f1df119224
gnu: gnuradio-osmosdr: Update to 0.2.3-0.a100eb0.
...
* gnu/packages/radio.scm (gnuradio-osmosdr): Update to 0.2.3-0.a100eb0.
[native-inputs]: Replace swig by pybind11.
[inputs]: Add libsndfile.
2021-03-24 11:56:32 +01:00
50e33007a5
gnu: gnuradio-iqbalance: Update to 0.38.2-0.fbee239.
...
* gnu/packages/radio.scm (gnuradio-iqbalance): Update to 0.38.2-0.fbee239.
[native-inputs]: Replace swig by pybind11.
2021-03-24 11:54:03 +01:00
d3e7f1eeac
gnu: gnuradio: Add missing inputs.
...
* gnu/packages/radio.scm (gnuradio)[native-inputs]: Add js-mathjax.
[inputs]: Add libsndfile.
[arguments]: Add 'configure-flags' to find mathjax.
2021-03-24 11:54:03 +01:00
083809229b
gnu: gnuradio: Update to 3.9.0.0.
...
* gnu/packages/radio.scm (gnuradio): Update to 3.9.0.0.
[source]: Remove snippet deleting the included copy of volk,
as it is not included anymore.
[native-inputs]: Replace swig with pybind11.
[inputs]: Add sdl (for dtv).
[arguments]: Remove 'configure-flags". Disable broken tests.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-03-24 10:00:03 +01:00
65c46e79e0
gnu: sed: Make it build on SELinux-enabled kernels.
...
Fixes: <https://bugs.gnu.org/41498 >.
* gnu/packages/base.scm (sed)[arguments]: New field. This adds a
snippet, equivalent to the patch submitted upstream, which fixes an
issue that prevents sed from building on SELinux-enabled kernels.
Adjusted by Efraim Flashner to apply to master.
2021-03-23 23:19:58 -07:00
8d9aece8c4
ci: %cross-targets: Add powerpc64le-linux-gnu.
...
* gnu/ci.scm (%cross-targets): Add an entry for powerpc64le-linux-gnu.
2021-03-23 23:19:58 -07:00
b50f426803
gnu: libelf: Fix compilation for powerpc64le-linux.
...
* gnu/packages/elf.scm (libelf)[arguments]: Modify replacement 'configure phase
to invoke "./configure" with "--host=powerpc64le-unknown-linux-gnu" on
powerpc64le-linux.
Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
2021-03-23 23:19:57 -07:00
1a0f4013d3
gnu: texlive-latex-base: Fix compilation on powerpc64le*.
...
* gnu/packages/tex.scm (texlive-latex-base)[arguments]: LuaJIT is not ported to
powerpc64le* yet. Update replacement 'build phase to add "luajittex" within the
"disabled-formats" list on powerpc64le*.
Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
2021-03-23 23:19:57 -07:00
e9938dc8f0
gnu: texlive-bin: Fix compilation on powerpc64le*.
...
* gnu/packages/tex.scm (texlive-bin)[arguments]: Append "--disable-luajittex"
and "--disable-mfluajit" to keyword argument "#:configure-flags" on
powerpc64le* because LuaJIT is not ported to powerpc64le* yet. Also set
"#:tests?" to "#f" on powerpc64le*.
Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
2021-03-23 23:19:57 -07:00
69b3907adf
gnu: guile-avahi: Fix compilation on powerpc64le-linux.
...
* gnu/packages/guile-xyz.scm (guile-avahi)[arguments]: Parallel builds fail on
powerpc64le-linux. Set "#:parallel-build?" to "#f".
Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
2021-03-23 23:19:56 -07:00
4cc2d2aa59
gnu: bdb-4.8: Fix configure on powerpc64le-linux.
...
* gnu/packages/dbm.scm (bdb-4.8)[arguments]: Modify 'configure phase to append
"--build=powerpc64le-unknown-linux-gnu" to configure's flags when compiling for
powerpc64le-linux.
Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
2021-03-23 23:19:56 -07:00
be4b1cf53b
gnu: binutils-final: Support more Power architectures.
...
* gnu/packages/commencement.scm (binutils-final)[arguments]: When checking if
the system is a Power architecture, instead of hard-coding "powerpc-linux",
use the target-powerpc? procedure so it works on more Power architectures.
[inputs]: Likewise.
2021-03-23 23:19:56 -07:00
060478c32c
gnu: binutils-final: Provide bash for binary on powerpc-linux.
...
* gnu/packages/commencement.scm (binutils-final)[arguments]: On
powerpc-linux allow a reference to static-bash-for-glibc.
[inputs]: On powerpc-linux add static-bash-for-glibc.
2021-03-23 23:19:56 -07:00
b2135b5d57
gnu: gcc-boot0: Enable 128-bit long double for POWER9.
...
* gnu/packages/commencement.scm (gcc-boot0) [#:configure-flags]: Add
--with-long-double-128 when the boot triplet is "powerpc64le-guix-linux-gnu",
instead of "powerpc64le-linux-gnu", which is incorrect. The actual triplet
used during bootstrapping is "powerpc64le-guix-linux-gnu".
2021-03-23 23:19:56 -07:00
6e98e9ca92
gnu: glibc: Fix ldd path on powerpc*.
...
This should avoid some problems, such as "not a dynamic executable" errors.
* gnu/packages/patches/glibc-ldd-powerpc.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/base.scm: (glibc)[native-inputs]: Add it.
[arguments]: When building for powerpc* apply it.
* gnu/packages/commencement.scm (glibc-final-with-bootstrap-bash,
glibc-final)[native-inputs]: Add patch conditionally.
This patch has been adjusted to apply to master.
Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-23 23:19:55 -07:00
cac88b28b8
gnu: gcc-4.7: On powerpc64le, fix /lib64 references.
...
Fixes: <https://bugs.gnu.org/46253 >.
* gnu/packages/gcc.scm (gcc-4.7)[#:phases][pre-configure]: When the
gcc/config/rs6000 directory exists, replace "/lib64" with "/lib" in all files
within it. Note that this fix will be picked up by any package that re-uses
the pre-configure phase from gcc-4.7 (e.g., all the usual gcc packages).
(make-libstdc++)[#:phases][fix-rs6000-libdir]: New phase, which does the same
as above. It was necessary to duplicate the fix here because make-libstdc++
does not re-use the pre-configure phase from gcc-4.7.
2021-03-23 23:19:55 -07:00
8a1118a96c
gnu: bootstrap: Add support for powerpc64le-linux.
...
The bootstrap tarballs used by these bootstrap packages were created via the
following steps:
- Create a new x86_64 VM using QEMU.
- Use
https://ftp.gnu.org/gnu/guix/guix-system-install-1.2.0.x86_64-linux.iso.xz
to install Guix System 1.2.0 in the VM.
- Run: guix pull --no-substitutes --commit=662e7e28d576ada91fc9dec7d27c100666114f03
- Run: guix build --no-substitutes --target=powerpc64le-linux-gnu bootstrap-tarballs
With the exception of gcc-static, all bootstrap binaries contained in these
tarballs can be built reproducibly. Unfortunately, gcc-static is not always
reproducible when everything is built from source on separate machines.
Despite investigation efforts, the cause remains unclear, so we have decided
to move forward with these binaries to unblock further bootstrapping work.
For details, see <https://bugs.gnu.org/41669 >.
* gnu/packages/bootstrap.scm (%bootstrap-executables)
(bootstrap-executable-file-name, bootstrap-guile-url-path)
(bootstrap-guile-hash, %bootstrap-coreutils&co, %bootstrap-binutils)
(%bootstrap-glibc, %bootstrap-gcc): Add entries for powerpc64le-linux.
(%bootstrap-executable-base-urls): Add an entry for alpha.gnu.org.
2021-03-23 23:19:53 -07:00
dc68018e01
gnu: Add cbonsai.
...
* gnu/packages/toys.scm (cbonsai): New variable.
2021-03-24 02:03:30 -04:00
c2a9b05f02
gnu: bcunit: Update to 3.0.2-0.74021cc and enable more features.
...
* gnu/packages/linphone.scm (bcunit)[source]: Switch to git repository.
[version]: Update to 3.0.2-0.74021cc.
[outputs]: Add a "doc" output.
[arguments]: Remove the tests? argument, enabling tests.
[configure-flags]: Enable curses, doc, examples, tests and memtrace.
[phases]{patch-source, move-doc}: New phases.
{check}: Override phase.
[inputs]: Add ncurses.
[description]: Fix typo.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-24 00:05:38 -04:00
c221d49510
gnu: Add libdecaf.
...
* gnu/packages/crypto.scm (libdecaf): New variable.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 22:24:27 -04:00
d0429747de
gnu: python2-widgetsnbextension: Remove package.
...
* gnu/packages/python-xyz.scm (python2-widgetsnbextension): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:06 -04:00
d8402031af
gnu: python2-utils: Remove package.
...
* gnu/packages/python-xyz.scm (python2-utils): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:06 -04:00
82c772a774
gnu: python2-tables: Remove package.
...
* gnu/packages/python-xyz.scm (python2-tables): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:06 -04:00
97f4fd8a74
gnu: python2-stem: Remove package.
...
* gnu/packages/python-xyz.scm (python2-stem): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:05 -04:00
f68dbdadba
gnu: python2-sh: Remove package.
...
* gnu/packages/python-xyz.scm (python2-sh): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:05 -04:00
7c03695a24
gnu: python2-mpd2: Remove package.
...
* gnu/packages/mpd.scm (python2-mpd2): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:05 -04:00
c74c4377b3
gnu: python2-rq: Remove package.
...
* gnu/packages/databases.scm (python2-rq): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:05 -04:00
84950c0d06
gnu: python2-nbxmpp: Remove package.
...
* gnu/packages/messaging.scm (python2-nbxmpp): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:05 -04:00
f72d345e44
gnu: python2-mutagen: Remove package.
...
* gnu/packages/music.scm (python2-mutagen): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:05 -04:00
4c726e0698
gnu: python2-ipywidgets: Remove package.
...
* gnu/packages/python-xyz.scm (python2-ipywidgets): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:05 -04:00
5f3411e401
gnu: python2-graphql-core: Remove package.
...
* gnu/packages/python-xyz.scm (python2-graphql-core): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:04 -04:00
ec2384b79d
gnu: python2-furl: Remove package.
...
* gnu/packages/python-web.scm (python2-furl): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:04 -04:00
bce0165f7c
gnu: python2-flask: Remove package.
...
* gnu/packages/python-web.scm (python2-flask): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:04 -04:00
7502c13895
gnu: python2-httpbin: Remove package.
...
* gnu/packages/web.scm (python2-httpbin): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:04 -04:00
dab3c57d58
gnu: python2-flask-multistatic: Remove package.
...
* gnu/packages/python-web.scm (python2-flask-multistatic): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:04 -04:00
f44917ea55
gnu: python2-flask-login: Remove package.
...
* gnu/packages/python-web.scm (python2-flask-login): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:04 -04:00
d1e421ca0d
gnu: python2-flask-htmlmin: Remove package.
...
* gnu/packages/python-web.scm (python2-flask-htmlmin): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:38:04 -04:00
ec1a9c61e7
gnu: python2-flask-babel: Remove package.
...
* gnu/packages/python-web.scm (python2-flask-babel): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:37:56 -04:00
d201983475
gnu: python2-flask-wtf: Remove package.
...
* gnu/packages/python-web.scm (python2-flask-wtf): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:33:20 -04:00
b5bae212d6
gnu: python2-fido2: Remove package.
...
* gnu/packages/security-token.scm (python2-fido2): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:33:20 -04:00
9541682c79
gnu: python2-yubikey-manager: Remove package.
...
* gnu/packages/security-token.scm (python2-yubikey-manager): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:33:20 -04:00
6a098614b8
gnu: python2-dulwich: Remove package.
...
* gnu/packages/python-xyz.scm (python2-dulwich): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:33:20 -04:00
6bafc5cf1e
gnu: python2-cairocffi: Remove.
...
* gnu/packages/python-xyz.scm (python2-cairocffi): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:33:19 -04:00
f21da33255
gnu: python2-arrow: Remove package.
...
* gnu/packages/time.scm (python2-arrow): Delete.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23 21:33:19 -04:00
8b2b546396
gnu: java-xstream: Update to 1.4.16 [security fixes].
...
Fixes CVE-2021-21341, CVE-2021-21342, CVE-2021-21343, CVE-2021-21344,
CVE-2021-21345, CVE-2021-21346, CVE-2021-21347, CVE-2021-21348,
CVE-2021-21349, CVE-2021-21350 and CVE-2021-21351.
* gnu/packages/xml.scm (java-xstream): Update to 1.4.16.
[inputs]: Add java-mxparser, a fork of java-xpp3 made by upstream.
Java-xpp3 is still needed.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-03-23 23:29:14 +01:00
08b9e0ca0b
gnu: Add java-mxparser.
...
* gnu/packages/xml.scm (java-mxparser): New variable.
Co-Authored-By: Julien Lepiller <julien@lepiller.eu>
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-03-23 23:29:07 +01:00
4490dff98c
gnu: Add java-xmlpull-api-v1.
...
* gnu/packages/xml.scm (java-xmlpull-api-v1): New variable.
2021-03-23 23:28:54 +01:00
d3c8aa3f82
gnu: bitcoin-core: Add 0.21.0.
...
* gnu/packages/finance.scm (bitcoin-core): Rename to …
(bitcoin-core-0.21): … this, and update to 0.21.
(bitcoin-core-0.20): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2021-03-23 21:44:22 +00:00
aa13529baf
gnu: Add snapcast.
...
* gnu/packages/audio.scm (snapcast): New variable.
2021-03-23 21:11:34 +00:00
042b2eb1ae
gnu: parallel: Update to 20210322.
...
* gnu/packages/parallel.scm (parallel): Update to 20210322.
2021-03-23 21:08:15 +01:00
ea27cbe113
gnu: skim: Update to 0.9.4.
...
* gnu/packages/crates-io.scm (skim): Update to 0.9.4.
[arguments]: Update #:cargo-inputs: add rust-atty-0.2 and update
rust-beef-0.4 to rust-beef-0.5, rust-crossbeam-0.7 to
rust-crossbeam-0.8, rust-env-logger-0.6 to rust-env-logger-0.8,
rust-nix-0.14 to rust-nix-0.19, rust-time-0.1 to rust-time-0.2, and
rust-vte-0.3 to rust-vte-0.9.
2021-03-23 21:08:15 +01:00
7932034d07
gnu: rust-vte@0.9: New package version.
...
* gnu/packages/crates-io.scm (rust-vte-0.9): New public variable.
2021-03-23 20:34:32 +01:00
56b0568450
gnu: rust-tuikit@0.4: Update to 0.4.5.
...
* gnu/packages/crates-io.scm (rust-tuikit-0.4): Update to 0.4.5.
2021-03-23 20:34:32 +01:00
7dbb5ca361
gnu: rust-time@0.2: Update to 0.2.23.
...
* gnu/packages/crates-io.scm (rust-time-0.2): Update to 0.2.23.
2021-03-23 20:34:31 +01:00
1ef63d74d9
gnu: rust-beef: Update to 0.5.0.
...
* gnu/packages/crates-io.scm (rust-beef-0.4): Rename to...
(rust-beef-0.5): ...this. Update to 0.5.0.
2021-03-23 20:34:31 +01:00
3c9a353849
services: cuirass: Set default port values.
...
* gnu/services/cuirass.scm (<cuirass-remote-server-configuration>,
<cuirass-configuration>): Set default port values.
2021-03-23 20:30:49 +01:00
feb68a26cc
gnu: icecat: Update to 78.9.0-guix0-preview1 [security fixes].
...
Includes fixes for CVE-2021-23981, CVE-2021-23982, CVE-2021-23984,
and CVE-2021-23987.
* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update upstream source hash.
2021-03-23 14:24:54 -04:00
8fae75a358
gnu: Add libheif.
...
* gnu/packages/image.scm (libheif): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-03-23 13:26:41 -04:00
e540663203
gnu: Borg: Adjust snippet for 1.1.16.
...
This is a followup to commit 8cb7854d27
2021-03-23 13:15:54 -04:00
2ee361c764
gnu: giac: Update to 1.7.0-1.
...
* gnu/packages/algebra.scm (giac): Update to 1.7.0-1.
2021-03-23 18:12:17 +01:00
eda735fb61
services: cuirass: Adapt to Cuirass 1.0.
...
* gnu/services/cuirass.scm (cuirass-shepherd-service,
cuirass-remote-worker-shepherd-service): Adapt to Cuirass 1.0.
2021-03-23 16:47:48 +01:00
eee69da3a5
tests: Remove Cuirass tests.
...
Those tests don't make sense anymore as the Cuirass 1.0 version has removed
the possibility to execute a custom registration procedure.
* gnu/tests/cuirass.scm: Remove it.
* gnu/local.mk (GNU_SYSTEM_MODULES): Ditto.
2021-03-23 16:47:47 +01:00
5802858be3
gnu: fcitx5-qt: Update to 5.0.5.
...
* gnu/packages/fcitx5.scm (fcitx5-qt): Update to 5.0.5.
2021-03-23 14:20:06 +01:00
46cac065be
gnu: efibootmgr: Update to 17.
...
* gnu/packages/linux.scm (efibootmgr): Update to 17.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
Add a patch to build against efivar@37.
* gnu/packages/patches/efibootmgr-remove-extra-decl.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-03-23 14:20:06 +01:00
6139c879a5
gnu: perl-moosex-getopt: Update to 0.75.
...
* gnu/packages/perl.scm (perl-moosex-getopt): Update to 0.75.
2021-03-23 14:20:05 +01:00
94963642a8
gnu: yggdrasil: Update to 0.3.16.
...
* gnu/packages/networking.scm (yggdrasil): Update to 0.3.16.
2021-03-23 14:20:05 +01:00
dbcd90cba7
gnu: rpm: Update to 4.16.1.3.
...
* gnu/packages/package-management.scm (rpm): Update to 4.16.1.3.
2021-03-23 14:20:05 +01:00
f119612d64
gnu: cgal: Update to 5.2.1.
...
* gnu/packages/graphics.scm (cgal): Update to 5.2.1.
[source]: Remove patch.
* gnu/packages/patches/cgal-security-pr-5371.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-03-23 14:20:05 +01:00
1585452e1f
gnu: wildmidi: Update to 0.4.4.
...
* gnu/packages/audio.scm (wildmidi): Update to 0.4.4.
2021-03-23 14:20:04 +01:00
6cea2873a1
gnu: mpg123: Update to 1.26.5.
...
* gnu/packages/mp3.scm (mpg123): Update to 1.26.5.
2021-03-23 14:20:04 +01:00
8cb7854d27
gnu: borg: Update to 1.1.16.
...
* gnu/packages/backup.scm (borg): Update to 1.1.16.
2021-03-23 14:20:04 +01:00
3d5cca1a32
gnu: libime: Update to 1.0.5.
...
* gnu/packages/fcitx5.scm (libime): Update to 1.0.5.
2021-03-23 14:20:04 +01:00
688c066e35
gnu: xcb-imdkit: Update to 1.0.3.
...
* gnu/packages/fcitx5.scm (xcb-imdkit): Update to 1.0.3.
2021-03-23 14:20:03 +01:00
9d4bc79b2a
gnu: minetest-mineclone: Update to 0.71.0.
...
* gnu/packages/games.scm (minetest-mineclone): Update to 0.71.0.
2021-03-23 13:54:21 +01:00
0efd68681d
gnu: cuirass: Update to 1.0.0-2.6f4a203.
...
* gnu/packages/ci.scm (cuirass): Update to 1.0.0-2.6f4a203.
2021-03-23 12:01:23 +01:00
862af8c2ed
ci: Change manifest argument type.
...
* gnu/ci.scm (arguments->manifests): Change manifest argument type.
2021-03-23 11:48:35 +01:00
d1e1682749
gnu: cuirass: Update to 1.0.0-1.0497e0d.
...
* gnu/packages/ci.scm (cuirass): Update to 1.0.0-1.0497e0d.
2021-03-23 11:48:35 +01:00
7fc1fac64a
gnu: minetest: Enable tests.
...
* gnu/packages/games.scm (minetest)[arguments]: Remove #:tests?.
Add #:phases.
Co-authored-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-03-23 11:30:54 +01:00
b6670d5b3a
gnu: minetest: Update to 5.4.0.
...
* gnu/packages/games (minetest, minetest-data): Update to 5.4.0.
Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-03-23 11:30:20 +01:00
e44b968bf6
gnu: rust-env-logger-0.8: Update to 0.8.3.
...
* gnu/packages/crates-io.scm (rust-env-logger-0.8): Update to 0.8.3.
2021-03-23 12:24:39 +02:00
45dfcdba86
gnu: diffoscope: Update to 170.
...
* gnu/packages/diffoscope.scm (diffoscope): Update to 170.
[arguments]: Remove skip-dex-test-with-missing-procyon phase.
2021-03-22 19:50:28 -07:00
ca5420d3b2
gnu: Add disarchive.
...
* gnu/packages/backup.scm (disarchive): New variable.
2021-03-22 22:18:29 -04:00
897177c98e
gnu: celluloid: Update to 0.21.
...
* gnu/packages/video.scm (celluloid): Update to 0.21.
2021-03-23 00:09:51 +01:00
4cc2a28157
gnu: wesnoth: Update to 1.14.16.
...
* gnu/packages/games.scm (wesnoth): Update to 1.14.16.
2021-03-22 23:52:56 +01:00
98c3eed1d5
gnu: xchm: Update to 1.32.
...
* gnu/packages/ebook.scm (xchm): Update to 1.32.
2021-03-22 23:52:56 +01:00
4d2553e7b5
gnu: man-pages: Update to 5.11.
...
* gnu/packages/man.scm (man-pages): Update to 5.11.
2021-03-22 23:52:55 +01:00
b9c150fc9a
gnu: Add emacs-password-store-otp.
...
* gnu/packages/emacs-xyz.scm (emacs-password-store-otp): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-22 22:45:44 +01:00
75a95ed95f
gnu: python-duniterpy: Update to 0.62.0.
...
* gnu/packages/finance.scm (python-duniterpy): Update to 0.62.0.
2021-03-22 22:36:43 +01:00
3de6fb621a
gnu: emacs-auctex: Update to 13.0.5.
...
* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 13.0.5.
2021-03-22 22:34:00 +01:00
6c1217c22c
gnu: Add emacs-ivy-hydra.
...
* gnu/packages/emacs-xyz.scm (emacs-ivy-hydra): New variable.
Signed-off-by: Jelle Licht <jlicht@fsfe.org>
2021-03-22 22:02:00 +01:00
b246420e40
gnu: Add emacs-ivy-avy.
...
* gnu/packages/emacs-xyz.scm (emacs-ivy-avy): New variable.
Signed-off-by: Jelle Licht <jlicht@fsfe.org>
2021-03-22 22:01:39 +01:00
ce995d5206
gnu: mate-panel: Add missing inputs for Wayland support.
...
* gnu/packages/mate.scm (mate-panel)[inputs]: Add gtk-layer-shell and
wayland.
2021-03-22 15:45:33 +01:00
e2757be5d5
gnu: gtk-layer-shell: Update to 0.6.0.
...
* gnu/packages/gtk.scm (gtk-layer-shell): Update to 0.6.0.
[source]: Switch to git-fetch because release tarballs are no longer provided
by upstream.
[arguments]<#:configure-flags>: Add "-Dtests=true" otherwise tests are not
built for 'check phase to work.
2021-03-22 15:43:15 +01:00
ee4fc3b662
gnu: Add r-signac.
...
* gnu/packages/bioinformatics.scm (r-signac): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2021-03-22 14:27:17 +01:00
dd4670d40d
gnu: Add r-lsa.
...
* gnu/packages/cran.scm (r-lsa): New variable.
2021-03-22 14:27:17 +01:00
0ff888108a
gnu: Add r-chromstar.
...
* gnu/packages/bioconductor.scm (r-chromstar): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2021-03-22 14:27:13 +01:00
1f958631ef
gnu: Add r-chromstardata.
...
* gnu/packages/bioconductor.scm (r-chromstardata): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2021-03-22 14:26:58 +01:00
a2f3a456be
gnu: nyxt: Update to 2-pre-release-6.
...
* gnu/packages/web-browsers.scm (nyxt): Update to 2-pre-release-6.
2021-03-22 13:18:35 +01:00
8e92c58bc3
gnu: sbcl: Update to 2.1.2.
...
* gnu/packages/lisp.scm (sbcl): Update to 2.1.2.
2021-03-22 13:18:35 +01:00
ff1c7e4025
gnu: sequoia4pEp: Adjust inputs.
...
* gnu/packages/sequoia.scm (sequoia4pEp)[arguments]: Override inherited
cargo-inputs, cargo-development-inputs. Replace inherited 'unpin-deps
phase.
2021-03-22 11:20:17 +02:00
dd70fa8108
gnu: rust-syn-1: Update to 1.0.64.
...
* gnu/packages/crates-io.scm (rust-syn-1): Update to 1.0.64.
2021-03-22 11:12:18 +02:00
bf3033ef9c
gnu: Add rust-rusqlite-0.19.
...
* gnu/packages/crates-io.scm (rust-rusqlite-0.19): New variable.
2021-03-22 11:02:11 +02:00
87bd8ae928
gnu: rust-capnp-rpc-0.13: Fix build.
...
* gnu/packages/crates-io.scm (rust-capnp-rpc-0.13)[arguments]: Don't
skip build.
[cargo-inputs]: Replace rust-futures-0.1 with 0.3.
2021-03-22 10:44:23 +02:00
7bc7398c28
gnu: rust-capnp-futures-0.13: Fix build.
...
* gnu/packages/crates-io.scm (rust-capnp-futures-0.13)[arguments]: Don't
skip build.
[cargo-inputs]: Replace rust-futures-0.1 with 0.3.
[cargo-development-inputs]: Replace rust-quickcheck-0.2 with 0.9.
2021-03-22 10:43:09 +02:00
e055e2d5f7
gnu: Add rust-capnp-rpc-0.10: New variable.
...
* gnu/packages/crates-io.scm (rust-capnp-rpc-0.10): New variable.
2021-03-22 10:39:26 +02:00
a6d8701574
gnu: Add rust-capnp-futures-0.10.
...
* gnu/packages/crates-io.scm (rust-capnp-futures-0.10): New variable.
2021-03-22 10:38:35 +02:00
af402f42b4
gnu: Add rust-capnpc-0.10.
...
* gnu/packages/crates-io.scm (rust-capnpc-0.10): New variable.
2021-03-22 10:37:42 +02:00
eed0e6173a
gnu: rust-capnp-0.13: Fix build.
...
* gnu/packages/crates-io.scm (rust-capnp-0.13)[arguments]: Don't skip
build.
[cargo-inputs]: Remove rust-futures-0.1. Replace rust-quickcheck-0.2
with 0.9.
[cargo-development-inputs]: Replace rust-quickcheck-0.2 with 0.9.
2021-03-22 10:34:37 +02:00
d177db7997
gnu: Add rust-capnp-0.10.
...
* gnu/packages/crates-io.scm (rust-capnp-0.10): New variable.
2021-03-22 10:29:42 +02:00
2d24b80f3c
gnu: rust-log-0.4: Fix inputs.
...
* gnu/packages/crates-io.scm (rust-log-0.4)[arguments]: Don't skip
build. Skip tests.
[cargo-inputs]: Replace rust-cfg-if-0.1 with 1.
[cargo-development-inputs]: Add rust-serde-1, rust-serde-test-1,
rust-sval-1, rust-value-bag-1.
2021-03-22 10:28:50 +02:00
4d0fe40f65
gnu: sequoia4pEp: Move to sequoia.scm.
...
Don't have cross module package inheritance.
* gnu/packages/pep.scm (sequoia4pEp): Move to ...
* gnu/packages/sequoia.scm (sequoia4pEp): ... here. Hide package.
2021-03-22 09:54:19 +02:00
ccb7d1340d
gnu: python-pytest-django: Build with pytest-6.
...
* gnu/packages/django.scm (python-pytest-django)[propagated-inputs]:
Replace python-pytest with python-pytest-6.
2021-03-22 09:19:27 +02:00
17b408e6a2
gnu: oil: Update to 0.8.8.
...
* gnu/packages/shells.scm (oil): Update to 0.8.8.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-03-21 19:43:32 -04:00
d30f8f3a97
gnu: poke: Update to 1.1.
...
* gnu/packages/engineering.scm (poke): Update to 1.1.
2021-03-21 23:41:01 +01:00
5f9b28b231
gnu: balsa: Update to 2.6.2.
...
* gnu/packages/mail.scm (balsa): Update to 2.6.2.
[inputs]: Add libassuan. Upgrade gtksourceview.
2021-03-21 22:13:32 +01:00
a0b3d968be
gnu: msmtp: Update to 1.8.15.
...
* gnu/packages/mail.scm (msmtp): Update to 1.8.15.
2021-03-21 22:13:32 +01:00
759e9acd8f
gnu: webkitgtk: Update to 2.30.6.
...
* gnu/packages/webkit.scm (webkitgtk): Update to 2.30.6.
2021-03-21 22:13:32 +01:00
b3c29d90a6
gnu: openresolv: Update to 3.12.0.
...
* gnu/packages/dns.scm (openresolv): Update to 3.12.0.
2021-03-21 22:13:31 +01:00
35c55931bf
gnu: xfsprogs: Update to 5.11.0.
...
* gnu/packages/linux.scm (xfsprogs): Update to 5.11.0.
2021-03-21 22:13:31 +01:00
43ed895379
gnu: rng-tools: Update to 6.12.
...
* gnu/packages/linux.scm (rng-tools): Update to 6.12.
2021-03-21 22:13:31 +01:00
bba6d15210
gnu: haveged: Update to 1.9.14.
...
* gnu/packages/linux.scm (haveged): Update to 1.9.14.
2021-03-21 22:13:31 +01:00
cf5a4b2e45
gnu: mbpfan: Update to 2.2.1.
...
* gnu/packages/linux.scm (mbpfan): Update to 2.2.1.
2021-03-21 22:13:30 +01:00
8ce8ff7db9
gnu: perl-net-http: Update to 6.21.
...
* gnu/packages/web.scm (perl-net-http): Update to 6.21.
2021-03-21 22:13:30 +01:00
c721e00ef1
gnu: python-pygithub: Update to 1.54.1.
...
* gnu/packages/python-xyz.scm (python-pygithub): Update to 1.54.1.
[arguments]: Remove 'disable-failing-tests, 'prepare-for-tests phases.
Add custom 'check phase.
[propagated-inputs]: Add python-cryptography.
[native-inputs]: Add python-httpretty, python-pytest.
2021-03-21 22:24:27 +02:00
9a75728318
gnu: python-httpretty: Update to 1.0.5.
...
* gnu/packages/web.scm (python-httpretty): Update to 1.0.5.
[arguments]: Disable tests. Add custom 'check phase.
[propagated-inputs]: Remove field.
[native-inputs]: Remove python-httplib2, python-mock,
python-nose-randomly, python-urllib3. Add python-eventlet.
2021-03-21 22:18:51 +02:00
46479ec558
gnu: linux-libre 4.19: Update to 4.19.182.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.182.
(linux-libre-4.19-pristine-source): Update hash.
2021-03-21 13:26:08 -04:00
06017698c6
gnu: linux-libre 5.4: Update to 5.4.107.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.107.
(linux-libre-5.4-pristine-source): Update hash.
2021-03-21 13:26:08 -04:00
0a202d0b44
gnu: linux-libre 5.10: Update to 5.10.25.
...
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.25.
(linux-libre-5.10-pristine-source): Update hash.
2021-03-21 13:26:08 -04:00
7b01a59d85
gnu: linux-libre: Update to 5.11.8.
...
* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.8.
(linux-libre-5.11-pristine-source): Update hash.
2021-03-21 13:26:04 -04:00
5229d56db0
gnu: wcslib: Update to 7.5.
...
* gnu/packages/astronomy.scm (wcslib): Update to 7.5.
2021-03-21 15:36:07 +01:00
660208cfd5
gnu: gnumeric: Update to 1.12.49.
...
* gnu/packages/gnome.scm (gnumeric): Update to 1.12.49.
2021-03-21 15:36:07 +01:00
7244ec07a2
gnu: jasper: Update to 2.0.27.
...
* gnu/packages/image.scm (jasper): Update to 2.0.27.
2021-03-21 15:36:06 +01:00
b8b398a7d3
gnu: fluidsynth: Update to 2.1.8.
...
* gnu/packages/audio.scm (fluidsynth): Update to 2.1.8.
2021-03-21 15:36:06 +01:00
ebe967e1b7
gnu: vim: Update to 8.2.2632.
...
* gnu/packages/vim.scm (vim): Update to 8.2.2632.
[arguments]: Disable another test (Test_combining_double_width).
2021-03-21 15:36:06 +01:00
f03a2e99fa
gnu: inxi-minimal: Update to 3.3.03-1.
...
* gnu/packages/admin.scm (inxi-minimal): Update to 3.3.03-1.
2021-03-21 15:36:06 +01:00
2ac2a57f37
gnu: qtractor: Update to 0.9.21.
...
* gnu/packages/music.scm (qtractor): Update to 0.9.21.
2021-03-21 15:36:06 +01:00
e83faf04fa
gnu: padthv1: Update to 0.9.21.
...
* gnu/packages/music.scm (padthv1): Update to 0.9.21.
2021-03-21 15:36:05 +01:00
aa1f2945f0
gnu: samplv1: Update to 0.9.21.
...
* gnu/packages/music.scm (samplv1): Update to 0.9.21.
2021-03-21 15:36:05 +01:00
945d9cea18
gnu: drumkv1: Update to 0.9.21.
...
* gnu/packages/music.scm (drumkv1): Update to 0.9.21.
2021-03-21 15:36:05 +01:00
37b2e9c3b6
gnu: synthv1: Update to 0.9.21.
...
* gnu/packages/music.scm (synthv1): Update to 0.9.21.
2021-03-21 15:36:05 +01:00
d31db5cff3
gnu: youtube-dl: Update to 2021.03.14.
...
* gnu/packages/video.scm (youtube-dl): Update to 2021.03.14.
2021-03-21 15:36:04 +01:00
177dcce76e
gnu: emacs-package-lint: Install missing data.
...
The `package-lint-symbol-info' constant in this package depends on the
stdlib-changes file being installed.
* gnu/packages/emacs-xyz.scm (emacs-package-lint)[arguments]: Add the
#:include argument.
2021-03-21 15:04:55 +01:00
06bdb640ce
gnu: Add movim-desktop.
...
* gnu/packages/messaging.scm (movim-desktop): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-21 12:33:28 +01:00
4cd88522f2
gnu: Add guile-quickcheck.
...
* gnu/packages/guile-xyz.scm (guile-quickcheck): New variable.
2021-03-21 12:05:54 +01:00
aa24d2d44c
gnu: python-pikepdf: Update to 2.9.1.
...
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.9.1.
2021-03-21 10:12:52 +01:00
f156a07d43
gnu: emacs-ebuild-mode: Update to 1.52.
...
* gnu/packages/emacs-xyz.scm (emacs-ebuild-mode): Update to 1.52.
2021-03-21 10:11:22 +01:00
e559288c1b
gnu: fet: Update to 5.49.1.
...
* gnu/packages/education.scm (fet): Update to 5.49.1.
2021-03-21 10:10:42 +01:00
ff34334cfc
gnu: emilua: Update to 0.3.0.
...
* gnu/packages/lua.scm (emilua): Update to 0.3.0.
[arguments]: Add guix version suffix, enable http module. Disable
manpages.
[inputs]: Add fmt.
[search-paths]: New field.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-21 11:04:41 +02:00
ba0dc1dbc1
gnu: Add linux-libre-arm-generic at version 5.10.
...
* gnu/packages/linux.scm (linux-libre-arm-generic-5.10): New variable.
2021-03-20 17:46:33 -07:00
ece9fba60e
gnu: Add linux-libre-arm64-generic at version 5.10.
...
* gnu/packages/linux.scm (linux-libre-arm64-generic-5.10): New variable.
2021-03-20 17:44:10 -07:00
d4987a50ce
gnu: Add julia-http.
...
* gnu/packages/julia-xyz.scm (julia-http): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-20 22:29:15 +01:00
52d09b1f14
gnu: Add julia-bufferedstreams.
...
* gnu/packages/julia-xyz.scm (julia-bufferedstreams): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-20 22:29:15 +01:00
fc78157858
gnu: Add julia-inifile.
...
* gnu/packages/julia-xyz.scm (julia-inifile): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-20 22:29:15 +01:00
8f59a9fb6d
gnu: Add julia-uris.
...
* gnu/packages/julia-xyz.scm (julia-uris): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-20 22:29:15 +01:00
a72d3ca844
gnu: Add julia-mbedtls.
...
* gnu/packages/julia-xyz.scm (julia-mbedtls): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-20 22:29:15 +01:00
3291e4ba97
gnu: Add julia-mbedtls-jll.
...
* gnu/packages/julia-xyz.scm (julia-mbedtls-jll): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-20 22:29:14 +01:00
a06db9c1ee
gnu: Add julia-jllwrappers.
...
* gnu/packages/julia-xyz.scm (julia-jllwrappers): New variable.
* doc/guix.texi (julia-build-system): Document how to use jllwrappers to use
to guix binary packages.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2021-03-20 22:29:14 +01:00
03010d5d3e
gnu: Add julia-benchmarktools.
...
* gnu/packages/julia-xyz.scm (julia-benchmarktools): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-20 22:29:14 +01:00
81d45a66d5
gnu: julia-adapt: Set file-name according to standards.
...
* gnu/packages/julia-xyz.scm (julia-adapt)[source]: Change 'file-name'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-20 22:29:14 +01:00
cec4f5f556
gnu: guile-lib: Update to 0.2.7.
...
* gnu/packages/guile-xyz.scm (guile-lib): Remove trailing #t.
[source]: Remove snippet and modules field.
[phases]{patch-for-cross-compilation}: Remove phase.
[native-inputs]: Add pkg-config.
2021-03-20 15:55:18 -04:00
13953f0e7e
gnu: glib: Partially revert bb804a0d58.
...
It contained some changes used during tests that should not have been
commited.
* gnu/packages/glib (glib/fixed): Do not make public.
2021-03-20 18:25:44 +01:00
bb804a0d58
gnu: glib: Increase timeout for armhf builds.
...
* gnu/packages/glib.scm (glib)[arguments]: Increase timeout for armhf
builds.
2021-03-20 18:22:44 +01:00
b09967bc58
gnu: Add psi-plus.
...
* gnu/packages/messaging.scm (psi-plus): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-20 17:51:31 +01:00
54fd3167ff
gnu: Add qite.
...
* gnu/packages/qt.scm (qite): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-20 17:50:13 +01:00
7f7ad800b0
gnu: Add qhttp.
...
* gnu/packages/web.scm (qhttp): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-20 17:48:56 +01:00
f5e69549ba
gnu: Add usrsctp.
...
* gnu/packages/networking.scm (usrsctp): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-20 17:47:03 +01:00
5adfaa6853
gnu: Add kappanhang.
...
* gnu/packages/radio.scm (kappanhang): New variable.
2021-03-20 11:19:30 +01:00
caf3209a8f
gnu: Add go-go-uber-org-zap.
...
* gnu/packages/golang.scm (go-go-uber-org-zap): New variable.
2021-03-20 11:19:29 +01:00
05d261b88e
gnu: Add go-honnef-co-go-tools.
...
* gnu/packages/golang.scm (go-honnef-co-go-tools): New variable.
2021-03-20 11:19:29 +01:00
81aa7cea64
gnu: Add go-github-com-kisielk-gotool.
...
* gnu/packages/golang.scm (go-github-com-kisielk-gotool): New variable.
2021-03-20 11:19:29 +01:00
81976123b2
gnu: Add go-golang-org-x-lint.
...
* gnu/packages/golang.scm (go-golang-org-x-lint): New variable.
2021-03-20 11:19:29 +01:00
08c3614125
gnu: Add go-go-uber-org-multierr.
...
* gnu/packages/golang.scm (go-go-uber-org-multierr): New variable.
2021-03-20 11:19:29 +01:00
32c979675e
gnu: Add go-go-uber-org-atomic.
...
* gnu/packages/golang.scm (go-go-uber-org-atomic): New variable.
2021-03-20 11:19:29 +01:00
3554527c53
gnu: Add go-github-com-pborman-getopt.
...
* gnu/packages/golang.scm (go-github-com-pborman-getopt): New variable.
2021-03-20 11:19:29 +01:00
efbc8db0f0
gnu: Add go-github-com-mesilliac-pulse-simple.
...
* gnu/packages/golang.scm (go-github-com-mesilliac-pulse-simple): New
variable.
2021-03-20 11:19:29 +01:00
aa45673746
gnu: Add go-github-com-akosmarton-papipes.
...
* gnu/packages/golang.scm (go-github-com-akosmarton-papipes): New variable.
2021-03-20 11:19:29 +01:00
6457985e39
gnu: abseil-cpp: Patch sterror_test.
...
* gnu/packages/patches/abseil-cpp-fix-gtest.patch: Renamed file.
* gnu/packages/patches/abseil-cpp-fix-strerror_test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Rename / add files.
* gnu/packages/cpp.scm (abseil-cpp)[source]: Use files.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-19 22:32:40 +01:00
c4d616f7c6
gnu: abseil-cpp: Update to 20200923.3.
...
* gnu/packages/cpp.scm (abseil-cpp): Update to 20200923.3.
[arguments]: Enable external googletest.
* gnu/packages/patches/abseil-cpp-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-19 22:17:03 +01:00
f08a60bbec
gnu: Add fzf.
...
* gnu/packages/terminals.scm (fzf): New variable, which inherits
from the existing go-github-com-junegunn-fzf package, but also
install other binary, and completion for direct usage.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-19 22:13:51 +01:00
369d0e7f5c
gnu: Add git2cl.
...
* gnu/packages/version-control.scm (git2cl): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-19 21:51:06 +01:00
1ab03fb745
gnu: srt2vtt: Update to 0.2.
...
* gnu/packages/video.scm (srt2vtt): Update to 0.2. Wrap executable.
2021-03-19 11:57:46 -04:00
1521775bcb
gnu: Add psi.
...
* gnu/packages/messaging.scm (psi): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-19 15:40:32 +01:00
9991b5e3e5
gnu: Add dragon-drop.
...
* gnu/packages/gtk.scm (dragon-drop): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-19 13:57:00 +01:00
b6f0c99201
gnu: vis: Update to 0.7.
...
* gnu/packages/text-editors.scm (vis): Update to 0.7.
[home-page, source]: Use sourcehut upstream URIs instead of github.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-19 13:50:17 +01:00
7b79ca0a05
gnu: swi-prolog: Update to 8.3.20.
...
* gnu/packages/prolog.scm (swi-prolog): Update to 8.3.20.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-19 13:24:17 +01:00
ee21803288
gnu: openmpi: Update to 4.1.0.
...
* gnu/packages/mpi.scm (openmpi): Update to 4.1.0.
2021-03-19 13:23:27 +01:00
14aa86e50c
gnu: openmpi: Add 'release-monitoring-url' property.
...
* gnu/packages/mpi.scm (openmpi)[properties]: New field.
2021-03-19 13:23:26 +01:00
60d629d777
gnu: busybox: Update to 1.33.0.
...
* gnu/packages/busybox.scm (busybox): Update to 1.33.0.
2021-03-19 12:00:13 +01:00
572528e7dd
gnu: busybox: Fix CVE-2021-28831.
...
* gnu/packages/patches/busybox-CVE-2021-28831.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/busybox.scm (busybox): Apply it.
2021-03-19 11:56:38 +01:00
c1245f01ef
gnu: ruby-kramdown: Update to 2.3.1 [fixes CVE-2021-28834].
...
* gnu/packages/ruby.scm (ruby-kramdown): Update to 2.3.1.
2021-03-19 11:44:41 +01:00
1155a88308
gnu: ungoogled-chromium: Update to 89.0.4389.90-1.
...
* gnu/packages/patches/ungoogled-chromium-system-opus.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 89.
(%chromium-version): Remove variable.
(%ungoogled-revision): Set to 89.0.4389.90-1.
(%ungoogled-origin): Conditionally set file name based on commit/tag.
(%guix-patches): Add the new file.
(libvpx/chromium): Update to 1.9.0-104-gb5d77a48d.
(ungoogled-chromium)[version]: Use %UNGOOGLED-REVISION.
[source]: Update hash.
[arguments]: Adjust #:configure-flags for build system changes. Don't build
with external WebRTC SSL library. Remove obsolete substitution.
[inputs]: Remove OPENSSL. Change from PIPEWIRE to PIPEWIRE-0.3.
2021-03-19 00:14:11 +01:00
bb8a0d8057
gnu: emacsy-minimal: Fix build.
...
* gnu/packages/guile-xyz.scm (emacsy-minimal)[native-inputs]:
Add autoconf, automake, gettext-minimal, libtool, pkg-config,
and texinfo.
2021-03-18 21:07:46 +01:00
efe7a17406
gnu: Add countdown.
...
* gnu/packages/time.scm (countdown): New variable.
Also adds copyright, adds necessary module dependencies, and sorts them alphabetically.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-18 19:41:32 +01:00
a398e06cad
gnu: emacs-flymake-shellcheck: Update to 0.1-1.ac534e9
...
* gnu/packages/emacs-xyz.scm (emacs-flymake-shellcheck): Update to 0.1-1.ac534e9
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-18 19:37:35 +01:00
bfaeee5675
gnu: emacs-leaf: Update to 4.4.4.
...
* gnu/packages/emacs-xyz.scm (emacs-leaf): Update to 4.4.4.
2021-03-18 17:35:22 +01:00
b6df89efb0
gnu: dhewm3: Update to 1.5.1.
...
* gnu/packages/game-development.scm (dhewm3): Update to 1.5.1.
2021-03-18 17:08:11 +01:00
c2265e0285
gnu: elixir: Update to 1.11.4.
...
* gnu/packages/elixir.scm (elixir): Update to 1.11.4.
2021-03-18 17:08:10 +01:00
d9bdd6fa92
gnu: goffice: Update to 0.10.49.
...
* gnu/packages/gnome.scm (goffice): Update to 0.10.49.
2021-03-18 17:08:10 +01:00
e999ea12ea
gnu: di: Update to 4.49.
...
* gnu/packages/admin.scm (di): Update to 4.49.
[source]: Update URL.
2021-03-18 17:08:10 +01:00
2baae75e82
gnu: isc-dhcp: Update bundled bind to 9.11.29.
...
* gnu/packages/admin.scm (isc-dhcp)[inputs]: Update bundled bind to
9.11.29.
2021-03-18 17:08:10 +01:00
000e27b3d7
gnu: bind: Update to 9.16.13.
...
* gnu/packages/dns.scm (isc-bind): Update to 9.16.13.
2021-03-18 17:08:10 +01:00
94f0312546
gnu: guix: Update to ec7fb66 [security].
...
This updates the 'guix' package so that it provides the fix
for <https://bugs.gnu.org/47229 >.
* gnu/packages/package-management.scm (guix): Update to ec7fb66
2021-03-18 12:32:03 +01:00
898489f48e
services: Enable "protected hardlinks" and "protected symlinks" by default.
...
References:
https://sysctl-explorer.net/fs/protected_hardlinks/
https://sysctl-explorer.net/fs/protected_symlinks/
* gnu/services/sysctl.scm (%default-sysctl-settings): New public variable.
(<sysctl-configuration>): Use %default-sysctl-settings as the default value.
* gnu/services/base.scm (%base-services): Add sysctl-service-type.
* doc/guix.texi (Miscellaneous Services): Document the new defaults.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-18 12:17:33 +01:00
45695cc8a7
Revert "gnu: python2-urllib3: Update to 1.26.4 [fixes CVE-2021-28363]."
...
In response to commit 1a265842e6https://bugs.gnu.org/47186 >.
This reverts commit db87d6ddaf
2021-03-18 11:26:11 +01:00
2e0ff59f0c
gnu: imagemagick/fixed: Redirect old sonames to new sonames.
...
* gnu/packages/imagemagick.scm (imagemagick/fixed)[arguments]: Add
'fix-compat-cheat-rename-so phase to redirect old soname paths (expected
without grafting) to new sonames introduced by ImageMagick 6.9.12-0 and
later. These sonames are probably not forward compatible but most probably
backwards compatible so it should suffice until we remove the graft.
2021-03-18 11:13:18 +01:00
334c6850c6
gnu: linux-libre 4.4: Update to 4.4.262.
...
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.262.
(linux-libre-4.4-pristine-source): Update hash.
2021-03-18 01:05:49 -04:00
c3504337cc
gnu: linux-libre 4.9: Update to 4.9.262.
...
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.262.
(linux-libre-4.9-pristine-source): Update hash.
2021-03-18 01:05:48 -04:00
d72347deec
gnu: linux-libre 4.14: Update to 4.14.226.
...
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.226.
(linux-libre-4.14-pristine-source): Update hash.
2021-03-18 01:05:48 -04:00
1ff0377a52
gnu: linux-libre 4.19: Update to 4.19.181.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.181.
(linux-libre-4.19-pristine-source): Update hash.
2021-03-18 01:05:48 -04:00
1de35e8036
gnu: linux-libre 5.4: Update to 5.4.106.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.106.
(linux-libre-5.4-pristine-source): Update hash.
2021-03-18 01:05:48 -04:00
e0dcafc1c2
gnu: linux-libre 5.10: Update to 5.10.24.
...
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.24.
(linux-libre-5.10-pristine-source): Update hash.
2021-03-18 01:05:48 -04:00
aacfbb8c24
gnu: linux-libre: Update to 5.11.7.
...
* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.7.
(linux-libre-5.11-pristine-source): Update hash.
2021-03-18 01:05:48 -04:00
966e61fb8f
gnu: Add libucl.
...
* gnu/packages/wm.scm (libucl): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-17 23:10:20 +01:00
ce10e2b3e9
gnu: Use autoconf instead of autoconf-wrapper when possible.
...
This should reduce confusion on when to use the "autoconf"
package and when to use "autoconf-wrapper" instead in
package definitions.
Fixes <https://bugs.gnu.org/46564 >.
* gnu/packages/autotools.scm (autoconf-wrapper):
advise to use the "autoconf" package instead where
possible.
* gnu/packages/game-development.scm (tsukundere)[native-inputs]:
use "autoconf" instead of "autoconf-wrapper".
* gnu/packages/gimp.scm
(glimpse)[native-inputs]: likewise.
(gimp-resynthesizer)[native-inputs]: add comment on why
"autoconf-wrapper" is used.
* gnu/packages/gnunet.scm (gnunet)[native-inputs]:
use "autoconf" instead of "autoconf-wrapper".
* gnu/packages/gnupg.scm (signing-party)[native-inputs]:
add comment on why "autoconf-wrapper" is used.
* gnu/packages/guile-xyz.scm
(guile-bash,guile-filesystem,guile-ics,guile-udev)[native-inputs]:
use "autoconf" instead of "autoconf-wrapper".
* gnu/packages/libevent.scm (libuv)[native-inputs]: indicates
"autoconf-wrapper" needs to be replaced with "autoconf"
on core-updates.
* gnu/packages/logging.scm (glog)[native-inputs]: use "autoconf"
instead of "autoconf-wrapper".
* gnu/packages/mail.scm (libetpan)[native-inputs]: likewise.
* gnu/packages/mate.scm
(mate-icon-theme-faenza)[native-inputs]: add comment on why
"autoconf-wrapper" is used.
(mate-screensaver)[native-inputs]: use "autoconf" instead of
"autoconf-wrapper".
* gnu/packages/package-management.scm (guix)[native-inputs]: likewise.
* gnu/packages/sawfish.scm (librep)[native-inputs]: likewise.
* gnu/packages/video.scm (motion)[native-inputs]: likewise.
* gnu/packages/zile.scm (zile)[native-inputs]: likewise.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-17 23:10:19 +01:00
24f1ce9e71
gnu: scdoc: Cross-compile.
...
* gnu/packages/man.scm (scdoc)[arguments]: Use CC-FOR-TARGET.
2021-03-17 21:22:21 +01:00
841e5fb4dd
gnu: scdoc: Don't use unstable tarball.
...
The autogenerated tarball was modified upstream.
* gnu/packages/man.scm (scdoc)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2021-03-17 21:22:20 +01:00
d7b4ccefa9
gnu: libtirpc/hurd: Fix package source.
...
Amend the changes in 1a265842e6
2021-03-17 20:15:15 +00:00
f4f677f223
gnu: lua.scm: Sort package module imports alphabetically.
...
* gnu/packages/lua.scm: Sort package module imports alphabetically.
2021-03-17 21:33:01 +02:00
2691f57678
gnu: python-pygments: Update to 2.7.4 [fixes CVE-2021-27291].
...
* gnu/packages/python-xyz.scm (python-pygments/fixed): New variable.
(python-pygments)[replacement]: Graft.
2021-03-17 18:36:47 +01:00
cb424bad32
gnu: Add emacs-kotlin-mode.
...
* gnu/packages/emacs-xyz.scm (emacs-kotlin-mode): New variable.
2021-03-17 18:48:06 +03:00
d79d63e782
gnu: emacs-marginalia: Update to 0.4.
...
* gnu/packages/emacs-xyz.scm (emacs-marginalia): Update to 0.4.
2021-03-17 14:32:45 +01:00
284864df91
gnu: komikku: Update to 0.27.0.
...
* gnu/packages/gnome.scm (komikku): Update to 0.27.0.
[inputs]: Add python-brotli and webkitgtk.
2021-03-17 14:21:30 +01:00
fef91c0cc8
gnu: Move lolcode to esolangs.
...
* gnu/packages/lolcode.scm (lci): Move from here...
* gnu/packages/esolangs.scm (lolcode-lci): ... to here.
* gnu/packages/lolcode.scm: Delete file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2021-03-17 14:21:29 +01:00
d45d779e2a
gnu: tig: Update to 2.5.3.
...
* gnu/packages/version-control.scm (tig): Update to 2.5.3.
Co-authored-by: jgart <jgart@dismail.de>
Co-authored-by: donotshake <donotshake:matrix.org>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-17 12:03:25 +01:00
fe96f64110
gnu: hwloc: Add 'release-monitoring-url' property.
...
* gnu/packages/mpi.scm (hwloc-1)[properties]: New field.
2021-03-17 12:03:25 +01:00
f194fbf50e
gnu: gnome-autoar: Update to 0.3.1 [fixes CVE-2021-28650].
...
* gnu/packages/gnome.scm (gnome-autoar): Update to 0.3.1.
2021-03-17 11:39:01 +01:00
b26f958620
gnu: pzstd: Update to 1.4.9 [fixes CVE-2021-24032].
...
* gnu/packages/compression.scm (pzstd): Use 'package/inherit' over zstd so any
graft applied to zstd cascades onto pzstd which is built from the same
source.
2021-03-17 10:58:29 +01:00
1a265842e6
gnu: Use PACKAGE/INHERIT in more places.
...
* gnu/packages/algebra.scm (fftwf, fftw-openmpi),
gnu/packages/audio.scm (ztoolkit-rsvg),
gnu/packages/bioinformatics.scm (python2-dendropy),
gnu/packages/boost.scm (boost-with-python2),
gnu/packages/check.scm (python2-mock, python2-pytest-mock),
gnu/packages/cups.scm (hplip-minimal),
gnu/packages/freedesktop.scm (libinput-minimal),
gnu/packages/gettext.scm (gnu-gettext),
gnu/packages/glib.scm (python2-pygobject),
gnu/packages/gnome.scm (gdl-minimal, libsoup-minimal, python2-pyatspi),
gnu/packages/groff.scm (groff-minimal),
gnu/packages/jami.scm (ffmpeg-jami),
gnu/packages/libcanberra.scm (libcanberra/gtk+-2),
gnu/packages/lirc.scm (python2-lirc),
gnu/packages/llvm.scm (clang-runtime-3.5),
gnu/packages/mpi.scm (java-openmpi, openmpi-thread-multiple),
gnu/packages/node.scm (libnode),
gnu/packages/onc-rpc.scm (libtirpc/hurd),
gnu/packages/python-compression.scm (bitshuffle-for-snappy),
gnu/packages/python-crypto.scm (python2-pycrypto, python2-cryptography)
(python2-cryptography, python2-m2crypto),
gnu/packages/python-web.scm (python2-html2text, python2-tornado)
(python2-terminado, python2-ndg-httpsclient, python2-websocket-client)
(python2-rauth, python2-url, python2-s3transfer),
gnu/packages/python-xyz.scm (python2-psutil, python2-serpent)
(python2-humanfriendly, python2-empy, python2-parse-type, python2-polib)
(python2-jsonschema, python2-pystache, python2-cython, python2-numpydoc)
(python2-ipyparallel, python2-traitlets, python2-dbus)
(python2-beautifulsoup4, python2-pep517, python2-flake8, python2-llfuse)
(python2-tlsh, python-file, python2-notebook, python-jupyter-console-minimal)
(python2-contextlib2, python2-promise, python2-anyjson, python2-amqp)
(python2-kombu, python2-billiard, python2-celery, python2-whoosh)
(python2-jellyfish, python-rope, ptpython-2, python2-binaryornot)
(python2-setproctitle, python2-argcomplete, python2-xopen, python2-isort)
(python2-radon, python2-rfc6555, python2-activepapers, python2-send2trash)
(python2-cloudpickle, python2-reparser),
gnu/packages/python.scm (python2-called-python),
gnu/packages/qt.scm (python2-sip, python-pyqt-without-qtwebkit, python2-pyqt)
(python-qscintilla, python-pyqt+qscintilla),
gnu/packages/scanner.scm (sane-backends),
gnu/packages/sdl.scm (guile3.0-sdl2),
gnu/packages/selinux.scm (checkpolicy, libselinux, libsemanage, secilc)
(python-sepolgen, policycoreutils),
gnu/packages/serialization.scm (lua5.1-libmpack, lua5.2-libmpack),
gnu/packages/simulation.scm (fenics),
gnu/packages/statistics.scm (python2-statsmodels),
gnu/packages/texinfo.scm (info-reader),
gnu/packages/wxwidgets.scm (wxwidgets-gtk2, wxwidgets-gtk2-3.1),
gnu/packages/xml.scm (xmlsec-nss),
gnu/packages/xorg.scm (uim-gtk, uim-qt),
guix/build-system/python.scm (package-with-explicit-python)
(strip-python2-variant): Use PACKAGE/INHERIT.
2021-03-17 03:58:10 -04:00
d9f501b619
gnu: gvfs: Add 'lint-hidden-cve' property.
...
* gnu/packages/gnome.scm (gvfs)[properties]: New field, marking
CVE-2019-12447, CVE-2019-12448, and CVE-2019-12449 as fixed.
2021-03-16 22:38:18 -04:00
c3fe23d0de
gnu: gnome-shell: Add 'lint-hidden-cve' property.
...
* gnu/packages/gnome.scm (gnome-shell)[properties]: New field, marking
CVE-2019-3820 as fixed.
2021-03-16 22:38:12 -04:00
15423d38c5
gnu: qemu: Enable reproducible builds.
...
Fixes <https://issues.guix.gnu.org/47176 >. The solution was suggested by
bonzini on OFTC's #qemu channel.
* gnu/packages/virtualization.scm (qemu)[snippet]: Delete bundled meson copy.
[native-inputs]: Add meson-next.
2021-03-16 16:21:28 -04:00
f4259f93ea
gnu: Add meson-next.
...
* gnu/packages/build-tools.scm (meson-next): New variable.
2021-03-16 16:21:27 -04:00
109f58444b
gnu: mpg321: Fix CVE-2019-14247.
...
* gnu/packages/patches/mpg321-CVE-2019-14247.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/mp3.scm (mpg321)[source]: Apply it.
Signed-off-by: Léo Le Bouter <lle-bout@zaclys.net>
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-03-16 19:12:36 +01:00
82a9538ea0
gnu: varnish-modules: Update to 0.17.1 [fixes CVE-2021-28543].
...
* gnu/packages/web.scm (varnish-modules): Update to 0.17.1.
2021-03-16 18:41:41 +01:00
09b5cdf80d
gnu: tor: Update to 0.4.5.7 [security fixes].
...
* gnu/packages/tor.scm (tor): Update to 0.4.5.7.
2021-03-16 15:26:33 +02:00
4f02c4c4a9
gnu: snakemake: Add missing inputs.
...
* gnu/packages/python-xyz.scm (snakemake)[propagated-inputs]: Add
python-nbformat, python-pulp, and python-toposort.
2021-03-16 14:17:48 +01:00
08447ab7cd
gnu: Add python-toposort.
...
* gnu/packages/python-xyz.scm (python-toposort): New variable.
2021-03-16 14:17:48 +01:00
fa0a18522d
gnu: Add python-pulp.
...
* gnu/packages/python-xyz.scm (python-pulp): New variable.
2021-03-16 14:17:47 +01:00
c9006a0ee1
gnu: Add python-amply.
...
* gnu/packages/python-xyz.scm (python-amply): New variable.
2021-03-16 14:17:47 +01:00
55ef497479
gnu: emacs-easy-kill: Update to 0.9.4.
...
* gnu/packages/emacs-xyz.scm (emacs-easy-kill): Update to 0.9.4.
2021-03-16 14:11:14 +01:00
2724f1b231
gnu: emacs-leaf: Update to 4.4.0.
...
* gnu/packages/emacs-xyz.scm (emacs-leaf): Update to 4.4.0.
2021-03-16 14:10:17 +01:00
c954f795f9
gnu: python-pikepdf: Update to 2.9.0.
...
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.9.0.
2021-03-16 14:09:06 +01:00
335af327cd
gnu: asymptote: Update to 2.70.
...
* gnu/packages/plotutils.scm (asymptote): Update to 2.70.
2021-03-16 14:06:40 +01:00
451f23df5e
gnu: b4: Fix setup.py version incompatibility.
...
* gnu/packages/version-control.scm (b4)[source]: Add snippet to not
require too specific of a version.
Reported-by: Kyle Meyer <kyle@kyleam.com>
2021-03-16 14:28:25 +02:00
9bab0950f7
gnu: libmemcached: Disable test suite.
...
* gnu/packages/databases.scm (libmemcached): Disable test suite. Removing
trailing #t.
[phases]{fix-configure}: Remove useless group in pattern.
{disable-failing-tests}: Remove phase.
{build-and-install-html-doc}: Order after the build phase.
[home-page]: Please 'guix lint'.
Reported-by: Simon Tournier <zimon.toutoune@gmail.com>
2021-03-16 07:46:20 -04:00
fcf8c6c565
gnu: hisat2: Update to 2.2.1.
...
* gnu/packages/bioinformatics.scm (hisat2): Update to 2.2.1.
[source]: Fetch from git repository on Github.
[arguments]: Add phase to build manual; remove trailing #t from other phases.
[native-inputs]: Remove unzip.
[home-page]: Update.
[inputs]: Add python-wrapper.
2021-03-16 11:12:01 +01:00
097cf21d1d
gnu: Remove MongoDB.
...
mongodb 3.4.10 has unpatched CVEs and mongodb 3.4.24 has some files in the
release tarball under the SSPL, therefore we cannot provide mongodb while
upholding to good security standards.
It turns out feff80cec3
2021-03-16 11:05:24 +01:00
0ee5d4f7a8
gnu: git: Fix git-manpages native input's hash.
...
This is a follow-up to commit ab9629b7c9
2021-03-16 10:58:36 +01:00
ab9629b7c9
gnu: git: Update to 2.31.0.
...
* gnu/packages/version-control.scm (git): Update to 2.31.0.
2021-03-16 10:52:11 +01:00
db87d6ddaf
gnu: python2-urllib3: Update to 1.26.4 [fixes CVE-2021-28363].
...
* gnu/packages/python-web.scm (python2-urllib3)[base]: Base off of
python-urllib3/fixed.
2021-03-16 09:25:02 +01:00
a01bfa7dee
gnu: python-urllib3: Update to 1.26.4 [fixes CVE-2021-28363].
...
* gnu/packages/python-web.scm (python-urllib3/fixed): New variable.
(python-urllib3)[replacement]: Graft.
2021-03-16 08:59:38 +01:00
e5fcfb82e0
gnu: tmsu: Improve installation.
...
* gnu/packages/file-systems.scm (tmsu)[arguments]: Don't install go
source files. Install binary as tmsu instead of TMSU.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-16 09:37:16 +02:00
3679286bb4
gnu: glances: Update to 3.1.6.
...
* gnu/packages/python-xyz.scm (glances): Update to 3.1.6.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-16 09:34:41 +02:00
8ec0ca8faf
Revert some commits that caused `guix pull` to fail.
...
This reverts commits 821e6439218f9fd9b70c
2021-03-15 19:52:34 -04:00
8f9fd9b70c
gnu: r-biocparallel: Build reproducibly.
...
* gnu/packages/bioconductor.scm (r-biocparallel)[arguments]: Add phase
"make-reproducible".
2021-03-15 23:31:58 +01:00
d99a18252c
gnu: r-delayedarray: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Move from here...
* gnu/packages/bioconductor.scm (r-delayedarray): ...to here.
2021-03-15 23:30:26 +01:00
adf45daae9
gnu: r-rsamtools: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-rsamtools): Move from here...
* gnu/packages/bioconductor.scm (r-rsamtools): ...to here.
2021-03-15 23:30:26 +01:00
b1a19ab6e2
gnu: r-biostrings: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-biostrings): Move from here...
* gnu/packages/bioconductor.scm (r-biostrings): ...to here.
2021-03-15 23:30:26 +01:00
eab9807fb3
gnu: r-biocparallel: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Move from here...
* gnu/packages/bioconductor.scm (r-biocparallel): ...to here.
2021-03-15 23:30:26 +01:00
c11b541fba
gnu: r-biomart: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-biomart): Move from here...
* gnu/packages/bioconductor.scm (r-biomart): ...to here.
2021-03-15 23:30:26 +01:00
16c7e79ebb
gnu: r-annotationdbi: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Move from here...
* gnu/packages/bioconductor.scm (r-annotationdbi): ...to here.
2021-03-15 23:30:26 +01:00
457de7f401
gnu: r-biobase: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-biobase): Move from here...
* gnu/packages/bioconductor.scm (r-biobase): ...to here.
2021-03-15 23:30:26 +01:00
f3f09b99cd
gnu: r-genomicranges: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Move from here...
* gnu/packages/bioconductor.scm (r-genomicranges): ...to here.
2021-03-15 23:30:26 +01:00
e56b3db82e
gnu: r-xvector: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-xvector): Move from here...
* gnu/packages/bioconductor.scm (r-xvector): ...to here.
2021-03-15 23:30:26 +01:00
821e643921
gnu: r-limma: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-limma): Move from here...
* gnu/packages/bioconductor.scm (r-limma): ...to here.
2021-03-15 23:30:26 +01:00
74fdd0fea0
gnu: dbus-c++: Fix command name in description.
...
* gnu/packages/glib.scm (dbus-c++)[description]: Fix command prefix in
description, and mention the second command installed as well.
2021-03-15 18:03:17 -04:00
d15fdb66f3
gnu: qemu: Update to 5.2.0.
...
* gnu/packages/virtualization.scm (qemu): Update to 5.2.0.
[source]: Re-indent and break long lines, to appease 'guix lint'.
[arguments]{disable-unusable-tests}: Adjust for the new Meson build
system. Remove patching for a test workaround that has been resolved in
5.2.0.
{patch-test-shebangs, patch-/bin/sh-references}: Combine into...
{patch-embedded-shebangs}: ... this new phase. Patch the SHELL variable in
the Makefile.
{fix-optionrom-makefile}: New phase.
{install-user-static}: Adjust as the binaries are now symbolic links pointing to their
actual build path.
[native-inputs]: Add ninja.
* gnu/packages/patches/qemu-build-info-manual.patch: Update patch.
Co-authored-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-15 18:00:35 -04:00
77c2f4e206
services/qemu-binfmt: Use the F flag and the static output of QEMU.
...
Fixes <https://issues.guix.gnu.org/36117 >.
Before this change, the 'binfmt_misc' entries registered for QEMU would not be
usable in container contexts outside of guix-daemon (without manually bind
mounting file names).
For example:
$ docker run --rm arm32v7/debian true
standard_init_linux.go:207: exec user process caused "no such file or directory"
After this change, any container can make use of the QEMU binfmt_misc
registrations, as their corresponding QEMU static binaries are fully
pre-loaded by the kernel.
* gnu/services/virtualization.scm (<qemu-platform>): Define using
'define-record-type*'.
[flags]: New field, which defaults to "F" (fix binary).
(%i386, %i486, %alpha, %arm, %armeb, %sparc, %sparc32plus, %ppc, %ppc64)
(%ppc64le, %m68k, %mips, %mipsel, %mipsn32, %mipsn32el, %mips64, %mips64el)
(%riscv32, %riscv64, %sh4, %sh4eb, %s390x, %aarch64, %hppa): Adjust.
(qemu-binfmt-guix-chroot): Remove variable.
(qemu-binfmt-service-type): Remove the qemu-binfmt-guix-chroot extension.
* gnu/services/qemu-binfmt (qemu-platform->binfmt): Use the static output of
QEMU.
* doc/contributing.texi (Submitting Patches): Update doc.
* doc/guix.texi (Virtualization Services): Update doc.
2021-03-15 18:00:35 -04:00
d184fd4216
gnu: qemu: Add a static output.
...
The static output is equivalent to what other distributions commonly package
as 'qemu-user-static'.
* gnu/packages/virtualization.scm (qemu)[outputs]: Add a static output.
[phases]{configure}: Configure the main build as an out-of-source build. Move
all configure flags to ...
[configure-flags]: ... here. The options explicitly enabling optional
features are removed; the configure script does a good job at enabling all the
features available based on the inputs present and this allows reusing the
flags in variant packages such as qemu-minimal.
{configure-user-static, build-user-static, install-user-static}: New phases.
{patch-test-shebangs}: New phase, extracted from the configure phase.
[native-inputs]: Add glib-static, pcre:static and zlib:static.
(qemu-minimal)[arguments]: Reuse the configure-flags argument. Rewrite to use
match instead of cond.
2021-03-15 18:00:35 -04:00
ce29866c01
gnu: Add glib-static.
...
* gnu/packages/glib.scm (glib-static): New variable.
2021-03-15 18:00:35 -04:00
3fe46eef57
gnu: qemu: Fix indentation and remove trailing #t.
...
* gnu/packages/virtualization.scm (qemu): Fix indentation and remove
trailing #t, appeasing 'guix lint'.
2021-03-15 18:00:34 -04:00
29e992c030
gnu: r-seurat: Fix build.
...
This is a follow-up to commit e4d4046999
2021-03-15 22:06:57 +01:00
fcb122b4ed
gnu: xterm: Fix uxterm in pure environments.
...
* gnu/packages/xorg.scm (xterm)[arguments]: Add a 'patch-file-names
phase.
2021-03-15 20:31:24 +01:00
20d090f435
gnu: sudo: Update to 1.9.6p1.
...
* gnu/packages/admin.scm (sudo): Update to 1.9.6p1.
2021-03-15 20:31:24 +01:00
266d55dc30
gnu: ibus-libpinyin: Update to 1.12.0.
...
* gnu/packages/ibus.scm (ibus-libpinyin): Update to 1.12.0.
[arguments]: Enable opencc; include setup files on PYTHONPATH; override
PYTHONPATH instead of prefixing.
[inputs]: Add opencc; remove python-pyxdg.
[license]: Change to GPLv3+.
2021-03-15 15:24:01 +01:00
f9e016baec
gnu: libpinyin: Update to 2.6.0.
...
* gnu/packages/ibus.scm (libpinyin): Update to 2.6.0.
2021-03-15 15:23:50 +01:00
14204d696c
gnu: r-genomicfeatures: Update to 1.42.2.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.42.2.
2021-03-15 15:03:08 +01:00
f10f2745eb
gnu: r-delayedarray: Update to 0.16.2.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.16.2.
2021-03-15 15:03:08 +01:00
1ada8ea96c
gnu: r-scater: Update to 1.18.6.
...
* gnu/packages/bioconductor.scm (r-scater): Update to 1.18.6.
2021-03-15 15:03:08 +01:00
fa6bb614c8
gnu: r-cytoml: Update to 2.2.2.
...
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.2.2.
[inputs]: Add zlib.
2021-03-15 15:03:08 +01:00
11dc49afc2
gnu: r-diffbind: Update to 3.0.14.
...
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.14.
2021-03-15 15:03:07 +01:00
ee61edb621
gnu: r-reportingtools: Update to 2.30.2.
...
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.30.2.
2021-03-15 15:03:07 +01:00
fa227c9640
gnu: r-genomeinfodb: Update to 1.26.4.
...
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.26.4.
2021-03-15 15:03:07 +01:00
b45c625f10
gnu: r-deseq2: Update to 1.30.1.
...
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.30.1.
2021-03-15 15:03:07 +01:00
4ce712aca4
gnu: alacritty: Use more packaged rust libraries.
...
* gnu/packages/terminals.scm (alacritty)[arguments]: Move
rust-bitflags-1, rust-dirs-2, rust-libc-0.2, rust-unicode-width-0.1,
rust-winapi-0.3 from cargo-inputs ...
[inputs]: ... to here.
2021-03-15 15:53:17 +02:00
ca3b97baaa
gnu: rust-dirs-2: Adapt for new build system.
...
* gnu/packages/crates-io.scm (rust-dirs-2)[inputs]: Add rust-cfg-if-0.1,
rust-dirs-sys-0.3.
2021-03-15 15:53:17 +02:00
a4bbebb2b3
gnu: rust-dirs-sys-0.3: Adapt for new build system.
...
* gnu/packages/crates-io.scm (rust-dirs-sys-0.3)[inputs]: Add
rust-cfg-if-0.1, rust-libc-0.2, rust-redox-users-0.3, rust-winapi-0.3.
2021-03-15 15:53:17 +02:00
647dfa788e
gnu: rust-lazy-static-1: Adapt for new build system.
...
* gnu/packages/crates-io.scm (rust-lazy-static-1)[inputs]: Add
rust-spin-0.5.
2021-03-15 15:53:16 +02:00
f69a3fe28c
gnu: alacritty: Use packaged rust-wayland-client.
...
* gnu/packages/terminals.scm (alacritty)[arguments]: Remove
rust-wayland-client-0.28 from cargo-inputs. In custom
'add-absolute-library-references remove substitutions for
rust-wayland-client.
[inputs]: Add rust-wayland-client-0.28.
2021-03-15 15:53:16 +02:00
190e94b278
gnu: rust-glutin-0.26: Adapt for new build system.
...
* gnu/packages/crates-graphics.scm (rust-glutin-0.26)
[arguments]: Don't skip build. Remove rust-wayland-client-0.28 from
cargo-inputs.
[inputs]: Add rust-wayland-client-0.28, rust-wayland-egl-0.28.
2021-03-15 15:53:16 +02:00
87d747860d
gnu: rust-winit-0.24: Adapt for new build system.
...
* gnu/packages/crates-graphics.scm (rust-winit-0.24)[arguments]: Move
rust-wayland-client-0.28 from cargo-inputs ...
[inputs]: ... to here.
2021-03-15 15:53:16 +02:00
6f655caf42
gnu: rust-wayland-server-0.28: Adapt for new build system.
...
* gnu/packages/crates-graphics.scm (rust-wayland-server-0.28)
[arguments]: Don't skip build. Remove rust-wayland-commons-0.28,
rust-wayland-scanner-0.28, rust-wayland-sys-0.28 from cargo-inputs.
[inputs]: Add rust-bitflags-1, rust-downcast-rs-1, rust-lazy-static-1,
rust-libc-0.2, rust-nix-0.18, rust-parking-lot-0.18, rust-scoped-tls-1,
rust-wayland-commons-0.28, rust-wayland-scanner-0.28,
rust-wayland-sys-0.28.
(rust-wayland-server-0.23): Adjust accordingly.
2021-03-15 15:53:16 +02:00
fb6f926193
gnu: rust-wayland-scanner-0.28: Adapt for new build system.
...
* gnu/packages/crates-graphics.scm (rust-wayland-scanner-0.28):
[arguments]: Don't skip build. Remove cargo-inputs.
[inputs]: Add rust-proc-macro2-1, rust-quote-1, rust-xml-rs-0.8.
(rust-wayland-scanner-0.23): Adjust accordingly.
2021-03-15 15:53:16 +02:00
facf27e08b
gnu: rust-wayland-protocols-0.28: Adapt for new build system.
...
* gnu/packages/crates-graphics.scm (rust-wayland-protocols-0.28)
[arguments]: Don't skip build. Remove everything from cargo-inputs
except rust-bitflags-1.
[inputs]: Add rust-bitflags-1, rust-wayland-client-0.28,
rust-wayland-commons-0.28, rust-wayland-scanner-0.28,
rust-wayland-server-0.28.
(rust-wayland-protocols-0.23): Adjust accordingly.
2021-03-15 15:53:16 +02:00
bb06a747b2
gnu: rust-wayland-egl-0.28: Adapt for new build system.
...
* gnu/packages/crates-graphics.scm (rust-wayland-egl-0.28)
[arguments]: Don't skip build. Remove cargo-inputs.
[inputs]: Add rust-wayland-client-0.28, rust-wayland-sys-0.28.
[native-inputs]: Add pkg-config.
2021-03-15 15:53:15 +02:00
3b6ec859c2
gnu: rust-wayland-cursor-0.28: Adapt for new build system.
...
* gnu/packages/crates-graphics.scm (rust-wayland-cursor-0.28)
[arguments]: Don't skip build. Remove rust-wayland-client-0.28 from
cargo-inputs.
[inputs]: Add rust-nix-0.18, rust-wayland-client-0.28, rust-xcursor-0.3.
2021-03-15 15:53:15 +02:00
770e326fdb
gnu: rust-wayland-client-0.28: Adapt for new build system.
...
* gnu/packages/crates-graphics.scm (rust-wayland-client-0.28)
[arguments]: Don't skip build. Remove rust-wayland-commons-0.28,
rust-wayland-scanner-0.28, rust-wayland-sys-0.28 from cargo-inputs.
[inputs]: Add rust-bitflags-1, rust-downcast-rs-1, rust-libc-0.2,
rust-nix-0.18, rust-scoped-tls-1, rust-wayland-commons-0.28,
rust-wayland-scanner-0.28, rust-wayland-sys-0.28.
(rust-wayland-client-0.23): Adjust accordingly.
2021-03-15 15:53:15 +02:00
f35ab79e03
gnu: rust-wayland-commons-0.28: Adapt for new build system.
...
* gnu/packages/crates-graphics.scm (rust-wayland-commons-0.28)
[arguments]: Don't skip build. Remove rust-wayland-sys-0.28 from
cargo-inputs.
[inputs]: Add rust-nix-0.18, rust-once-cell-1, rust-smallvec-1,
rust-wayland-sys-0.28.
(rust-wayland-commons-0.23): Adjust accordingly.
2021-03-15 15:53:15 +02:00
b10c637e48
gnu: rust-libloading-0.6: Update to 0.6.7.
...
* gnu/packages/crates-io.scm (rust-libloading-0.6): Update to 0.6.
[arguments]: Replace rust-cfg-if-0.1 with 1.
[inputs]: Add rust-cfg-if-1, rust-winapi-0.3.
2021-03-15 15:53:15 +02:00
bafeee4f6d
gnu: dlib-0.4: Update to 0.4.2.
...
* gnu/packages/crates-io.scm (rust-dlib-0.4): Update to 0.4.2.
[arguments]: Replace rust-libloading-0.5 with 0.6.
[inputs]: Add rust-libloading-0.6.
2021-03-15 15:53:15 +02:00
358f5d9b1b
gnu: rust-proc-macro2-1: Adapt for new build system.
...
* gnu/packages/crates-io.scm (rust-proc-macro2-1)[inputs]: Add
rust-unicode-xid-0.2.
2021-03-15 15:53:15 +02:00
c805bdd550
gnu: rust-winapi-0.3: Adjust for new build system.
...
* gnu/packages/crates-io.scm (rust-winapi-0.3)[inputs]: Add
rust-winapi-i686-pc-windows-gnu, rust-winapi-x86-64-pc-windows-gnu.
2021-03-15 15:53:14 +02:00
12c699572c
gnu: rust-pkg-config-0.3: Hardcode location of pkg-config.
...
* gnu/packages/crates-io.scm (rust-pkg-config-0.3)[arguments]: Add phase
to hardcode location of pkg-config binary.
2021-03-15 15:53:14 +02:00
d499911432
gnu: rust-pkg-config-0.3: Update to 0.3.19.
...
* gnu/packages/crates-io.scm (rust-pkg-config-0.3): Update to 0.3.19.
2021-03-15 15:53:14 +02:00
4363b542f2
gnu: rust-wayland-sys-0.28: Adapt for new build system.
...
* gnu/packages/crates-graphics.scm (rust-wayland-sys-0.28)[arguments]:
Don't skip build. Add phase to refer explicitly to wayland libraries.
[inputs]: Add rust-dlib-0.4, rust-lazy-static-1, rust-libc-0.2,
rust-pkg-config-0.3.
[propagated-inputs]: Add wayland.
(rust-wayland-sys-0.23): Adjust accordingly.
2021-03-15 15:53:14 +02:00
69c757c45a
gnu: rust-quote-1: Update to 1.0.9.
...
* gnu/packages/crates-io.scm (rust-quote-1): Update to 1.0.9.
2021-03-15 15:53:14 +02:00
bf612ead76
gnu: r-variantannotation: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Move from here...
* gnu/packages/bioconductor.scm (r-variantannotation): ...to here.
2021-03-15 14:06:24 +01:00
082f3c5433
gnu: r-edger: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-edger): Move from here...
* gnu/packages/bioconductor.scm (r-edger): ...to here.
2021-03-15 14:06:16 +01:00
35b62c044e
gnu: r-genomeinfodb: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Move from here...
* gnu/packages/bioconductor.scm (r-genomeinfodb): ...to here.
2021-03-15 14:05:56 +01:00
8d6d75ff39
gnu: r-genomeinfodbdata: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Move from here...
* gnu/packages/bioconductor.scm (r-genomeinfodbdata): ...to here.
[source]: Use 'bioconductor-uri'.
2021-03-15 14:05:47 +01:00
9949f459bf
gnu: r-iranges: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-iranges): Move from here...
* gnu/packages/bioconductor.scm (r-iranges): ...to here.
2021-03-15 14:05:37 +01:00
d64e3a487b
gnu: r-s4vectors: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Move from here...
* gnu/packages/bioconductor.scm (r-s4vectors): ...to here.
2021-03-15 14:05:27 +01:00
852fa82d4c
gnu: r-bioccheck: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-bioccheck): Move from here...
* gnu/packages/bioconductor.scm (r-bioccheck): ...to here.
2021-03-15 14:05:22 +01:00
d5576b6eb7
gnu: r-grohmm: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-grohmm): Move from here...
* gnu/packages/bioconductor.scm (r-grohmm): ...to here.
2021-03-15 14:04:26 +01:00
5ac55aea8b
gnu: r-biocstyle: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Move from here...
* gnu/packages/bioconductor.scm (r-biocstyle): ...to here.
2021-03-15 14:03:21 +01:00
134404b437
gnu: r-biocviews: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-biocviews): Move from here...
* gnu/packages/bioconductor.scm (r-biocviews): ...to here.
2021-03-15 14:03:18 +01:00
53dff6ac8f
gnu: r-rsqlite: Update to 2.2.4.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.4.
2021-03-15 13:45:31 +01:00
2e2cc58681
gnu: r-rcpparmadillo: Update to 0.10.2.2.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.2.2.0.
2021-03-15 13:45:31 +01:00
2fc2983e59
gnu: r-formatr: Update to 1.8.
...
* gnu/packages/statistics.scm (r-formatr): Update to 1.8.
[native-inputs]: Add r-knitr.
2021-03-15 13:45:31 +01:00
fe903cb89d
gnu: r-survival: Update to 3.2-9.
...
* gnu/packages/statistics.scm (r-survival): Update to 3.2-9.
2021-03-15 13:45:31 +01:00
bbc542b53c
gnu: r-textshaping: Update to 0.3.2.
...
* gnu/packages/cran.scm (r-textshaping): Update to 0.3.2.
2021-03-15 13:45:31 +01:00
ea23f17ece
gnu: r-mlr3tuning: Update to 0.8.0.
...
* gnu/packages/cran.scm (r-mlr3tuning): Update to 0.8.0.
2021-03-15 13:45:31 +01:00
921ecdba7c
gnu: r-bbotk: Update to 0.3.1.
...
* gnu/packages/cran.scm (r-bbotk): Update to 0.3.1.
2021-03-15 13:45:31 +01:00
ee92bb9004
gnu: r-workflows: Update to 0.2.2.
...
* gnu/packages/cran.scm (r-workflows): Update to 0.2.2.
[propagated-inputs]: Add r-vctrs.
2021-03-15 13:45:31 +01:00
e4d4046999
gnu: r-spatstat: Update to 2.0-1.
...
* gnu/packages/cran.scm (r-spatstat): Update to 2.0-1.
[propagated-inputs]: Remove r-abind, r-deldir, r-goftest, r-matrix, r-mgcv,
r-nlme, r-polyclip, r-rpart, and r-tensor; add r-spatstat-core,
r-spatstat-geom, and r-spatstat-linnet.
2021-03-15 13:45:31 +01:00
b0036b407c
gnu: r-brms: Update to 2.15.0.
...
* gnu/packages/cran.scm (r-brms): Update to 2.15.0.
2021-03-15 13:45:30 +01:00
7bd5a64303
gnu: r-forecast: Update to 8.14.
...
* gnu/packages/cran.scm (r-forecast): Update to 8.14.
2021-03-15 13:45:30 +01:00
58a2c438d3
gnu: r-lavaan: Update to 0.6-8.
...
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-8.
2021-03-15 13:45:30 +01:00
dae999bc48
gnu: r-parallelly: Update to 1.24.0.
...
* gnu/packages/cran.scm (r-parallelly): Update to 1.24.0.
2021-03-15 13:45:30 +01:00
ecd03401c6
gnu: r-effectsize: Update to 0.4.4.
...
* gnu/packages/cran.scm (r-effectsize): Update to 0.4.4.
2021-03-15 13:45:30 +01:00
b5aa552e63
gnu: r-magick: Update to 2.7.0.
...
* gnu/packages/cran.scm (r-magick): Update to 2.7.0.
2021-03-15 13:45:30 +01:00
dfa052bbc9
gnu: r-blockfest: Update to 2.0.
...
* gnu/packages/cran.scm (r-blockfest): Update to 2.0.
2021-03-15 13:45:30 +01:00
796a2241e3
gnu: r-flextable: Update to 0.6.4.
...
* gnu/packages/cran.scm (r-flextable): Update to 0.6.4.
2021-03-15 13:45:30 +01:00
77e5a20c43
gnu: r-maptools: Update to 1.1-1.
...
* gnu/packages/cran.scm (r-maptools): Update to 1.1-1.
2021-03-15 13:45:30 +01:00
87d3f805b9
gnu: r-utf8: Update to 1.2.1.
...
* gnu/packages/cran.scm (r-utf8): Update to 1.2.1.
[native-inputs]: Add r-knitr.
2021-03-15 13:45:30 +01:00
d163c71e0a
gnu: r-xfun: Update to 0.22.
...
* gnu/packages/cran.scm (r-xfun): Update to 0.22.
2021-03-15 13:45:30 +01:00
70257ad2c0
gnu: r-ipred: Update to 0.9-11.
...
* gnu/packages/cran.scm (r-ipred): Update to 0.9-11.
2021-03-15 13:45:29 +01:00
bfa09fd922
gnu: r-lava: Update to 1.6.9.
...
* gnu/packages/cran.scm (r-lava): Update to 1.6.9.
2021-03-15 13:45:29 +01:00
172da782db
gnu: r-rvest: Update to 1.0.0.
...
* gnu/packages/cran.scm (r-rvest): Update to 1.0.0.
[propagated-inputs]: Add r-lifecycle, r-rlang, and r-tibble.
2021-03-15 13:45:29 +01:00
7bdef3789d
gnu: r-zoo: Update to 1.8-9.
...
* gnu/packages/cran.scm (r-zoo): Update to 1.8-9.
2021-03-15 13:45:29 +01:00
e1240e22f5
gnu: Add r-spatstat-linnet.
...
* gnu/packages/cran.scm (r-spatstat-linnet): New variable.
2021-03-15 13:45:29 +01:00
3ebae705f9
gnu: Add r-spatstat-core.
...
* gnu/packages/cran.scm (r-spatstat-core): New variable.
2021-03-15 13:45:29 +01:00
ddfe3f77a9
gnu: Add r-spatstat-geom.
...
* gnu/packages/cran.scm (r-spatstat-geom): New variable.
2021-03-15 13:45:29 +01:00
78373e394d
gnu: Add r-spatstat-sparse.
...
* gnu/packages/cran.scm (r-spatstat-sparse): New variable.
2021-03-15 13:45:29 +01:00
1ed435bf39
gnu: python-sphobjinv: Fix build.
...
* gnu/packages/sphinx.scm (python-sphobjinv):
[patches]: Remove.
[propagated-inputs]: Add (uncomment) python-certifi.
2021-03-15 12:51:54 +01:00
3096428889
gnu: libcroco/fixed: Make private.
...
* gnu/packages/gnome.scm (libcroco/fixed): Use define instead of
define-public.
2021-03-15 12:22:18 +01:00
8a085c1780
gnu: cyrus-sasl/fixed: Make private.
...
* gnu/packages/cyrus-sasl.scm (cyrus-sasl/fixed): Use define instead of
define-public.
2021-03-15 12:22:17 +01:00
cddf0b8955
gnu: unzip/fixed: Make private.
...
* gnu/packages/compression.scm (unzip/fixed): Use define instead of
define-public.
2021-03-15 12:22:17 +01:00
3e83e99322
gnu: poetry: Update to 1.1.5.
...
* gnu/packages/python-xyz.scm (poetry): Update to 1.1.5.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2021-03-15 11:19:37 +00:00
014fa5cc6b
gnu: python-poetry-core: Update to 1.0.2.
...
* gnu/packages/python-build.scm (python-poetry-core): Update to 1.0.2.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2021-03-15 11:19:35 +00:00
3eeb7dbf04
gnu: r-gkmsvm: Move back to (gnu packages cran).
...
* gnu/packages/bioconductor.scm (r-gkmsvm): Move this variable from here...
* gnu/packages/cran.scm (r-gkmsvm): ...to here.
2021-03-15 12:15:18 +01:00
1daedaa864
gnu: libusb-for-axoloti: Revert to 1.0.23.
...
* gnu/packages/axoloti.scm (libusb-for-axoloti): Revert to 1.0.23, because the
patch does not apply to the latest version.
2021-03-15 12:05:50 +01:00
21bc326b9a
gnu: guile-opengl: Fix linking with libGL.so.
...
* gnu/packages/gl.scm (guile-opengl)[arguments]: Fix reference to libGL.so.
2021-03-15 11:57:56 +01:00
6e0ed09e68
gnu: Add instrain.
...
* gnu/packages/bioinformatics.scm (instrain): New variable.
2021-03-15 11:43:20 +01:00
ad34eb222c
gnu: Add python-drep.
...
* gnu/packages/bioinformatics.scm (python-drep): New variable.
2021-03-15 11:43:20 +01:00
c20813bb08
gnu: Add python-lmfit.
...
* gnu/packages/python-xyz.scm (python-lmfit): New variable.
2021-03-15 11:43:20 +01:00
0bd166253a
gnu: Add python-asteval.
...
* gnu/packages/python-xyz.scm (python-asteval): New variable.
2021-03-15 11:43:19 +01:00
8b85aea49b
gnu: Add python-uncertainties.
...
* gnu/packages/python-xyz.scm (python-uncertainties): New variable.
2021-03-15 11:43:19 +01:00
714a8faa04
gnu: guile-email-latest: Update to 0.2.2-1.ca0520a.
...
* gnu/packages/guile-xyz.scm (guile-email-latest): Update to 0.2.2-1.ca0520a.
2021-03-15 11:43:19 +01:00
c3163fe6b4
gnu: Add r-textplot.
...
* gnu/packages/cran.scm (r-textplot): New variable.
2021-03-15 10:53:22 +01:00
ca3913d1f8
gnu: Add r-btm.
...
* gnu/packages/cran.scm (r-btm): New variable.
2021-03-15 10:53:21 +01:00
20fb147c9a
gnu: Add r-eyelinker.
...
* gnu/packages/cran.scm (r-eyelinker): New variable.
2021-03-15 10:53:20 +01:00
32603dbba9
gnu: Add r-intervals.
...
* gnu/packages/cran.scm (r-intervals): New variable.
2021-03-15 10:53:19 +01:00
181e3c0128
gnu: Add r-rtweet.
...
* gnu/packages/cran.scm (r-rtweet): New variable.
2021-03-15 10:53:18 +01:00
83b6d7a33e
gnu: Add r-rworldmap.
...
* gnu/packages/cran.scm (r-rworldmap): New variable.
2021-03-15 10:53:16 +01:00
3095255b7b
gnu: Add r-tmaptools.
...
* gnu/packages/cran.scm (r-tmaptools): New variable.
2021-03-15 10:53:15 +01:00
82344f5936
gnu: Add r-stars.
...
* gnu/packages/cran.scm (r-stars): New variable.
2021-03-15 10:53:15 +01:00
a1dd43e4cd
gnu: Add r-lwgeom.
...
* gnu/packages/cran.scm (r-lwgeom): New variable.
2021-03-15 10:53:14 +01:00
5ce5e49c10
gnu: Add r-packcircles.
...
* gnu/packages/cran.scm (r-packcircles): New variable.
2021-03-15 10:53:13 +01:00
5d719fe608
gnu: Add r-readtext.
...
* gnu/packages/cran.scm (r-readtext): New variable.
2021-03-15 10:53:12 +01:00
6f688733b5
gnu: Add r-antiword.
...
* gnu/packages/cran.scm (r-antiword): New variable.
2021-03-15 10:53:11 +01:00
275b7987c0
gnu: Add r-pdftools.
...
* gnu/packages/cran.scm (r-pdftools): New variable.
2021-03-15 10:53:10 +01:00
52c70fb66e
gnu: Add r-qpdf.
...
Cannot add to (gnu packages pdf) due to circular module dependency.
* gnu/packages/cran.scm (r-qpdf): New variable.
2021-03-15 10:53:10 +01:00
03af89bd9e
gnu: Add r-readods.
...
* gnu/packages/cran.scm (r-readods): New variable.
2021-03-15 10:53:09 +01:00
cb360afd66
gnu: Add r-streamr
...
* gnu/packages/cran.scm (r-streamr): New variable.
2021-03-15 10:53:08 +01:00
a64e355ea6
gnu: Add r-ndjson.
...
* gnu/packages/cran.scm (r-ndjson): New variable.
2021-03-15 10:53:07 +01:00
ee4ba54271
gnu: gzstream: Add PIC flag.
...
* gnu/packages/compression.scm (gzstream) [arguments]: Add phase 'use-pic.
2021-03-15 10:53:04 +01:00
e415003202
gnu: Add r-striprtf.
...
* gnu/packages/cran.scm (r-striprtf): New variable.
2021-03-15 10:53:03 +01:00
804fad34e8
gnu: Add r-textclean.
...
* gnu/packages/cran.scm (r-textclean): New variable.
2021-03-15 10:53:02 +01:00
584c868fbd
gnu: Add r-english.
...
* gnu/packages/cran.scm (r-english): New variable.
2021-03-15 10:53:01 +01:00
c3a1373c15
gnu: Add r-lexicon.
...
* gnu/packages/cran.scm (r-lexicon): New variable.
2021-03-15 10:53:00 +01:00
bc82567b0b
gnu: Add r-syuzhet.
...
* gnu/packages/cran.scm (r-syuzhet): New variable.
2021-03-15 10:52:59 +01:00
d332c5c7f2
gnu: Add r-textshape.
...
* gnu/packages/cran.scm (r-textshape): New variable.
2021-03-15 10:52:58 +01:00
ed48898931
gnu: Add r-dtt.
...
* gnu/packages/algebra.scm (r-dtt): New variable.
2021-03-15 10:52:57 +01:00
4bc1707dba
gnu: Add r-mgsub.
...
* gnu/packages/cran.scm (r-mgsub): New variable.
2021-03-15 10:52:56 +01:00
ae807fdb37
gnu: Add r-qdapregex.
...
* gnu/packages/cran.scm (r-qdapregex): New variable.
2021-03-15 10:52:55 +01:00
c4e826bbd2
gnu: Add r-esc.
...
* gnu/packages/statistics.scm (r-esc): New variable.
2021-03-15 10:52:52 +01:00
d059485257
gnu: unzip: Remove redundant and unused "unzip-symlink.patch".
...
This is a followup to commit 31d289a475
2021-03-14 19:16:17 -04:00
b082ea9406
gnu: OpenSSL: Refer to the version number in a more robust way.
...
* gnu/packages/tls.scm (openssl)[arguments]: Replace use of VERSION with
(PACKAGE-VERSION THIS-PACKAGE).
(openssl/fixed): Adjust accordingly.
2021-03-14 16:33:12 -04:00
bb2427fa28
gnu: ImageMagick: Refer to the version number in a more robust way.
...
* gnu/packages/imagemagick.scm (imagemagick)[arguments]: Replace use of VERSION
with (PACKAGE-VERSION THIS-PACKAGE).
(imagemagick/fixed): Adjust accordingly.
2021-03-14 16:33:12 -04:00
43cbb05f4b
gnu: libtiff: Refer to the version number in a more robust way.
...
* gnu/packages/image.scm (libtiff)[arguments]: Replace use of VERSION
with (PACKAGE-VERSION THIS-PACKAGE).
(libtiff/fixed): Adjust accordingly.
2021-03-14 16:33:08 -04:00
d4e29f3628
gnu: libhandy: Update to 1.2.0.
...
* gnu/packages/gnome.scm (libhandy): Update to 1.2.0.
2021-03-14 19:47:08 +01:00
cbfcbb79df
ci: Support packages with multiple channels.
...
This is a follow-up of 61a1165340
2021-03-14 19:43:35 +01:00
b76762a9b7
gnu: Update OnionShare to 2.3.1.
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* gnu/packages/tor.scm (onionshare-cli): New variable.
(onionshare): Inherit from onionshare-cli.
[arguments]: Add patch-tests and install-data phases. Adjust check phase for
new tests.
[inputs]: Remove python-pycryptodome, python-nautilus, python-sip,
python-stem, and python-pyqt. Add onionshare-cli, python-shiboken-2,
python-pyside-2, python-qrcode.
[description]: Use new upstream description.
2021-03-14 13:24:22 -05:00
620206b680
gnu: python-eventlet: Add missing dependencies.
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* gnu/packages/python-xyz.scm (python-eventlet)[propagated-inputs]: Add
python-dnspython and python-monotonic.
2021-03-14 13:24:22 -05:00
5a31eb7d35
gnu: Add python-flask-socketio.
...
* gnu/packages/python-web.scm (python-flask-socketio): New variable.
2021-03-14 13:24:21 -05:00
078f3288e2
gnu: Add python-socketio.
...
* gnu/packages/python-web.scm (python-socketio): New variable.
2021-03-14 13:24:21 -05:00
7164d2105a
gnu: Add python-engineio
...
* gnu/packages/python-web.scm (python-engineio): New variable.
2021-03-14 13:24:21 -05:00
af25357b7d
gnu: Add python-bidict.
...
* gnu/packages/python-xyz.scm (python-bidict): New variable.
2021-03-14 13:24:21 -05:00
30f5381487
gnu: Add python-sortedcollections.
...
* gnu/packages/python-xyz.scm (python-sortedcollections): New variable.
2021-03-14 13:24:21 -05:00
Guillaume Le Vaillant
João Pedro Simas
Chris Marusich
Leo Le Bouter
Efraim Flashner
Leo Famulari
Raghav Gururajan
zimoun
Julien Lepiller
ZmnSCPxj
Christopher Baines
Tobias Geerinckx-Rice
Mathieu Othacehe
Mark H Weaver
Vinicius Monego
Nicolas Goaziou
Leo Prikler
la snesne
Vagrant Cascadian
Timothy Sample
Xinglu Chen
Alexandr Vityazev
Hong Li
Ricardo Wurmus
Pierre Neidhardt
Felix Gruber
Ludovic Courtès
Jelle Licht
Raghav Gururajan
Vinícius dos Santos Oliveira
Vagrant Cascadian
nixo
Maxim Cournoyer
Greg Hogan
EuAndreh
David Thompson
Yoav Marco
jgart
Boris A. Dekshteyn
Ludovic Courtès
Marius Bakke
Ryan Prior via Guix-patches via
Morgan Smith
qblade
Maxime Devos
Oleg Pykhalov
LibreMiami
Kei Kebreau
Stefan Reichör
Tanguy Le Carrour
Lars-Dominik Braun
Eric Bavier