhardt f445407df6
gnu: Add html-template.
* gnu/packages/lisp-xyz.scm (cl-html-template, ecl-html-template,
sbcl-html-template): New variables.
2021-03-25 10:35:55 +01:00
Léo Le Bouter 27d967dfa4
Revert "gnu: guix: Update to 86dd54f."
A test failure (tests/print) was uncovered so revert until we fix it.

This reverts commit b0eb525ddb.
2021-03-25 02:31:42 +01:00
Leo Famulari da00a3a477
gnu: linux-libre 4.4: Update to 4.4.263.
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.263.
(linux-libre-4.4-pristine-source): Update hash.
2021-03-24 20:32:36 -04:00
Leo Famulari a802989ce8
gnu: linux-libre 4.9: Update to 4.9.263.
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.263.
(linux-libre-4.9-pristine-source): Update hash.
2021-03-24 20:32:36 -04:00
Leo Famulari 153bc03830
gnu: linux-libre 4.14: Update to 4.14.227.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.227.
(linux-libre-4.14-pristine-source): Update hash.
2021-03-24 20:32:36 -04:00
Leo Famulari e5918b8c5e
gnu: linux-libre 4.19: Update to 4.19.183.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.183.
(linux-libre-4.19-pristine-source): Update hash.
2021-03-24 20:32:36 -04:00
Leo Famulari 1daef9052f
gnu: linux-libre 5.4: Update to 5.4.108.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.108.
(linux-libre-5.4-pristine-source): Update hash.
2021-03-24 20:32:35 -04:00
Leo Famulari 4dc13760c2
gnu: linux-libre: Update to 5.11.9.
* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.9.
(linux-libre-5.11-pristine-source): Update hash.
2021-03-24 20:32:35 -04:00
Léo Le Bouter b0eb525ddb
gnu: guix: Update to 86dd54f.
* gnu/packages/package-management.scm (guix): Update to 86dd54f.
2021-03-25 00:06:55 +01:00
Vinicius Monego 86dd54f230
gnu: Add gsequencer.
* gnu/packages/music.scm (gsequencer): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-24 23:24:07 +01:00
Vinicius Monego ab170124a3
gnu: Add drawing.
* gnu/packages/gnome.scm (drawing): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-24 22:35:16 +01:00
Stefan Reichör c420cec69b
gnu: emacs-git-gutter: Update to 0.91.
* gnu/packages/emacs-xyz.scm (emacs-git-gutter): Update to 0.91.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-24 22:31:50 +01:00
Stefan Reichör 92d231847a
gnu: Add emacs-vterm-toggle.
* gnu/packages/emacs-xyz.scm (emacs-vterm-toggle): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-24 22:25:01 +01:00
Nicolas Goaziou 534bcb6b28
gnu: r-textshape: Use HTTPS home page URI.
* gnu/packages/cran.scm (r-textshape)[home-page]: Use HTTPS URI.
2021-03-24 21:09:19 +01:00
Efraim Flashner 650bb580df
gnu: ddrescue: Support cross compiling.
* gnu/packages/disk.scm (ddrescue)[arguments]: Add configure-flag to
fix cross compiling.
2021-03-24 21:07:59 +02:00
Mathieu Othacehe 03bf951f70
gnu: guile-mastodon-dev: Remove it.
* gnu/packages/ci.scm (guile-mastodon-dev): Remove it.
(cuirass): Update it.
2021-03-24 19:26:00 +01:00
Mathieu Othacehe d999fc689e
gnu: guile-mastodon: Update to 0.0.1-1.74b75bc.
* gnu/packages/guile-xyz.scm (guile-mastodon): Update to 0.0.1-1.74b75bc.
[source]: Remove Guile-3.0 snippet since this new release brings Guile-3.0
support.
2021-03-24 19:22:43 +01:00
Lars-Dominik Braun 55685e45be
gnu: Add python-pylibacl.
* gnu/packages/acl.scm (python-pylibacl): New variable.
2021-03-24 14:24:55 +01:00
Greg Hogan 3f944e6204
gnu: ccache: Update to 4.2.
* gnu/packages/ccache.scm (ccache): Update to 4.2.
[build-system]: Switch to cmake-build-system.
[inputs]: Add zstd:lib.
[arguments]: Move substitution before change of directory and add phase
to set HOME variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-24 14:29:39 +02:00
Guillaume Le Vaillant da80d4e6a7
gnu: gqrx: Add missing input.
* gnu/packages/radio.scm (gqrx)[inputs]: Add libsndfile.
2021-03-24 12:00:46 +01:00
Guillaume Le Vaillant f1df119224
gnu: gnuradio-osmosdr: Update to 0.2.3-0.a100eb0.
* gnu/packages/radio.scm (gnuradio-osmosdr): Update to 0.2.3-0.a100eb0.
  [native-inputs]: Replace swig by pybind11.
  [inputs]: Add libsndfile.
2021-03-24 11:56:32 +01:00
Guillaume Le Vaillant 50e33007a5
gnu: gnuradio-iqbalance: Update to 0.38.2-0.fbee239.
* gnu/packages/radio.scm (gnuradio-iqbalance): Update to 0.38.2-0.fbee239.
  [native-inputs]: Replace swig by pybind11.
2021-03-24 11:54:03 +01:00
Guillaume Le Vaillant d3e7f1eeac
gnu: gnuradio: Add missing inputs.
* gnu/packages/radio.scm (gnuradio)[native-inputs]: Add js-mathjax.
  [inputs]: Add libsndfile.
  [arguments]: Add 'configure-flags' to find mathjax.
2021-03-24 11:54:03 +01:00
João Pedro Simas 083809229b
gnu: gnuradio: Update to 3.9.0.0.
* gnu/packages/radio.scm (gnuradio): Update to 3.9.0.0.
  [source]: Remove snippet deleting the included copy of volk,
  as it is not included anymore.
  [native-inputs]: Replace swig with pybind11.
  [inputs]: Add sdl (for dtv).
  [arguments]: Remove 'configure-flags". Disable broken tests.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-03-24 10:00:03 +01:00
Chris Marusich 65c46e79e0
gnu: sed: Make it build on SELinux-enabled kernels.
Fixes: <https://bugs.gnu.org/41498>.

* gnu/packages/base.scm (sed)[arguments]: New field.  This adds a
snippet, equivalent to the patch submitted upstream, which fixes an
issue that prevents sed from building on SELinux-enabled kernels.

Adjusted by Efraim Flashner to apply to master.
2021-03-23 23:19:58 -07:00
Chris Marusich 8d9aece8c4
ci: %cross-targets: Add powerpc64le-linux-gnu.
* gnu/ci.scm (%cross-targets): Add an entry for powerpc64le-linux-gnu.
2021-03-23 23:19:58 -07:00
Leo Le Bouter b50f426803
gnu: libelf: Fix compilation for powerpc64le-linux.
* gnu/packages/elf.scm (libelf)[arguments]: Modify replacement 'configure phase
to invoke "./configure" with "--host=powerpc64le-unknown-linux-gnu" on
powerpc64le-linux.

Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
2021-03-23 23:19:57 -07:00
Leo Le Bouter 1a0f4013d3
gnu: texlive-latex-base: Fix compilation on powerpc64le*.
* gnu/packages/tex.scm (texlive-latex-base)[arguments]: LuaJIT is not ported to
powerpc64le* yet. Update replacement 'build phase to add "luajittex" within the
"disabled-formats" list on powerpc64le*.

Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
2021-03-23 23:19:57 -07:00
Leo Le Bouter e9938dc8f0
gnu: texlive-bin: Fix compilation on powerpc64le*.
* gnu/packages/tex.scm (texlive-bin)[arguments]: Append "--disable-luajittex"
and "--disable-mfluajit" to keyword argument "#:configure-flags" on
powerpc64le* because LuaJIT is not ported to powerpc64le* yet. Also set
"#:tests?" to "#f" on powerpc64le*.

Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
2021-03-23 23:19:57 -07:00
Leo Le Bouter 69b3907adf
gnu: guile-avahi: Fix compilation on powerpc64le-linux.
* gnu/packages/guile-xyz.scm (guile-avahi)[arguments]: Parallel builds fail on
powerpc64le-linux. Set "#:parallel-build?" to "#f".

Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
2021-03-23 23:19:56 -07:00
Leo Le Bouter 4cc2d2aa59
gnu: bdb-4.8: Fix configure on powerpc64le-linux.
* gnu/packages/dbm.scm (bdb-4.8)[arguments]: Modify 'configure phase to append
"--build=powerpc64le-unknown-linux-gnu" to configure's flags when compiling for
powerpc64le-linux.

Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
2021-03-23 23:19:56 -07:00
Chris Marusich be4b1cf53b
gnu: binutils-final: Support more Power architectures.
* gnu/packages/commencement.scm (binutils-final)[arguments]: When checking if
the system is a Power architecture, instead of hard-coding "powerpc-linux",
use the target-powerpc? procedure so it works on more Power architectures.
[inputs]: Likewise.
2021-03-23 23:19:56 -07:00
Efraim Flashner 060478c32c
gnu: binutils-final: Provide bash for binary on powerpc-linux.
* gnu/packages/commencement.scm (binutils-final)[arguments]: On
powerpc-linux allow a reference to static-bash-for-glibc.
[inputs]: On powerpc-linux add static-bash-for-glibc.
2021-03-23 23:19:56 -07:00
Chris Marusich b2135b5d57
gnu: gcc-boot0: Enable 128-bit long double for POWER9.
* gnu/packages/commencement.scm (gcc-boot0) [#:configure-flags]: Add
--with-long-double-128 when the boot triplet is "powerpc64le-guix-linux-gnu",
instead of "powerpc64le-linux-gnu", which is incorrect.  The actual triplet
used during bootstrapping is "powerpc64le-guix-linux-gnu".
2021-03-23 23:19:56 -07:00
Leo Le Bouter 6e98e9ca92
gnu: glibc: Fix ldd path on powerpc*.
This should avoid some problems, such as "not a dynamic executable" errors.

* gnu/packages/patches/glibc-ldd-powerpc.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/base.scm: (glibc)[native-inputs]: Add it.
[arguments]: When building for powerpc* apply it.
* gnu/packages/commencement.scm (glibc-final-with-bootstrap-bash,
glibc-final)[native-inputs]: Add patch conditionally.

This patch has been adjusted to apply to master.

Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-23 23:19:55 -07:00
Chris Marusich cac88b28b8
gnu: gcc-4.7: On powerpc64le, fix /lib64 references.
Fixes: <https://bugs.gnu.org/46253>.

* gnu/packages/gcc.scm (gcc-4.7)[#:phases][pre-configure]: When the
gcc/config/rs6000 directory exists, replace "/lib64" with "/lib" in all files
within it.  Note that this fix will be picked up by any package that re-uses
the pre-configure phase from gcc-4.7 (e.g., all the usual gcc packages).
(make-libstdc++)[#:phases][fix-rs6000-libdir]: New phase, which does the same
as above.  It was necessary to duplicate the fix here because make-libstdc++
does not re-use the pre-configure phase from gcc-4.7.
2021-03-23 23:19:55 -07:00
Chris Marusich 8a1118a96c
gnu: bootstrap: Add support for powerpc64le-linux.
The bootstrap tarballs used by these bootstrap packages were created via the
following steps:

- Create a new x86_64 VM using QEMU.
- Use
  https://ftp.gnu.org/gnu/guix/guix-system-install-1.2.0.x86_64-linux.iso.xz
  to install Guix System 1.2.0 in the VM.
- Run: guix pull --no-substitutes --commit=662e7e28d576ada91fc9dec7d27c100666114f03
- Run: guix build --no-substitutes --target=powerpc64le-linux-gnu bootstrap-tarballs

With the exception of gcc-static, all bootstrap binaries contained in these
tarballs can be built reproducibly.  Unfortunately, gcc-static is not always
reproducible when everything is built from source on separate machines.
Despite investigation efforts, the cause remains unclear, so we have decided
to move forward with these binaries to unblock further bootstrapping work.
For details, see <https://bugs.gnu.org/41669>.

* gnu/packages/bootstrap.scm (%bootstrap-executables)
(bootstrap-executable-file-name, bootstrap-guile-url-path)
(bootstrap-guile-hash, %bootstrap-coreutils&co, %bootstrap-binutils)
(%bootstrap-glibc, %bootstrap-gcc): Add entries for powerpc64le-linux.
(%bootstrap-executable-base-urls): Add an entry for alpha.gnu.org.
2021-03-23 23:19:53 -07:00
Leo Famulari dc68018e01
gnu: Add cbonsai.
* gnu/packages/toys.scm (cbonsai): New variable.
2021-03-24 02:03:30 -04:00
Raghav Gururajan c2a9b05f02
gnu: bcunit: Update to 3.0.2-0.74021cc and enable more features.
* gnu/packages/linphone.scm (bcunit)[source]: Switch to git repository.
[version]: Update to 3.0.2-0.74021cc.
[outputs]: Add a "doc" output.
[arguments]: Remove the tests? argument, enabling tests.
[configure-flags]: Enable curses, doc, examples, tests and memtrace.
[phases]{patch-source, move-doc}: New phases.
{check}: Override phase.
[inputs]: Add ncurses.
[description]: Fix typo.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-24 00:05:38 -04:00
Raghav Gururajan c221d49510
gnu: Add libdecaf.
* gnu/packages/crypto.scm (libdecaf): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 22:24:27 -04:00
zimoun d0429747de
gnu: python2-widgetsnbextension: Remove package.
* gnu/packages/python-xyz.scm (python2-widgetsnbextension): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:06 -04:00
zimoun d8402031af
gnu: python2-utils: Remove package.
* gnu/packages/python-xyz.scm (python2-utils): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:06 -04:00
zimoun 82c772a774
gnu: python2-tables: Remove package.
* gnu/packages/python-xyz.scm (python2-tables): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:06 -04:00
zimoun 97f4fd8a74
gnu: python2-stem: Remove package.
* gnu/packages/python-xyz.scm (python2-stem): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:05 -04:00
zimoun f68dbdadba
gnu: python2-sh: Remove package.
* gnu/packages/python-xyz.scm (python2-sh): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:05 -04:00
zimoun 7c03695a24
gnu: python2-mpd2: Remove package.
* gnu/packages/mpd.scm (python2-mpd2): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:05 -04:00
zimoun c74c4377b3
gnu: python2-rq: Remove package.
* gnu/packages/databases.scm (python2-rq): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:05 -04:00
zimoun 84950c0d06
gnu: python2-nbxmpp: Remove package.
* gnu/packages/messaging.scm (python2-nbxmpp): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:05 -04:00
zimoun f72d345e44
gnu: python2-mutagen: Remove package.
* gnu/packages/music.scm (python2-mutagen): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:05 -04:00
zimoun 4c726e0698
gnu: python2-ipywidgets: Remove package.
* gnu/packages/python-xyz.scm (python2-ipywidgets): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:05 -04:00
zimoun 5f3411e401
gnu: python2-graphql-core: Remove package.
* gnu/packages/python-xyz.scm (python2-graphql-core): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:04 -04:00
zimoun ec2384b79d
gnu: python2-furl: Remove package.
* gnu/packages/python-web.scm (python2-furl): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:04 -04:00
zimoun bce0165f7c
gnu: python2-flask: Remove package.
* gnu/packages/python-web.scm (python2-flask): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:04 -04:00
zimoun 7502c13895
gnu: python2-httpbin: Remove package.
* gnu/packages/web.scm (python2-httpbin): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:04 -04:00
zimoun dab3c57d58
gnu: python2-flask-multistatic: Remove package.
* gnu/packages/python-web.scm (python2-flask-multistatic): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:04 -04:00
zimoun f44917ea55
gnu: python2-flask-login: Remove package.
* gnu/packages/python-web.scm (python2-flask-login): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:04 -04:00
zimoun d1e421ca0d
gnu: python2-flask-htmlmin: Remove package.
* gnu/packages/python-web.scm (python2-flask-htmlmin): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:04 -04:00
zimoun ec1a9c61e7
gnu: python2-flask-babel: Remove package.
* gnu/packages/python-web.scm (python2-flask-babel): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:37:56 -04:00
zimoun d201983475
gnu: python2-flask-wtf: Remove package.
* gnu/packages/python-web.scm (python2-flask-wtf): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:33:20 -04:00
zimoun b5bae212d6
gnu: python2-fido2: Remove package.
* gnu/packages/security-token.scm (python2-fido2): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:33:20 -04:00
zimoun 9541682c79
gnu: python2-yubikey-manager: Remove package.
* gnu/packages/security-token.scm (python2-yubikey-manager): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:33:20 -04:00
zimoun 6a098614b8
gnu: python2-dulwich: Remove package.
* gnu/packages/python-xyz.scm (python2-dulwich): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:33:20 -04:00
zimoun 6bafc5cf1e
gnu: python2-cairocffi: Remove.
* gnu/packages/python-xyz.scm (python2-cairocffi): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:33:19 -04:00
zimoun f21da33255
gnu: python2-arrow: Remove package.
* gnu/packages/time.scm (python2-arrow): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:33:19 -04:00
Léo Le Bouter 8b2b546396
gnu: java-xstream: Update to 1.4.16 [security fixes].
Fixes CVE-2021-21341, CVE-2021-21342, CVE-2021-21343, CVE-2021-21344,
CVE-2021-21345, CVE-2021-21346, CVE-2021-21347, CVE-2021-21348,
CVE-2021-21349, CVE-2021-21350 and CVE-2021-21351.

* gnu/packages/xml.scm (java-xstream): Update to 1.4.16.
[inputs]: Add java-mxparser, a fork of java-xpp3 made by upstream.
Java-xpp3 is still needed.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-03-23 23:29:14 +01:00
Léo Le Bouter 08b9e0ca0b
gnu: Add java-mxparser.
* gnu/packages/xml.scm (java-mxparser): New variable.

Co-Authored-By: Julien Lepiller <julien@lepiller.eu>
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-03-23 23:29:07 +01:00
Julien Lepiller 4490dff98c
gnu: Add java-xmlpull-api-v1.
* gnu/packages/xml.scm (java-xmlpull-api-v1): New variable.
2021-03-23 23:28:54 +01:00
ZmnSCPxj d3c8aa3f82
gnu: bitcoin-core: Add 0.21.0.
* gnu/packages/finance.scm (bitcoin-core): Rename to …
(bitcoin-core-0.21): … this, and update to 0.21.
(bitcoin-core-0.20): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2021-03-23 21:44:22 +00:00
Christopher Baines aa13529baf
gnu: Add snapcast.
* gnu/packages/audio.scm (snapcast): New variable.
2021-03-23 21:11:34 +00:00
Tobias Geerinckx-Rice 042b2eb1ae
gnu: parallel: Update to 20210322.
* gnu/packages/parallel.scm (parallel): Update to 20210322.
2021-03-23 21:08:15 +01:00
Tobias Geerinckx-Rice ea27cbe113
gnu: skim: Update to 0.9.4.
* gnu/packages/crates-io.scm (skim): Update to 0.9.4.
[arguments]: Update #:cargo-inputs: add rust-atty-0.2 and update
rust-beef-0.4 to rust-beef-0.5, rust-crossbeam-0.7 to
rust-crossbeam-0.8, rust-env-logger-0.6 to rust-env-logger-0.8,
rust-nix-0.14 to rust-nix-0.19, rust-time-0.1 to rust-time-0.2, and
rust-vte-0.3 to rust-vte-0.9.
2021-03-23 21:08:15 +01:00
Tobias Geerinckx-Rice 7932034d07
gnu: rust-vte@0.9: New package version.
* gnu/packages/crates-io.scm (rust-vte-0.9): New public variable.
2021-03-23 20:34:32 +01:00
Tobias Geerinckx-Rice 56b0568450
gnu: rust-tuikit@0.4: Update to 0.4.5.
* gnu/packages/crates-io.scm (rust-tuikit-0.4): Update to 0.4.5.
2021-03-23 20:34:32 +01:00
Tobias Geerinckx-Rice 7dbb5ca361
gnu: rust-time@0.2: Update to 0.2.23.
* gnu/packages/crates-io.scm (rust-time-0.2): Update to 0.2.23.
2021-03-23 20:34:31 +01:00
Tobias Geerinckx-Rice 1ef63d74d9
gnu: rust-beef: Update to 0.5.0.
* gnu/packages/crates-io.scm (rust-beef-0.4): Rename to...
(rust-beef-0.5): ...this.  Update to 0.5.0.
2021-03-23 20:34:31 +01:00
Mathieu Othacehe 3c9a353849
services: cuirass: Set default port values.
* gnu/services/cuirass.scm (<cuirass-remote-server-configuration>,
<cuirass-configuration>): Set default port values.
2021-03-23 20:30:49 +01:00
Mark H Weaver feb68a26cc
gnu: icecat: Update to 78.9.0-guix0-preview1 [security fixes].
Includes fixes for CVE-2021-23981, CVE-2021-23982, CVE-2021-23984,
and CVE-2021-23987.

* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update upstream source hash.
2021-03-23 14:24:54 -04:00
Vinicius Monego 8fae75a358
gnu: Add libheif.
* gnu/packages/image.scm (libheif): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-03-23 13:26:41 -04:00
Leo Famulari e540663203
gnu: Borg: Adjust snippet for 1.1.16.
This is a followup to commit 8cb7854d27.

* gnu/packages/backup.scm (borg)[source]: Update list of Cython-generated files
to delete.
2021-03-23 13:15:54 -04:00
Nicolas Goaziou 2ee361c764
gnu: giac: Update to 1.7.0-1.
* gnu/packages/algebra.scm (giac): Update to 1.7.0-1.
2021-03-23 18:12:17 +01:00
Mathieu Othacehe eda735fb61
services: cuirass: Adapt to Cuirass 1.0.
* gnu/services/cuirass.scm (cuirass-shepherd-service,
cuirass-remote-worker-shepherd-service): Adapt to Cuirass 1.0.
2021-03-23 16:47:48 +01:00
Mathieu Othacehe eee69da3a5
tests: Remove Cuirass tests.
Those tests don't make sense anymore as the Cuirass 1.0 version has removed
the possibility to execute a custom registration procedure.

* gnu/tests/cuirass.scm: Remove it.
* gnu/local.mk (GNU_SYSTEM_MODULES): Ditto.
2021-03-23 16:47:47 +01:00
Tobias Geerinckx-Rice 5802858be3
gnu: fcitx5-qt: Update to 5.0.5.
* gnu/packages/fcitx5.scm (fcitx5-qt): Update to 5.0.5.
2021-03-23 14:20:06 +01:00
Tobias Geerinckx-Rice 46cac065be
gnu: efibootmgr: Update to 17.
* gnu/packages/linux.scm (efibootmgr): Update to 17.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
Add a patch to build against efivar@37.
* gnu/packages/patches/efibootmgr-remove-extra-decl.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-03-23 14:20:06 +01:00
Tobias Geerinckx-Rice 6139c879a5
gnu: perl-moosex-getopt: Update to 0.75.
* gnu/packages/perl.scm (perl-moosex-getopt): Update to 0.75.
2021-03-23 14:20:05 +01:00
Tobias Geerinckx-Rice 94963642a8
gnu: yggdrasil: Update to 0.3.16.
* gnu/packages/networking.scm (yggdrasil): Update to 0.3.16.
2021-03-23 14:20:05 +01:00
Tobias Geerinckx-Rice dbcd90cba7
gnu: rpm: Update to 4.16.1.3.
* gnu/packages/package-management.scm (rpm): Update to 4.16.1.3.
2021-03-23 14:20:05 +01:00
Tobias Geerinckx-Rice f119612d64
gnu: cgal: Update to 5.2.1.
* gnu/packages/graphics.scm (cgal): Update to 5.2.1.
[source]: Remove patch.
* gnu/packages/patches/cgal-security-pr-5371.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-03-23 14:20:05 +01:00
Tobias Geerinckx-Rice 1585452e1f
gnu: wildmidi: Update to 0.4.4.
* gnu/packages/audio.scm (wildmidi): Update to 0.4.4.
2021-03-23 14:20:04 +01:00
Tobias Geerinckx-Rice 6cea2873a1
gnu: mpg123: Update to 1.26.5.
* gnu/packages/mp3.scm (mpg123): Update to 1.26.5.
2021-03-23 14:20:04 +01:00
Tobias Geerinckx-Rice 8cb7854d27
gnu: borg: Update to 1.1.16.
* gnu/packages/backup.scm (borg): Update to 1.1.16.
2021-03-23 14:20:04 +01:00
Tobias Geerinckx-Rice 3d5cca1a32
gnu: libime: Update to 1.0.5.
* gnu/packages/fcitx5.scm (libime): Update to 1.0.5.
2021-03-23 14:20:04 +01:00
Tobias Geerinckx-Rice 688c066e35
gnu: xcb-imdkit: Update to 1.0.3.
* gnu/packages/fcitx5.scm (xcb-imdkit): Update to 1.0.3.
2021-03-23 14:20:03 +01:00
Leo Prikler 9d4bc79b2a
gnu: minetest-mineclone: Update to 0.71.0.
* gnu/packages/games.scm (minetest-mineclone): Update to 0.71.0.
2021-03-23 13:54:21 +01:00
Mathieu Othacehe 0efd68681d
gnu: cuirass: Update to 1.0.0-2.6f4a203.
* gnu/packages/ci.scm (cuirass): Update to 1.0.0-2.6f4a203.
2021-03-23 12:01:23 +01:00
Mathieu Othacehe 862af8c2ed
ci: Change manifest argument type.
* gnu/ci.scm (arguments->manifests): Change manifest argument type.
2021-03-23 11:48:35 +01:00
Mathieu Othacehe d1e1682749
gnu: cuirass: Update to 1.0.0-1.0497e0d.
* gnu/packages/ci.scm (cuirass): Update to 1.0.0-1.0497e0d.
2021-03-23 11:48:35 +01:00
la snesne 7fc1fac64a
gnu: minetest: Enable tests.
* gnu/packages/games.scm (minetest)[arguments]: Remove #:tests?.
Add #:phases.

Co-authored-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-03-23 11:30:54 +01:00
la snesne b6670d5b3a
gnu: minetest: Update to 5.4.0.
* gnu/packages/games (minetest, minetest-data): Update to 5.4.0.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-03-23 11:30:20 +01:00
Efraim Flashner e44b968bf6
gnu: rust-env-logger-0.8: Update to 0.8.3.
* gnu/packages/crates-io.scm (rust-env-logger-0.8): Update to 0.8.3.
2021-03-23 12:24:39 +02:00
Vagrant Cascadian 45dfcdba86
gnu: diffoscope: Update to 170.
* gnu/packages/diffoscope.scm (diffoscope): Update to 170.
  [arguments]: Remove skip-dex-test-with-missing-procyon phase.
2021-03-22 19:50:28 -07:00
Timothy Sample ca5420d3b2
gnu: Add disarchive.
* gnu/packages/backup.scm (disarchive): New variable.
2021-03-22 22:18:29 -04:00
Tobias Geerinckx-Rice 897177c98e
gnu: celluloid: Update to 0.21.
* gnu/packages/video.scm (celluloid): Update to 0.21.
2021-03-23 00:09:51 +01:00
Tobias Geerinckx-Rice 4cc2a28157
gnu: wesnoth: Update to 1.14.16.
* gnu/packages/games.scm (wesnoth): Update to 1.14.16.
2021-03-22 23:52:56 +01:00
Tobias Geerinckx-Rice 98c3eed1d5
gnu: xchm: Update to 1.32.
* gnu/packages/ebook.scm (xchm): Update to 1.32.
2021-03-22 23:52:56 +01:00
Tobias Geerinckx-Rice 4d2553e7b5
gnu: man-pages: Update to 5.11.
* gnu/packages/man.scm (man-pages): Update to 5.11.
2021-03-22 23:52:55 +01:00
Xinglu Chen b9c150fc9a
gnu: Add emacs-password-store-otp.
* gnu/packages/emacs-xyz.scm (emacs-password-store-otp): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-22 22:45:44 +01:00
Nicolas Goaziou 75a95ed95f
gnu: python-duniterpy: Update to 0.62.0.
* gnu/packages/finance.scm (python-duniterpy): Update to 0.62.0.
2021-03-22 22:36:43 +01:00
Nicolas Goaziou 3de6fb621a
gnu: emacs-auctex: Update to 13.0.5.
* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 13.0.5.
2021-03-22 22:34:00 +01:00
Alexandr Vityazev 6c1217c22c
gnu: Add emacs-ivy-hydra.
* gnu/packages/emacs-xyz.scm (emacs-ivy-hydra): New variable.

Signed-off-by: Jelle Licht <jlicht@fsfe.org>
2021-03-22 22:02:00 +01:00
Alexandr Vityazev b246420e40
gnu: Add emacs-ivy-avy.
* gnu/packages/emacs-xyz.scm (emacs-ivy-avy): New variable.

Signed-off-by: Jelle Licht <jlicht@fsfe.org>
2021-03-22 22:01:39 +01:00
Léo Le Bouter ce995d5206
gnu: mate-panel: Add missing inputs for Wayland support.
* gnu/packages/mate.scm (mate-panel)[inputs]: Add gtk-layer-shell and
wayland.
2021-03-22 15:45:33 +01:00
Léo Le Bouter e2757be5d5
gnu: gtk-layer-shell: Update to 0.6.0.
* gnu/packages/gtk.scm (gtk-layer-shell): Update to 0.6.0.
[source]: Switch to git-fetch because release tarballs are no longer provided
by upstream.
[arguments]<#:configure-flags>: Add "-Dtests=true" otherwise tests are not
built for 'check phase to work.
2021-03-22 15:43:15 +01:00
Hong Li ee4fc3b662
gnu: Add r-signac.
* gnu/packages/bioinformatics.scm (r-signac): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2021-03-22 14:27:17 +01:00
Ricardo Wurmus dd4670d40d
gnu: Add r-lsa.
* gnu/packages/cran.scm (r-lsa): New variable.
2021-03-22 14:27:17 +01:00
Hong Li 0ff888108a
gnu: Add r-chromstar.
* gnu/packages/bioconductor.scm (r-chromstar): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2021-03-22 14:27:13 +01:00
Hong Li 1f958631ef
gnu: Add r-chromstardata.
* gnu/packages/bioconductor.scm (r-chromstardata): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2021-03-22 14:26:58 +01:00
Pierre Neidhardt a2f3a456be
gnu: nyxt: Update to 2-pre-release-6.
* gnu/packages/web-browsers.scm (nyxt): Update to 2-pre-release-6.
2021-03-22 13:18:35 +01:00
Pierre Neidhardt 8e92c58bc3
gnu: sbcl: Update to 2.1.2.
* gnu/packages/lisp.scm (sbcl): Update to 2.1.2.
2021-03-22 13:18:35 +01:00
Efraim Flashner ff1c7e4025
gnu: sequoia4pEp: Adjust inputs.
* gnu/packages/sequoia.scm (sequoia4pEp)[arguments]: Override inherited
cargo-inputs, cargo-development-inputs. Replace inherited 'unpin-deps
phase.
2021-03-22 11:20:17 +02:00
Efraim Flashner dd70fa8108
gnu: rust-syn-1: Update to 1.0.64.
* gnu/packages/crates-io.scm (rust-syn-1): Update to 1.0.64.
2021-03-22 11:12:18 +02:00
Efraim Flashner bf3033ef9c
gnu: Add rust-rusqlite-0.19.
* gnu/packages/crates-io.scm (rust-rusqlite-0.19): New variable.
2021-03-22 11:02:11 +02:00
Efraim Flashner 87bd8ae928
gnu: rust-capnp-rpc-0.13: Fix build.
* gnu/packages/crates-io.scm (rust-capnp-rpc-0.13)[arguments]: Don't
skip build.
[cargo-inputs]: Replace rust-futures-0.1 with 0.3.
2021-03-22 10:44:23 +02:00
Efraim Flashner 7bc7398c28
gnu: rust-capnp-futures-0.13: Fix build.
* gnu/packages/crates-io.scm (rust-capnp-futures-0.13)[arguments]: Don't
skip build.
[cargo-inputs]: Replace rust-futures-0.1 with 0.3.
[cargo-development-inputs]: Replace rust-quickcheck-0.2 with 0.9.
2021-03-22 10:43:09 +02:00
Efraim Flashner e055e2d5f7
gnu: Add rust-capnp-rpc-0.10: New variable.
* gnu/packages/crates-io.scm (rust-capnp-rpc-0.10): New variable.
2021-03-22 10:39:26 +02:00
Efraim Flashner a6d8701574
gnu: Add rust-capnp-futures-0.10.
* gnu/packages/crates-io.scm (rust-capnp-futures-0.10): New variable.
2021-03-22 10:38:35 +02:00
Efraim Flashner af402f42b4
gnu: Add rust-capnpc-0.10.
* gnu/packages/crates-io.scm (rust-capnpc-0.10): New variable.
2021-03-22 10:37:42 +02:00
Efraim Flashner eed0e6173a
gnu: rust-capnp-0.13: Fix build.
* gnu/packages/crates-io.scm (rust-capnp-0.13)[arguments]: Don't skip
build.
[cargo-inputs]: Remove rust-futures-0.1. Replace rust-quickcheck-0.2
with 0.9.
[cargo-development-inputs]: Replace rust-quickcheck-0.2 with 0.9.
2021-03-22 10:34:37 +02:00
Efraim Flashner d177db7997
gnu: Add rust-capnp-0.10.
* gnu/packages/crates-io.scm (rust-capnp-0.10): New variable.
2021-03-22 10:29:42 +02:00
Efraim Flashner 2d24b80f3c
gnu: rust-log-0.4: Fix inputs.
* gnu/packages/crates-io.scm (rust-log-0.4)[arguments]: Don't skip
build. Skip tests.
[cargo-inputs]: Replace rust-cfg-if-0.1 with 1.
[cargo-development-inputs]: Add rust-serde-1, rust-serde-test-1,
rust-sval-1, rust-value-bag-1.
2021-03-22 10:28:50 +02:00
Efraim Flashner 4d0fe40f65
gnu: sequoia4pEp: Move to sequoia.scm.
Don't have cross module package inheritance.

* gnu/packages/pep.scm (sequoia4pEp): Move to ...
* gnu/packages/sequoia.scm (sequoia4pEp): ... here. Hide package.
2021-03-22 09:54:19 +02:00
Efraim Flashner ccb7d1340d
gnu: python-pytest-django: Build with pytest-6.
* gnu/packages/django.scm (python-pytest-django)[propagated-inputs]:
Replace python-pytest with python-pytest-6.
2021-03-22 09:19:27 +02:00
Felix Gruber 17b408e6a2
gnu: oil: Update to 0.8.8.
* gnu/packages/shells.scm (oil): Update to 0.8.8.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-03-21 19:43:32 -04:00
Ludovic Courtès d30f8f3a97
gnu: poke: Update to 1.1.
* gnu/packages/engineering.scm (poke): Update to 1.1.
2021-03-21 23:41:01 +01:00
Tobias Geerinckx-Rice 5f9b28b231
gnu: balsa: Update to 2.6.2.
* gnu/packages/mail.scm (balsa): Update to 2.6.2.
[inputs]: Add libassuan.  Upgrade gtksourceview.
2021-03-21 22:13:32 +01:00
Tobias Geerinckx-Rice a0b3d968be
gnu: msmtp: Update to 1.8.15.
* gnu/packages/mail.scm (msmtp): Update to 1.8.15.
2021-03-21 22:13:32 +01:00
Tobias Geerinckx-Rice 759e9acd8f
gnu: webkitgtk: Update to 2.30.6.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.30.6.
2021-03-21 22:13:32 +01:00
Tobias Geerinckx-Rice b3c29d90a6
gnu: openresolv: Update to 3.12.0.
* gnu/packages/dns.scm (openresolv): Update to 3.12.0.
2021-03-21 22:13:31 +01:00
Tobias Geerinckx-Rice 35c55931bf
gnu: xfsprogs: Update to 5.11.0.
* gnu/packages/linux.scm (xfsprogs): Update to 5.11.0.
2021-03-21 22:13:31 +01:00
Tobias Geerinckx-Rice 43ed895379
gnu: rng-tools: Update to 6.12.
* gnu/packages/linux.scm (rng-tools): Update to 6.12.
2021-03-21 22:13:31 +01:00
Tobias Geerinckx-Rice bba6d15210
gnu: haveged: Update to 1.9.14.
* gnu/packages/linux.scm (haveged): Update to 1.9.14.
2021-03-21 22:13:31 +01:00
Tobias Geerinckx-Rice cf5a4b2e45
gnu: mbpfan: Update to 2.2.1.
* gnu/packages/linux.scm (mbpfan): Update to 2.2.1.
2021-03-21 22:13:30 +01:00
Tobias Geerinckx-Rice 8ce8ff7db9
gnu: perl-net-http: Update to 6.21.
* gnu/packages/web.scm (perl-net-http): Update to 6.21.
2021-03-21 22:13:30 +01:00
Efraim Flashner c721e00ef1
gnu: python-pygithub: Update to 1.54.1.
* gnu/packages/python-xyz.scm (python-pygithub): Update to 1.54.1.
[arguments]: Remove 'disable-failing-tests, 'prepare-for-tests phases.
Add custom 'check phase.
[propagated-inputs]: Add python-cryptography.
[native-inputs]: Add python-httpretty, python-pytest.
2021-03-21 22:24:27 +02:00
Efraim Flashner 9a75728318
gnu: python-httpretty: Update to 1.0.5.
* gnu/packages/web.scm (python-httpretty): Update to 1.0.5.
[arguments]: Disable tests. Add custom 'check phase.
[propagated-inputs]: Remove field.
[native-inputs]: Remove python-httplib2, python-mock,
python-nose-randomly, python-urllib3. Add python-eventlet.
2021-03-21 22:18:51 +02:00
Leo Famulari 46479ec558
gnu: linux-libre 4.19: Update to 4.19.182.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.182.
(linux-libre-4.19-pristine-source): Update hash.
2021-03-21 13:26:08 -04:00
Leo Famulari 06017698c6
gnu: linux-libre 5.4: Update to 5.4.107.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.107.
(linux-libre-5.4-pristine-source): Update hash.
2021-03-21 13:26:08 -04:00
Leo Famulari 0a202d0b44
gnu: linux-libre 5.10: Update to 5.10.25.
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.25.
(linux-libre-5.10-pristine-source): Update hash.
2021-03-21 13:26:08 -04:00
Leo Famulari 7b01a59d85
gnu: linux-libre: Update to 5.11.8.
* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.8.
(linux-libre-5.11-pristine-source): Update hash.
2021-03-21 13:26:04 -04:00
Tobias Geerinckx-Rice 5229d56db0
gnu: wcslib: Update to 7.5.
* gnu/packages/astronomy.scm (wcslib): Update to 7.5.
2021-03-21 15:36:07 +01:00
Tobias Geerinckx-Rice 660208cfd5
gnu: gnumeric: Update to 1.12.49.
* gnu/packages/gnome.scm (gnumeric): Update to 1.12.49.
2021-03-21 15:36:07 +01:00
Tobias Geerinckx-Rice 7244ec07a2
gnu: jasper: Update to 2.0.27.
* gnu/packages/image.scm (jasper): Update to 2.0.27.
2021-03-21 15:36:06 +01:00
Tobias Geerinckx-Rice b8b398a7d3
gnu: fluidsynth: Update to 2.1.8.
* gnu/packages/audio.scm (fluidsynth): Update to 2.1.8.
2021-03-21 15:36:06 +01:00
Tobias Geerinckx-Rice ebe967e1b7
gnu: vim: Update to 8.2.2632.
* gnu/packages/vim.scm (vim): Update to 8.2.2632.
[arguments]: Disable another test (Test_combining_double_width).
2021-03-21 15:36:06 +01:00
Tobias Geerinckx-Rice f03a2e99fa
gnu: inxi-minimal: Update to 3.3.03-1.
* gnu/packages/admin.scm (inxi-minimal): Update to 3.3.03-1.
2021-03-21 15:36:06 +01:00
Tobias Geerinckx-Rice 2ac2a57f37
gnu: qtractor: Update to 0.9.21.
* gnu/packages/music.scm (qtractor): Update to 0.9.21.
2021-03-21 15:36:06 +01:00
Tobias Geerinckx-Rice e83faf04fa
gnu: padthv1: Update to 0.9.21.
* gnu/packages/music.scm (padthv1): Update to 0.9.21.
2021-03-21 15:36:05 +01:00
Tobias Geerinckx-Rice aa1f2945f0
gnu: samplv1: Update to 0.9.21.
* gnu/packages/music.scm (samplv1): Update to 0.9.21.
2021-03-21 15:36:05 +01:00
Tobias Geerinckx-Rice 945d9cea18
gnu: drumkv1: Update to 0.9.21.
* gnu/packages/music.scm (drumkv1): Update to 0.9.21.
2021-03-21 15:36:05 +01:00
Tobias Geerinckx-Rice 37b2e9c3b6
gnu: synthv1: Update to 0.9.21.
* gnu/packages/music.scm (synthv1): Update to 0.9.21.
2021-03-21 15:36:05 +01:00
Tobias Geerinckx-Rice d31db5cff3
gnu: youtube-dl: Update to 2021.03.14.
* gnu/packages/video.scm (youtube-dl): Update to 2021.03.14.
2021-03-21 15:36:04 +01:00
Jelle Licht 177dcce76e
gnu: emacs-package-lint: Install missing data.
The `package-lint-symbol-info' constant in this package depends on the
stdlib-changes file being installed.

* gnu/packages/emacs-xyz.scm (emacs-package-lint)[arguments]: Add the
  #:include argument.
2021-03-21 15:04:55 +01:00
Raghav Gururajan 06bdb640ce
gnu: Add movim-desktop.
* gnu/packages/messaging.scm (movim-desktop): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-21 12:33:28 +01:00
Timothy Sample 4cd88522f2
gnu: Add guile-quickcheck.
* gnu/packages/guile-xyz.scm (guile-quickcheck): New variable.
2021-03-21 12:05:54 +01:00
Nicolas Goaziou aa24d2d44c
gnu: python-pikepdf: Update to 2.9.1.
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.9.1.
2021-03-21 10:12:52 +01:00
Nicolas Goaziou f156a07d43
gnu: emacs-ebuild-mode: Update to 1.52.
* gnu/packages/emacs-xyz.scm (emacs-ebuild-mode): Update to 1.52.
2021-03-21 10:11:22 +01:00
Nicolas Goaziou e559288c1b
gnu: fet: Update to 5.49.1.
* gnu/packages/education.scm (fet): Update to 5.49.1.
2021-03-21 10:10:42 +01:00
Vinícius dos Santos Oliveira ff34334cfc
gnu: emilua: Update to 0.3.0.
* gnu/packages/lua.scm (emilua): Update to 0.3.0.
[arguments]: Add guix version suffix, enable http module. Disable
manpages.
[inputs]: Add fmt.
[search-paths]: New field.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-21 11:04:41 +02:00
Vagrant Cascadian ba0dc1dbc1
gnu: Add linux-libre-arm-generic at version 5.10.
* gnu/packages/linux.scm (linux-libre-arm-generic-5.10): New variable.
2021-03-20 17:46:33 -07:00
Vagrant Cascadian ece9fba60e
gnu: Add linux-libre-arm64-generic at version 5.10.
* gnu/packages/linux.scm (linux-libre-arm64-generic-5.10): New variable.
2021-03-20 17:44:10 -07:00
nixo d4987a50ce
gnu: Add julia-http.
* gnu/packages/julia-xyz.scm (julia-http): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-20 22:29:15 +01:00
nixo 52d09b1f14
gnu: Add julia-bufferedstreams.
* gnu/packages/julia-xyz.scm (julia-bufferedstreams): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-20 22:29:15 +01:00
nixo fc78157858
gnu: Add julia-inifile.
* gnu/packages/julia-xyz.scm (julia-inifile): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-20 22:29:15 +01:00
nixo 8f59a9fb6d
gnu: Add julia-uris.
* gnu/packages/julia-xyz.scm (julia-uris): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-20 22:29:15 +01:00
nixo a72d3ca844
gnu: Add julia-mbedtls.
* gnu/packages/julia-xyz.scm (julia-mbedtls): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-20 22:29:15 +01:00
nixo 3291e4ba97
gnu: Add julia-mbedtls-jll.
* gnu/packages/julia-xyz.scm (julia-mbedtls-jll): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-20 22:29:14 +01:00
nixo a06db9c1ee
gnu: Add julia-jllwrappers.
* gnu/packages/julia-xyz.scm (julia-jllwrappers): New variable.
* doc/guix.texi (julia-build-system): Document how to use jllwrappers to use
  to guix binary packages.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2021-03-20 22:29:14 +01:00
nixo 03010d5d3e
gnu: Add julia-benchmarktools.
* gnu/packages/julia-xyz.scm (julia-benchmarktools): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-20 22:29:14 +01:00
nixo 81d45a66d5
gnu: julia-adapt: Set file-name according to standards.
* gnu/packages/julia-xyz.scm (julia-adapt)[source]: Change 'file-name'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-20 22:29:14 +01:00
Maxim Cournoyer cec4f5f556
gnu: guile-lib: Update to 0.2.7.
* gnu/packages/guile-xyz.scm (guile-lib): Remove trailing #t.
[source]: Remove snippet and modules field.
[phases]{patch-for-cross-compilation}: Remove phase.
[native-inputs]: Add pkg-config.
2021-03-20 15:55:18 -04:00
Julien Lepiller 13953f0e7e
gnu: glib: Partially revert bb804a0d58.
It contained some changes used during tests that should not have been
commited.

* gnu/packages/glib (glib/fixed): Do not make public.
2021-03-20 18:25:44 +01:00
Julien Lepiller bb804a0d58
gnu: glib: Increase timeout for armhf builds.
* gnu/packages/glib.scm (glib)[arguments]: Increase timeout for armhf
builds.
2021-03-20 18:22:44 +01:00
Raghav Gururajan b09967bc58
gnu: Add psi-plus.
* gnu/packages/messaging.scm (psi-plus): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-20 17:51:31 +01:00
Raghav Gururajan 54fd3167ff
gnu: Add qite.
* gnu/packages/qt.scm (qite): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-20 17:50:13 +01:00
Raghav Gururajan 7f7ad800b0
gnu: Add qhttp.
* gnu/packages/web.scm (qhttp): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-20 17:48:56 +01:00
Raghav Gururajan f5e69549ba
gnu: Add usrsctp.
* gnu/packages/networking.scm (usrsctp): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-20 17:47:03 +01:00
Guillaume Le Vaillant 5adfaa6853
gnu: Add kappanhang.
* gnu/packages/radio.scm (kappanhang): New variable.
2021-03-20 11:19:30 +01:00
Guillaume Le Vaillant caf3209a8f
gnu: Add go-go-uber-org-zap.
* gnu/packages/golang.scm (go-go-uber-org-zap): New variable.
2021-03-20 11:19:29 +01:00
Guillaume Le Vaillant 05d261b88e
gnu: Add go-honnef-co-go-tools.
* gnu/packages/golang.scm (go-honnef-co-go-tools): New variable.
2021-03-20 11:19:29 +01:00
Guillaume Le Vaillant 81aa7cea64
gnu: Add go-github-com-kisielk-gotool.
* gnu/packages/golang.scm (go-github-com-kisielk-gotool): New variable.
2021-03-20 11:19:29 +01:00
Guillaume Le Vaillant 81976123b2
gnu: Add go-golang-org-x-lint.
* gnu/packages/golang.scm (go-golang-org-x-lint): New variable.
2021-03-20 11:19:29 +01:00
Guillaume Le Vaillant 08c3614125
gnu: Add go-go-uber-org-multierr.
* gnu/packages/golang.scm (go-go-uber-org-multierr): New variable.
2021-03-20 11:19:29 +01:00
Guillaume Le Vaillant 32c979675e
gnu: Add go-go-uber-org-atomic.
* gnu/packages/golang.scm (go-go-uber-org-atomic): New variable.
2021-03-20 11:19:29 +01:00
Guillaume Le Vaillant 3554527c53
gnu: Add go-github-com-pborman-getopt.
* gnu/packages/golang.scm (go-github-com-pborman-getopt): New variable.
2021-03-20 11:19:29 +01:00
Guillaume Le Vaillant efbc8db0f0
gnu: Add go-github-com-mesilliac-pulse-simple.
* gnu/packages/golang.scm (go-github-com-mesilliac-pulse-simple): New
  variable.
2021-03-20 11:19:29 +01:00
Guillaume Le Vaillant aa45673746
gnu: Add go-github-com-akosmarton-papipes.
* gnu/packages/golang.scm (go-github-com-akosmarton-papipes): New variable.
2021-03-20 11:19:29 +01:00
Greg Hogan 6457985e39
gnu: abseil-cpp: Patch sterror_test.
* gnu/packages/patches/abseil-cpp-fix-gtest.patch: Renamed file.
* gnu/packages/patches/abseil-cpp-fix-strerror_test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Rename / add files.
* gnu/packages/cpp.scm (abseil-cpp)[source]: Use files.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-19 22:32:40 +01:00
Greg Hogan c4d616f7c6
gnu: abseil-cpp: Update to 20200923.3.
* gnu/packages/cpp.scm (abseil-cpp): Update to 20200923.3.
[arguments]: Enable external googletest.
* gnu/packages/patches/abseil-cpp-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-19 22:17:03 +01:00
EuAndreh f08a60bbec
gnu: Add fzf.
* gnu/packages/terminals.scm (fzf): New variable, which inherits
  from the existing go-github-com-junegunn-fzf package, but also
  install other binary, and completion for direct usage.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-19 22:13:51 +01:00
Xinglu Chen 369d0e7f5c
gnu: Add git2cl.
* gnu/packages/version-control.scm (git2cl): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-19 21:51:06 +01:00
David Thompson 1ab03fb745
gnu: srt2vtt: Update to 0.2.
* gnu/packages/video.scm (srt2vtt): Update to 0.2.  Wrap executable.
2021-03-19 11:57:46 -04:00
Raghav Gururajan 1521775bcb
gnu: Add psi.
* gnu/packages/messaging.scm (psi): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-19 15:40:32 +01:00
Yoav Marco 9991b5e3e5
gnu: Add dragon-drop.
* gnu/packages/gtk.scm (dragon-drop): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-19 13:57:00 +01:00
jgart b6f0c99201
gnu: vis: Update to 0.7.
* gnu/packages/text-editors.scm (vis): Update to 0.7.
[home-page, source]: Use sourcehut upstream URIs instead of github.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-19 13:50:17 +01:00
Boris A. Dekshteyn 7b79ca0a05
gnu: swi-prolog: Update to 8.3.20.
* gnu/packages/prolog.scm (swi-prolog): Update to 8.3.20.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-19 13:24:17 +01:00
Ludovic Courtès ee21803288
gnu: openmpi: Update to 4.1.0.
* gnu/packages/mpi.scm (openmpi): Update to 4.1.0.
2021-03-19 13:23:27 +01:00
Ludovic Courtès 14aa86e50c
gnu: openmpi: Add 'release-monitoring-url' property.
* gnu/packages/mpi.scm (openmpi)[properties]: New field.
2021-03-19 13:23:26 +01:00
Léo Le Bouter 60d629d777
gnu: busybox: Update to 1.33.0.
* gnu/packages/busybox.scm (busybox): Update to 1.33.0.
2021-03-19 12:00:13 +01:00
Léo Le Bouter 572528e7dd
gnu: busybox: Fix CVE-2021-28831.
* gnu/packages/patches/busybox-CVE-2021-28831.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/busybox.scm (busybox): Apply it.
2021-03-19 11:56:38 +01:00
Léo Le Bouter c1245f01ef
gnu: ruby-kramdown: Update to 2.3.1 [fixes CVE-2021-28834].
* gnu/packages/ruby.scm (ruby-kramdown): Update to 2.3.1.
2021-03-19 11:44:41 +01:00
Marius Bakke 1155a88308
gnu: ungoogled-chromium: Update to 89.0.4389.90-1.
* gnu/packages/patches/ungoogled-chromium-system-opus.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 89.
(%chromium-version): Remove variable.
(%ungoogled-revision): Set to 89.0.4389.90-1.
(%ungoogled-origin): Conditionally set file name based on commit/tag.
(%guix-patches): Add the new file.
(libvpx/chromium): Update to 1.9.0-104-gb5d77a48d.
(ungoogled-chromium)[version]: Use %UNGOOGLED-REVISION.
[source]: Update hash.
[arguments]: Adjust #:configure-flags for build system changes.  Don't build
with external WebRTC SSL library.  Remove obsolete substitution.
[inputs]: Remove OPENSSL.  Change from PIPEWIRE to PIPEWIRE-0.3.
2021-03-19 00:14:11 +01:00
Tobias Geerinckx-Rice bb8a0d8057
gnu: emacsy-minimal: Fix build.
* gnu/packages/guile-xyz.scm (emacsy-minimal)[native-inputs]:
Add autoconf, automake, gettext-minimal, libtool, pkg-config,
and texinfo.
2021-03-18 21:07:46 +01:00
Ryan Prior via Guix-patches via efe7a17406
gnu: Add countdown.
* gnu/packages/time.scm (countdown): New variable.

Also adds copyright, adds necessary module dependencies, and sorts them alphabetically.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-18 19:41:32 +01:00
Morgan Smith a398e06cad
gnu: emacs-flymake-shellcheck: Update to 0.1-1.ac534e9
* gnu/packages/emacs-xyz.scm (emacs-flymake-shellcheck): Update to 0.1-1.ac534e9

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-18 19:37:35 +01:00
Nicolas Goaziou bfaeee5675
gnu: emacs-leaf: Update to 4.4.4.
* gnu/packages/emacs-xyz.scm (emacs-leaf): Update to 4.4.4.
2021-03-18 17:35:22 +01:00
Tobias Geerinckx-Rice b6df89efb0
gnu: dhewm3: Update to 1.5.1.
* gnu/packages/game-development.scm (dhewm3): Update to 1.5.1.
2021-03-18 17:08:11 +01:00
Tobias Geerinckx-Rice c2265e0285
gnu: elixir: Update to 1.11.4.
* gnu/packages/elixir.scm (elixir): Update to 1.11.4.
2021-03-18 17:08:10 +01:00
Tobias Geerinckx-Rice d9bdd6fa92
gnu: goffice: Update to 0.10.49.
* gnu/packages/gnome.scm (goffice): Update to 0.10.49.
2021-03-18 17:08:10 +01:00
Tobias Geerinckx-Rice e999ea12ea
gnu: di: Update to 4.49.
* gnu/packages/admin.scm (di): Update to 4.49.
[source]: Update URL.
2021-03-18 17:08:10 +01:00
Tobias Geerinckx-Rice 2baae75e82
gnu: isc-dhcp: Update bundled bind to 9.11.29.
* gnu/packages/admin.scm (isc-dhcp)[inputs]: Update bundled bind to
9.11.29.
2021-03-18 17:08:10 +01:00
Tobias Geerinckx-Rice 000e27b3d7
gnu: bind: Update to 9.16.13.
* gnu/packages/dns.scm (isc-bind): Update to 9.16.13.
2021-03-18 17:08:10 +01:00
Ludovic Courtès 94f0312546
gnu: guix: Update to ec7fb66 [security].
This updates the 'guix' package so that it provides the fix
for <https://bugs.gnu.org/47229>.

* gnu/packages/package-management.scm (guix): Update to ec7fb66.
2021-03-18 12:32:03 +01:00
Leo Famulari 898489f48e
services: Enable "protected hardlinks" and "protected symlinks" by default.
References:

https://sysctl-explorer.net/fs/protected_hardlinks/
https://sysctl-explorer.net/fs/protected_symlinks/

* gnu/services/sysctl.scm (%default-sysctl-settings): New public variable.
(<sysctl-configuration>): Use %default-sysctl-settings as the default value.
* gnu/services/base.scm (%base-services): Add sysctl-service-type.
* doc/guix.texi (Miscellaneous Services): Document the new defaults.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-18 12:17:33 +01:00
Léo Le Bouter 45695cc8a7
Revert "gnu: python2-urllib3: Update to 1.26.4 [fixes CVE-2021-28363]."
In response to commit 1a265842e6 we should no
longer need this. Also see <https://bugs.gnu.org/47186>.

This reverts commit db87d6ddaf.
2021-03-18 11:26:11 +01:00
Léo Le Bouter 2e0ff59f0c
gnu: imagemagick/fixed: Redirect old sonames to new sonames.
* gnu/packages/imagemagick.scm (imagemagick/fixed)[arguments]: Add
'fix-compat-cheat-rename-so phase to redirect old soname paths (expected
without grafting) to new sonames introduced by ImageMagick 6.9.12-0 and
later. These sonames are probably not forward compatible but most probably
backwards compatible so it should suffice until we remove the graft.
2021-03-18 11:13:18 +01:00
Leo Famulari 334c6850c6
gnu: linux-libre 4.4: Update to 4.4.262.
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.262.
(linux-libre-4.4-pristine-source): Update hash.
2021-03-18 01:05:49 -04:00
Leo Famulari c3504337cc
gnu: linux-libre 4.9: Update to 4.9.262.
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.262.
(linux-libre-4.9-pristine-source): Update hash.
2021-03-18 01:05:48 -04:00
Leo Famulari d72347deec
gnu: linux-libre 4.14: Update to 4.14.226.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.226.
(linux-libre-4.14-pristine-source): Update hash.
2021-03-18 01:05:48 -04:00
Leo Famulari 1ff0377a52
gnu: linux-libre 4.19: Update to 4.19.181.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.181.
(linux-libre-4.19-pristine-source): Update hash.
2021-03-18 01:05:48 -04:00
Leo Famulari 1de35e8036
gnu: linux-libre 5.4: Update to 5.4.106.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.106.
(linux-libre-5.4-pristine-source): Update hash.
2021-03-18 01:05:48 -04:00
Leo Famulari e0dcafc1c2
gnu: linux-libre 5.10: Update to 5.10.24.
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.24.
(linux-libre-5.10-pristine-source): Update hash.
2021-03-18 01:05:48 -04:00
Leo Famulari aacfbb8c24
gnu: linux-libre: Update to 5.11.7.
* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.7.
(linux-libre-5.11-pristine-source): Update hash.
2021-03-18 01:05:48 -04:00
qblade 966e61fb8f
gnu: Add libucl.
* gnu/packages/wm.scm (libucl): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-17 23:10:20 +01:00
Maxime Devos ce10e2b3e9
gnu: Use autoconf instead of autoconf-wrapper when possible.
This should reduce confusion on when to use the "autoconf"
package and when to use "autoconf-wrapper" instead in
package definitions.

Fixes <https://bugs.gnu.org/46564>.

* gnu/packages/autotools.scm (autoconf-wrapper):
  advise to use the "autoconf" package instead where
  possible.
* gnu/packages/game-development.scm (tsukundere)[native-inputs]:
  use "autoconf" instead of "autoconf-wrapper".
* gnu/packages/gimp.scm
  (glimpse)[native-inputs]: likewise.
  (gimp-resynthesizer)[native-inputs]: add comment on why
  "autoconf-wrapper" is used.
* gnu/packages/gnunet.scm (gnunet)[native-inputs]:
  use "autoconf" instead of "autoconf-wrapper".
* gnu/packages/gnupg.scm (signing-party)[native-inputs]:
  add comment on why "autoconf-wrapper" is used.
* gnu/packages/guile-xyz.scm
  (guile-bash,guile-filesystem,guile-ics,guile-udev)[native-inputs]:
  use "autoconf" instead of "autoconf-wrapper".
* gnu/packages/libevent.scm (libuv)[native-inputs]: indicates
  "autoconf-wrapper" needs to be replaced with "autoconf"
  on core-updates.
* gnu/packages/logging.scm (glog)[native-inputs]: use "autoconf"
  instead of "autoconf-wrapper".
* gnu/packages/mail.scm (libetpan)[native-inputs]: likewise.
* gnu/packages/mate.scm
  (mate-icon-theme-faenza)[native-inputs]: add comment on why
  "autoconf-wrapper" is used.
  (mate-screensaver)[native-inputs]: use "autoconf" instead of
  "autoconf-wrapper".
* gnu/packages/package-management.scm (guix)[native-inputs]: likewise.
* gnu/packages/sawfish.scm (librep)[native-inputs]: likewise.
* gnu/packages/video.scm (motion)[native-inputs]: likewise.
* gnu/packages/zile.scm (zile)[native-inputs]: likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-17 23:10:19 +01:00
Tobias Geerinckx-Rice 24f1ce9e71
gnu: scdoc: Cross-compile.
* gnu/packages/man.scm (scdoc)[arguments]: Use CC-FOR-TARGET.
2021-03-17 21:22:21 +01:00
Tobias Geerinckx-Rice 841e5fb4dd
gnu: scdoc: Don't use unstable tarball.
The autogenerated tarball was modified upstream.

* gnu/packages/man.scm (scdoc)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2021-03-17 21:22:20 +01:00
Christopher Baines d7b4ccefa9
gnu: libtirpc/hurd: Fix package source.
Amend the changes in 1a265842e6 to properly
access the origin patches from libtirpc.

I noticed this as guix weather didn't work for this package.

* gnu/packages/onc-rpc.scm (libtirpc/hurd)[source]: Call origin-patches
on (package-source libtirpc) rather than the libtirpc package.
2021-03-17 20:15:15 +00:00
Efraim Flashner f4f677f223
gnu: lua.scm: Sort package module imports alphabetically.
* gnu/packages/lua.scm: Sort package module imports alphabetically.
2021-03-17 21:33:01 +02:00
Léo Le Bouter 2691f57678
gnu: python-pygments: Update to 2.7.4 [fixes CVE-2021-27291].
* gnu/packages/python-xyz.scm (python-pygments/fixed): New variable.
(python-pygments)[replacement]: Graft.
2021-03-17 18:36:47 +01:00
Oleg Pykhalov cb424bad32
gnu: Add emacs-kotlin-mode.
* gnu/packages/emacs-xyz.scm (emacs-kotlin-mode): New variable.
2021-03-17 18:48:06 +03:00
Nicolas Goaziou d79d63e782
gnu: emacs-marginalia: Update to 0.4.
* gnu/packages/emacs-xyz.scm (emacs-marginalia): Update to 0.4.
2021-03-17 14:32:45 +01:00
Leo Prikler 284864df91
gnu: komikku: Update to 0.27.0.
* gnu/packages/gnome.scm (komikku): Update to 0.27.0.
[inputs]: Add python-brotli and webkitgtk.
2021-03-17 14:21:30 +01:00
Leo Prikler fef91c0cc8
gnu: Move lolcode to esolangs.
* gnu/packages/lolcode.scm (lci): Move from here...
* gnu/packages/esolangs.scm (lolcode-lci): ... to here.
* gnu/packages/lolcode.scm: Delete file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2021-03-17 14:21:29 +01:00
LibreMiami d45d779e2a
gnu: tig: Update to 2.5.3.
* gnu/packages/version-control.scm (tig): Update to 2.5.3.

Co-authored-by: jgart <jgart@dismail.de>
Co-authored-by: donotshake <donotshake:matrix.org>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-17 12:03:25 +01:00
Ludovic Courtès fe96f64110
gnu: hwloc: Add 'release-monitoring-url' property.
* gnu/packages/mpi.scm (hwloc-1)[properties]: New field.
2021-03-17 12:03:25 +01:00
Léo Le Bouter f194fbf50e
gnu: gnome-autoar: Update to 0.3.1 [fixes CVE-2021-28650].
* gnu/packages/gnome.scm (gnome-autoar): Update to 0.3.1.
2021-03-17 11:39:01 +01:00
Léo Le Bouter b26f958620
gnu: pzstd: Update to 1.4.9 [fixes CVE-2021-24032].
* gnu/packages/compression.scm (pzstd): Use 'package/inherit' over zstd so any
graft applied to zstd cascades onto pzstd which is built from the same
source.
2021-03-17 10:58:29 +01:00
Mark H Weaver 1a265842e6
gnu: Use PACKAGE/INHERIT in more places.
* gnu/packages/algebra.scm (fftwf, fftw-openmpi),
gnu/packages/audio.scm (ztoolkit-rsvg),
gnu/packages/bioinformatics.scm (python2-dendropy),
gnu/packages/boost.scm (boost-with-python2),
gnu/packages/check.scm (python2-mock, python2-pytest-mock),
gnu/packages/cups.scm (hplip-minimal),
gnu/packages/freedesktop.scm (libinput-minimal),
gnu/packages/gettext.scm (gnu-gettext),
gnu/packages/glib.scm (python2-pygobject),
gnu/packages/gnome.scm (gdl-minimal, libsoup-minimal, python2-pyatspi),
gnu/packages/groff.scm (groff-minimal),
gnu/packages/jami.scm (ffmpeg-jami),
gnu/packages/libcanberra.scm (libcanberra/gtk+-2),
gnu/packages/lirc.scm (python2-lirc),
gnu/packages/llvm.scm (clang-runtime-3.5),
gnu/packages/mpi.scm (java-openmpi, openmpi-thread-multiple),
gnu/packages/node.scm (libnode),
gnu/packages/onc-rpc.scm (libtirpc/hurd),
gnu/packages/python-compression.scm (bitshuffle-for-snappy),
gnu/packages/python-crypto.scm (python2-pycrypto, python2-cryptography)
(python2-cryptography, python2-m2crypto),
gnu/packages/python-web.scm (python2-html2text, python2-tornado)
(python2-terminado, python2-ndg-httpsclient, python2-websocket-client)
(python2-rauth, python2-url, python2-s3transfer),
gnu/packages/python-xyz.scm (python2-psutil, python2-serpent)
(python2-humanfriendly, python2-empy, python2-parse-type, python2-polib)
(python2-jsonschema, python2-pystache, python2-cython, python2-numpydoc)
(python2-ipyparallel, python2-traitlets, python2-dbus)
(python2-beautifulsoup4, python2-pep517, python2-flake8, python2-llfuse)
(python2-tlsh, python-file, python2-notebook, python-jupyter-console-minimal)
(python2-contextlib2, python2-promise, python2-anyjson, python2-amqp)
(python2-kombu, python2-billiard, python2-celery, python2-whoosh)
(python2-jellyfish, python-rope, ptpython-2, python2-binaryornot)
(python2-setproctitle, python2-argcomplete, python2-xopen, python2-isort)
(python2-radon, python2-rfc6555, python2-activepapers, python2-send2trash)
(python2-cloudpickle, python2-reparser),
gnu/packages/python.scm (python2-called-python),
gnu/packages/qt.scm (python2-sip, python-pyqt-without-qtwebkit, python2-pyqt)
(python-qscintilla, python-pyqt+qscintilla),
gnu/packages/scanner.scm (sane-backends),
gnu/packages/sdl.scm (guile3.0-sdl2),
gnu/packages/selinux.scm (checkpolicy, libselinux, libsemanage, secilc)
(python-sepolgen, policycoreutils),
gnu/packages/serialization.scm (lua5.1-libmpack, lua5.2-libmpack),
gnu/packages/simulation.scm (fenics),
gnu/packages/statistics.scm (python2-statsmodels),
gnu/packages/texinfo.scm (info-reader),
gnu/packages/wxwidgets.scm (wxwidgets-gtk2, wxwidgets-gtk2-3.1),
gnu/packages/xml.scm (xmlsec-nss),
gnu/packages/xorg.scm (uim-gtk, uim-qt),
guix/build-system/python.scm (package-with-explicit-python)
(strip-python2-variant): Use PACKAGE/INHERIT.
2021-03-17 03:58:10 -04:00
Mark H Weaver d9f501b619
gnu: gvfs: Add 'lint-hidden-cve' property.
* gnu/packages/gnome.scm (gvfs)[properties]: New field, marking
CVE-2019-12447, CVE-2019-12448, and CVE-2019-12449 as fixed.
2021-03-16 22:38:18 -04:00
Mark H Weaver c3fe23d0de
gnu: gnome-shell: Add 'lint-hidden-cve' property.
* gnu/packages/gnome.scm (gnome-shell)[properties]: New field, marking
CVE-2019-3820 as fixed.
2021-03-16 22:38:12 -04:00
Maxim Cournoyer 15423d38c5
gnu: qemu: Enable reproducible builds.
Fixes <https://issues.guix.gnu.org/47176>.  The solution was suggested by
bonzini on OFTC's #qemu channel.

* gnu/packages/virtualization.scm (qemu)[snippet]: Delete bundled meson copy.
[native-inputs]: Add meson-next.
2021-03-16 16:21:28 -04:00
Maxim Cournoyer f4259f93ea
gnu: Add meson-next.
* gnu/packages/build-tools.scm (meson-next): New variable.
2021-03-16 16:21:27 -04:00
Kei Kebreau 109f58444b
gnu: mpg321: Fix CVE-2019-14247.
* gnu/packages/patches/mpg321-CVE-2019-14247.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/mp3.scm (mpg321)[source]: Apply it.

Signed-off-by: Léo Le Bouter <lle-bout@zaclys.net>
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-03-16 19:12:36 +01:00
Léo Le Bouter 82a9538ea0
gnu: varnish-modules: Update to 0.17.1 [fixes CVE-2021-28543].
* gnu/packages/web.scm (varnish-modules): Update to 0.17.1.
2021-03-16 18:41:41 +01:00
Efraim Flashner 09b5cdf80d
gnu: tor: Update to 0.4.5.7 [security fixes].
* gnu/packages/tor.scm (tor): Update to 0.4.5.7.
2021-03-16 15:26:33 +02:00
Ricardo Wurmus 4f02c4c4a9
gnu: snakemake: Add missing inputs.
* gnu/packages/python-xyz.scm (snakemake)[propagated-inputs]: Add
python-nbformat, python-pulp, and python-toposort.
2021-03-16 14:17:48 +01:00
Ricardo Wurmus 08447ab7cd
gnu: Add python-toposort.
* gnu/packages/python-xyz.scm (python-toposort): New variable.
2021-03-16 14:17:48 +01:00
Ricardo Wurmus fa0a18522d
gnu: Add python-pulp.
* gnu/packages/python-xyz.scm (python-pulp): New variable.
2021-03-16 14:17:47 +01:00
Ricardo Wurmus c9006a0ee1
gnu: Add python-amply.
* gnu/packages/python-xyz.scm (python-amply): New variable.
2021-03-16 14:17:47 +01:00
Nicolas Goaziou 55ef497479
gnu: emacs-easy-kill: Update to 0.9.4.
* gnu/packages/emacs-xyz.scm (emacs-easy-kill): Update to 0.9.4.
2021-03-16 14:11:14 +01:00
Nicolas Goaziou 2724f1b231
gnu: emacs-leaf: Update to 4.4.0.
* gnu/packages/emacs-xyz.scm (emacs-leaf): Update to 4.4.0.
2021-03-16 14:10:17 +01:00
Nicolas Goaziou c954f795f9
gnu: python-pikepdf: Update to 2.9.0.
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.9.0.
2021-03-16 14:09:06 +01:00
Nicolas Goaziou 335af327cd
gnu: asymptote: Update to 2.70.
* gnu/packages/plotutils.scm (asymptote): Update to 2.70.
2021-03-16 14:06:40 +01:00
Efraim Flashner 451f23df5e
gnu: b4: Fix setup.py version incompatibility.
* gnu/packages/version-control.scm (b4)[source]: Add snippet to not
require too specific of a version.

Reported-by: Kyle Meyer <kyle@kyleam.com>
2021-03-16 14:28:25 +02:00
Maxim Cournoyer 9bab0950f7
gnu: libmemcached: Disable test suite.
* gnu/packages/databases.scm (libmemcached): Disable test suite.  Removing
trailing #t.
[phases]{fix-configure}: Remove useless group in pattern.
{disable-failing-tests}: Remove phase.
{build-and-install-html-doc}: Order after the build phase.
[home-page]: Please 'guix lint'.

Reported-by: Simon Tournier <zimon.toutoune@gmail.com>
2021-03-16 07:46:20 -04:00
Ricardo Wurmus fcf8c6c565
gnu: hisat2: Update to 2.2.1.
* gnu/packages/bioinformatics.scm (hisat2): Update to 2.2.1.
[source]: Fetch from git repository on Github.
[arguments]: Add phase to build manual; remove trailing #t from other phases.
[native-inputs]: Remove unzip.
[home-page]: Update.
[inputs]: Add python-wrapper.
2021-03-16 11:12:01 +01:00
Léo Le Bouter 097cf21d1d
gnu: Remove MongoDB.
mongodb 3.4.10 has unpatched CVEs and mongodb 3.4.24 has some files in the
release tarball under the SSPL, therefore we cannot provide mongodb while
upholding to good security standards.

It turns out feff80cec3 was right since while
the main license file wasnt altered to SSPL, some files in the tree contain
SSPL headers.

* gnu/packages/databases.scm (go-gopkg.in-mgo.v2): Remove.
* gnu/packages/databases.scm (mongo-tools): Remove.
* doc/guix.texi (mongodb-service-type): Remove.
* gnu/tests/databases.scm (%test-mongodb, %mongodb-os, run-mongodb-test):
Remove.
* gnu/services/databases.scm (mongodb-configuration, mongodb-configuration?,
mongodb-configuration-mongodb, mongodb-configuration-config-file,
mongodb-configuration-data-directory, mongodb-service-type,
%default-mongodb-configuration-file, %mongodb-accounts, mongodb-activation,
mongodb-shepherd-service): Remove.
* gnu/packages/databases.scm (mongodb): Remove.
2021-03-16 11:05:24 +01:00
Léo Le Bouter 0ee5d4f7a8
gnu: git: Fix git-manpages native input's hash.
This is a follow-up to commit ab9629b7c9.

* gnu/packages/version-control.scm (git)[native-inputs]: Fix git-manpages's
hash.
2021-03-16 10:58:36 +01:00
Léo Le Bouter ab9629b7c9
gnu: git: Update to 2.31.0.
* gnu/packages/version-control.scm (git): Update to 2.31.0.
2021-03-16 10:52:11 +01:00
Léo Le Bouter db87d6ddaf
gnu: python2-urllib3: Update to 1.26.4 [fixes CVE-2021-28363].
* gnu/packages/python-web.scm (python2-urllib3)[base]: Base off of
python-urllib3/fixed.
2021-03-16 09:25:02 +01:00
Léo Le Bouter a01bfa7dee
gnu: python-urllib3: Update to 1.26.4 [fixes CVE-2021-28363].
* gnu/packages/python-web.scm (python-urllib3/fixed): New variable.
(python-urllib3)[replacement]: Graft.
2021-03-16 08:59:38 +01:00
Stefan Reichör e5fcfb82e0
gnu: tmsu: Improve installation.
* gnu/packages/file-systems.scm (tmsu)[arguments]: Don't install go
source files. Install binary as tmsu instead of TMSU.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-16 09:37:16 +02:00
Stefan Reichör 3679286bb4
gnu: glances: Update to 3.1.6.
* gnu/packages/python-xyz.scm (glances): Update to 3.1.6.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-16 09:34:41 +02:00
Leo Famulari 8ec0ca8faf
Revert some commits that caused `guix pull` to fail.
This reverts commits 821e643921 through
8f9fd9b70c.

Specifically, these commits caused the build failure of
guix-package-cache.drv like this:

------
(repl-version 0 1 1)
Generating package cache for '/gnu/store/vyz7q26kxxd4z70m24rkkqqhaizdla7g-profile'...
(exception unbound-variable (value #f) (value "Unbound variable: ~S") (value (r-biobase)) (value #f))
2021-03-15 19:52:34 -04:00
Ricardo Wurmus 8f9fd9b70c
gnu: r-biocparallel: Build reproducibly.
* gnu/packages/bioconductor.scm (r-biocparallel)[arguments]: Add phase
"make-reproducible".
2021-03-15 23:31:58 +01:00
zimoun d99a18252c
gnu: r-delayedarray: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-delayedarray): Move from here...
* gnu/packages/bioconductor.scm (r-delayedarray): ...to here.
2021-03-15 23:30:26 +01:00
zimoun adf45daae9
gnu: r-rsamtools: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-rsamtools): Move from here...
* gnu/packages/bioconductor.scm (r-rsamtools): ...to here.
2021-03-15 23:30:26 +01:00
zimoun b1a19ab6e2
gnu: r-biostrings: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-biostrings): Move from here...
* gnu/packages/bioconductor.scm (r-biostrings): ...to here.
2021-03-15 23:30:26 +01:00
zimoun eab9807fb3
gnu: r-biocparallel: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-biocparallel): Move from here...
* gnu/packages/bioconductor.scm (r-biocparallel): ...to here.
2021-03-15 23:30:26 +01:00
zimoun c11b541fba
gnu: r-biomart: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-biomart): Move from here...
* gnu/packages/bioconductor.scm (r-biomart): ...to here.
2021-03-15 23:30:26 +01:00
zimoun 16c7e79ebb
gnu: r-annotationdbi: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-annotationdbi): Move from here...
* gnu/packages/bioconductor.scm (r-annotationdbi): ...to here.
2021-03-15 23:30:26 +01:00
zimoun 457de7f401
gnu: r-biobase: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-biobase): Move from here...
* gnu/packages/bioconductor.scm (r-biobase): ...to here.
2021-03-15 23:30:26 +01:00
zimoun f3f09b99cd
gnu: r-genomicranges: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-genomicranges): Move from here...
* gnu/packages/bioconductor.scm (r-genomicranges): ...to here.
2021-03-15 23:30:26 +01:00
zimoun e56b3db82e
gnu: r-xvector: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-xvector): Move from here...
* gnu/packages/bioconductor.scm (r-xvector): ...to here.
2021-03-15 23:30:26 +01:00
zimoun 821e643921
gnu: r-limma: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-limma): Move from here...
* gnu/packages/bioconductor.scm (r-limma): ...to here.
2021-03-15 23:30:26 +01:00
Maxim Cournoyer 74fdd0fea0
gnu: dbus-c++: Fix command name in description.
* gnu/packages/glib.scm (dbus-c++)[description]: Fix command prefix in
description, and mention the second command installed as well.
2021-03-15 18:03:17 -04:00
Leo Famulari d15fdb66f3
gnu: qemu: Update to 5.2.0.
* gnu/packages/virtualization.scm (qemu): Update to 5.2.0.
[source]: Re-indent and break long lines, to appease 'guix lint'.
[arguments]{disable-unusable-tests}: Adjust for the new Meson build
system.  Remove patching for a test workaround that has been resolved in
5.2.0.
{patch-test-shebangs, patch-/bin/sh-references}: Combine into...
{patch-embedded-shebangs}: ... this new phase.  Patch the SHELL variable in
the Makefile.
{fix-optionrom-makefile}: New phase.
{install-user-static}: Adjust as the binaries are now symbolic links pointing to their
actual build path.
[native-inputs]: Add ninja.
* gnu/packages/patches/qemu-build-info-manual.patch: Update patch.

Co-authored-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-15 18:00:35 -04:00
Maxim Cournoyer 77c2f4e206
services/qemu-binfmt: Use the F flag and the static output of QEMU.
Fixes <https://issues.guix.gnu.org/36117>.

Before this change, the 'binfmt_misc' entries registered for QEMU would not be
usable in container contexts outside of guix-daemon (without manually bind
mounting file names).

For example:

$ docker run --rm arm32v7/debian true
standard_init_linux.go:207: exec user process caused "no such file or directory"

After this change, any container can make use of the QEMU binfmt_misc
registrations, as their corresponding QEMU static binaries are fully
pre-loaded by the kernel.

* gnu/services/virtualization.scm (<qemu-platform>): Define using
'define-record-type*'.
[flags]: New field, which defaults to "F" (fix binary).
(%i386, %i486, %alpha, %arm, %armeb, %sparc, %sparc32plus, %ppc, %ppc64)
(%ppc64le, %m68k, %mips, %mipsel, %mipsn32, %mipsn32el, %mips64, %mips64el)
(%riscv32, %riscv64, %sh4, %sh4eb, %s390x, %aarch64, %hppa): Adjust.
(qemu-binfmt-guix-chroot): Remove variable.
(qemu-binfmt-service-type): Remove the qemu-binfmt-guix-chroot extension.
* gnu/services/qemu-binfmt (qemu-platform->binfmt):  Use the static output of
QEMU.
* doc/contributing.texi (Submitting Patches): Update doc.
* doc/guix.texi (Virtualization Services): Update doc.
2021-03-15 18:00:35 -04:00
Maxim Cournoyer d184fd4216
gnu: qemu: Add a static output.
The static output is equivalent to what other distributions commonly package
as 'qemu-user-static'.

* gnu/packages/virtualization.scm (qemu)[outputs]: Add a static output.
[phases]{configure}: Configure the main build as an out-of-source build.  Move
all configure flags to ...
[configure-flags]: ... here.  The options explicitly enabling optional
features are removed; the configure script does a good job at enabling all the
features available based on the inputs present and this allows reusing the
flags in variant packages such as qemu-minimal.
{configure-user-static, build-user-static, install-user-static}: New phases.
{patch-test-shebangs}: New phase, extracted from the configure phase.
[native-inputs]: Add glib-static, pcre:static and zlib:static.
(qemu-minimal)[arguments]: Reuse the configure-flags argument.  Rewrite to use
match instead of cond.
2021-03-15 18:00:35 -04:00
Maxim Cournoyer ce29866c01
gnu: Add glib-static.
* gnu/packages/glib.scm (glib-static): New variable.
2021-03-15 18:00:35 -04:00
Maxim Cournoyer 3fe46eef57
gnu: qemu: Fix indentation and remove trailing #t.
* gnu/packages/virtualization.scm (qemu): Fix indentation and remove
trailing #t, appeasing 'guix lint'.
2021-03-15 18:00:34 -04:00
Ricardo Wurmus 29e992c030
gnu: r-seurat: Fix build.
This is a follow-up to commit e4d4046999

* gnu/packages/cran.scm (r-seurat)[arguments]: Patch NAMESPACE file.
2021-03-15 22:06:57 +01:00
Tobias Geerinckx-Rice fcb122b4ed
gnu: xterm: Fix uxterm in pure environments.
* gnu/packages/xorg.scm (xterm)[arguments]: Add a 'patch-file-names
phase.
2021-03-15 20:31:24 +01:00
Tobias Geerinckx-Rice 20d090f435
gnu: sudo: Update to 1.9.6p1.
* gnu/packages/admin.scm (sudo): Update to 1.9.6p1.
2021-03-15 20:31:24 +01:00
Ricardo Wurmus 266d55dc30
gnu: ibus-libpinyin: Update to 1.12.0.
* gnu/packages/ibus.scm (ibus-libpinyin): Update to 1.12.0.
[arguments]: Enable opencc; include setup files on PYTHONPATH; override
PYTHONPATH instead of prefixing.
[inputs]: Add opencc; remove python-pyxdg.
[license]: Change to GPLv3+.
2021-03-15 15:24:01 +01:00
Ricardo Wurmus f9e016baec
gnu: libpinyin: Update to 2.6.0.
* gnu/packages/ibus.scm (libpinyin): Update to 2.6.0.
2021-03-15 15:23:50 +01:00
Ricardo Wurmus 14204d696c
gnu: r-genomicfeatures: Update to 1.42.2.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.42.2.
2021-03-15 15:03:08 +01:00
Ricardo Wurmus f10f2745eb
gnu: r-delayedarray: Update to 0.16.2.
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.16.2.
2021-03-15 15:03:08 +01:00
Ricardo Wurmus 1ada8ea96c
gnu: r-scater: Update to 1.18.6.
* gnu/packages/bioconductor.scm (r-scater): Update to 1.18.6.
2021-03-15 15:03:08 +01:00
Ricardo Wurmus fa6bb614c8
gnu: r-cytoml: Update to 2.2.2.
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.2.2.
[inputs]: Add zlib.
2021-03-15 15:03:08 +01:00
Ricardo Wurmus 11dc49afc2
gnu: r-diffbind: Update to 3.0.14.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.14.
2021-03-15 15:03:07 +01:00
Ricardo Wurmus ee61edb621
gnu: r-reportingtools: Update to 2.30.2.
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.30.2.
2021-03-15 15:03:07 +01:00
Ricardo Wurmus fa227c9640
gnu: r-genomeinfodb: Update to 1.26.4.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.26.4.
2021-03-15 15:03:07 +01:00
Ricardo Wurmus b45c625f10
gnu: r-deseq2: Update to 1.30.1.
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.30.1.
2021-03-15 15:03:07 +01:00
Efraim Flashner 4ce712aca4
gnu: alacritty: Use more packaged rust libraries.
* gnu/packages/terminals.scm (alacritty)[arguments]: Move
rust-bitflags-1, rust-dirs-2, rust-libc-0.2, rust-unicode-width-0.1,
rust-winapi-0.3 from cargo-inputs ...
[inputs]: ... to here.
2021-03-15 15:53:17 +02:00
Efraim Flashner ca3b97baaa
gnu: rust-dirs-2: Adapt for new build system.
* gnu/packages/crates-io.scm (rust-dirs-2)[inputs]: Add rust-cfg-if-0.1,
rust-dirs-sys-0.3.
2021-03-15 15:53:17 +02:00
Efraim Flashner a4bbebb2b3
gnu: rust-dirs-sys-0.3: Adapt for new build system.
* gnu/packages/crates-io.scm (rust-dirs-sys-0.3)[inputs]: Add
rust-cfg-if-0.1, rust-libc-0.2, rust-redox-users-0.3, rust-winapi-0.3.
2021-03-15 15:53:17 +02:00
Efraim Flashner 647dfa788e
gnu: rust-lazy-static-1: Adapt for new build system.
* gnu/packages/crates-io.scm (rust-lazy-static-1)[inputs]: Add
rust-spin-0.5.
2021-03-15 15:53:16 +02:00
Efraim Flashner f69a3fe28c
gnu: alacritty: Use packaged rust-wayland-client.
* gnu/packages/terminals.scm (alacritty)[arguments]: Remove
rust-wayland-client-0.28 from cargo-inputs. In custom
'add-absolute-library-references remove substitutions for
rust-wayland-client.
[inputs]: Add rust-wayland-client-0.28.
2021-03-15 15:53:16 +02:00
Efraim Flashner 190e94b278
gnu: rust-glutin-0.26: Adapt for new build system.
* gnu/packages/crates-graphics.scm (rust-glutin-0.26)
[arguments]: Don't skip build. Remove rust-wayland-client-0.28 from
cargo-inputs.
[inputs]: Add rust-wayland-client-0.28, rust-wayland-egl-0.28.
2021-03-15 15:53:16 +02:00
Efraim Flashner 87d747860d
gnu: rust-winit-0.24: Adapt for new build system.
* gnu/packages/crates-graphics.scm (rust-winit-0.24)[arguments]: Move
rust-wayland-client-0.28 from cargo-inputs ...
[inputs]: ... to here.
2021-03-15 15:53:16 +02:00
Efraim Flashner 6f655caf42
gnu: rust-wayland-server-0.28: Adapt for new build system.
* gnu/packages/crates-graphics.scm (rust-wayland-server-0.28)
[arguments]: Don't skip build. Remove rust-wayland-commons-0.28,
rust-wayland-scanner-0.28, rust-wayland-sys-0.28 from cargo-inputs.
[inputs]: Add rust-bitflags-1, rust-downcast-rs-1, rust-lazy-static-1,
rust-libc-0.2, rust-nix-0.18, rust-parking-lot-0.18, rust-scoped-tls-1,
rust-wayland-commons-0.28, rust-wayland-scanner-0.28,
rust-wayland-sys-0.28.
(rust-wayland-server-0.23): Adjust accordingly.
2021-03-15 15:53:16 +02:00
Efraim Flashner fb6f926193
gnu: rust-wayland-scanner-0.28: Adapt for new build system.
* gnu/packages/crates-graphics.scm (rust-wayland-scanner-0.28):
[arguments]: Don't skip build. Remove cargo-inputs.
[inputs]: Add rust-proc-macro2-1, rust-quote-1, rust-xml-rs-0.8.
(rust-wayland-scanner-0.23): Adjust accordingly.
2021-03-15 15:53:16 +02:00
Efraim Flashner facf27e08b
gnu: rust-wayland-protocols-0.28: Adapt for new build system.
* gnu/packages/crates-graphics.scm (rust-wayland-protocols-0.28)
[arguments]: Don't skip build. Remove everything from cargo-inputs
except rust-bitflags-1.
[inputs]: Add rust-bitflags-1, rust-wayland-client-0.28,
rust-wayland-commons-0.28, rust-wayland-scanner-0.28,
rust-wayland-server-0.28.
(rust-wayland-protocols-0.23): Adjust accordingly.
2021-03-15 15:53:16 +02:00
Efraim Flashner bb06a747b2
gnu: rust-wayland-egl-0.28: Adapt for new build system.
* gnu/packages/crates-graphics.scm (rust-wayland-egl-0.28)
[arguments]: Don't skip build. Remove cargo-inputs.
[inputs]: Add rust-wayland-client-0.28, rust-wayland-sys-0.28.
[native-inputs]: Add pkg-config.
2021-03-15 15:53:15 +02:00
Efraim Flashner 3b6ec859c2
gnu: rust-wayland-cursor-0.28: Adapt for new build system.
* gnu/packages/crates-graphics.scm (rust-wayland-cursor-0.28)
[arguments]: Don't skip build. Remove rust-wayland-client-0.28 from
cargo-inputs.
[inputs]: Add rust-nix-0.18, rust-wayland-client-0.28, rust-xcursor-0.3.
2021-03-15 15:53:15 +02:00
Efraim Flashner 770e326fdb
gnu: rust-wayland-client-0.28: Adapt for new build system.
* gnu/packages/crates-graphics.scm (rust-wayland-client-0.28)
[arguments]: Don't skip build. Remove rust-wayland-commons-0.28,
rust-wayland-scanner-0.28, rust-wayland-sys-0.28 from cargo-inputs.
[inputs]: Add rust-bitflags-1, rust-downcast-rs-1, rust-libc-0.2,
rust-nix-0.18, rust-scoped-tls-1, rust-wayland-commons-0.28,
rust-wayland-scanner-0.28, rust-wayland-sys-0.28.
(rust-wayland-client-0.23): Adjust accordingly.
2021-03-15 15:53:15 +02:00
Efraim Flashner f35ab79e03
gnu: rust-wayland-commons-0.28: Adapt for new build system.
* gnu/packages/crates-graphics.scm (rust-wayland-commons-0.28)
[arguments]: Don't skip build. Remove rust-wayland-sys-0.28 from
cargo-inputs.
[inputs]: Add rust-nix-0.18, rust-once-cell-1, rust-smallvec-1,
rust-wayland-sys-0.28.
(rust-wayland-commons-0.23): Adjust accordingly.
2021-03-15 15:53:15 +02:00
Efraim Flashner b10c637e48
gnu: rust-libloading-0.6: Update to 0.6.7.
* gnu/packages/crates-io.scm (rust-libloading-0.6): Update to 0.6.
[arguments]: Replace rust-cfg-if-0.1 with 1.
[inputs]: Add rust-cfg-if-1, rust-winapi-0.3.
2021-03-15 15:53:15 +02:00
Efraim Flashner bafeee4f6d
gnu: dlib-0.4: Update to 0.4.2.
* gnu/packages/crates-io.scm (rust-dlib-0.4): Update to 0.4.2.
[arguments]: Replace rust-libloading-0.5 with 0.6.
[inputs]: Add rust-libloading-0.6.
2021-03-15 15:53:15 +02:00