bf3722f9db
gnu: r-depecher: Update to 1.2.2.
...
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.2.
[native-inputs]: Add r-knitr.
2020-03-07 19:31:47 +01:00
a2512e436b
gnu: r-xcms: Update to 3.8.2.
...
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.2.
2020-03-07 19:31:47 +01:00
f0aaa4482a
gnu: r-yamss: Update to 1.12.1.
...
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.1.
2020-03-07 19:31:47 +01:00
b69c770305
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.10.0.
...
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Update to 3.10.0.
2020-03-02 21:46:27 +01:00
5f5e0830f6
gnu: r-multiassayexperiment: Update to 1.12.3.
...
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.3.
2020-03-01 23:38:33 +01:00
e766ba9a52
gnu: r-cicero: Update to 1.4.2.
...
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.2.
2020-03-01 23:38:26 +01:00
0a30342def
gnu: r-mlinterfaces: Update to 1.66.4.
...
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.4.
2020-03-01 23:38:19 +01:00
aece78fe2f
gnu: r-biocneighbors: Update to 1.4.2.
...
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.4.2.
2020-03-01 23:38:12 +01:00
8351faae8a
gnu: r-chippeakanno: Update to 3.20.1.
...
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.20.1.
2020-03-01 23:38:06 +01:00
975cfe26e1
gnu: r-gkmsvm: Update to 0.80.0.
...
* gnu/packages/bioconductor.scm (r-gkmsvm): Update to 0.80.0.
[propagated-inputs]: Remove r-biocgenerics, r-biostrings, r-genomeinfodb,
r-iranges, r-rtracklayer, and r-s4vectors.
2020-03-01 23:21:15 +01:00
c51c0033d0
gnu: Add r-bsgenome-hsapiens-ncbi-grch38.
...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ncbi-grch38): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-02-25 15:37:27 +01:00
5bf7102265
gnu: r-genomicinteractions: Update to 1.20.1.
...
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.1.
2020-02-22 23:39:27 +01:00
5ea4f604ab
gnu: r-cicero: Update to 1.4.1.
...
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.1.
[propagated-inputs]: Add r-tidyr.
2020-02-22 23:39:20 +01:00
8017eb0ae8
gnu: r-ggm: Move to (gnu packages bioconductor).
...
* gnu/packages/cran.scm (r-ggm): Move this variable from here...
* gnu/packages/bioconductor.scm (r-ggm): ...to here.
2020-02-22 20:42:15 +01:00
d66901e2c3
gnu: r-depecher: Update to 1.2.1.
...
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.1.
2020-02-19 23:00:13 +01:00
f607098f05
gnu: r-mixomics: Update to 6.10.8.
...
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.8.
2020-02-19 23:00:08 +01:00
e01fa33baa
gnu: r-rsubread: Update to 2.0.1.
...
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.0.1.
2020-02-19 23:00:02 +01:00
f86549cbb6
gnu: r-atacseqqc: Update to 1.10.2.
...
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.2.
2020-02-19 22:59:56 +01:00
776e98fe05
gnu: r-heatplus: Update to 2.32.1.
...
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.32.1.
2020-02-19 22:59:49 +01:00
effbf7d986
gnu: r-biocsingular: Update to 1.2.2.
...
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.2.
2020-02-19 22:59:44 +01:00
b7e86efd3b
gnu: r-inspect: Update to 1.16.3.
...
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.3.
2020-02-19 22:59:35 +01:00
be1042b326
gnu: r-nmf: Update to 0.22.0.
...
* gnu/packages/bioconductor.scm (r-nmf): Update to 0.22.0.
[propagated-inputs]: Add r-biobase and r-biocmanager.
2020-02-19 18:57:31 +01:00
7c9d8a5d58
gnu: r-nmf: Move to (gnu packages bioconductor).
...
* gnu/packages/statistics.scm (r-nmf): Move this variable from here...
* gnu/packages/bioconductor.scm (r-nmf): ...to here.
2020-02-19 18:46:22 +01:00
c756328e66
gnu: r-lpsymphony: Use HTTPS home page.
...
* gnu/packages/bioconductor.scm (r-lpsymphony)[home-page]: Use HTTPS.
2020-02-11 07:10:31 +01:00
5e1f2362c1
gnu: r-codedepends: Use HTTPS home page.
...
* gnu/packages/bioconductor.scm (r-codedepends)[home-page]: Use HTTPS.
2020-02-11 07:10:31 +01:00
798ca8d08e
gnu: r-multiassayexperiment: Use HTTPS home page.
...
* gnu/packages/bioconductor.scm (r-multiassayexperiment)[home-page]: Use HTTPS.
2020-02-11 07:10:29 +01:00
a38bf7c843
gnu: Add r-deconstructsigs.
...
* gnu/packages/bioconductor.scm (r-deconstructsigs): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-01-27 22:31:19 +01:00
0dfaebfa2e
gnu: r-multiassayexperiment: Update to 1.12.2.
...
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.2.
2020-01-27 20:48:36 +01:00
c5d75df366
gnu: r-ropls: Update to 1.18.8.
...
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.8.
2020-01-27 20:48:36 +01:00
062cbc4f2b
gnu: r-destiny: Update to 3.0.1.
...
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.0.1.
2020-01-27 20:48:36 +01:00
fd6412cd2c
gnu: r-metap: Update to 1.3.
...
* gnu/packages/bioconductor.scm (r-metap): Update to 1.3.
2020-01-27 16:33:27 +01:00
5b98473a1f
gnu: r-biocset: Fix spelling of "ability".
...
* gnu/packages/bioconductor (r-biocset)[description]: Fix typo.
2020-01-24 02:38:13 -08:00
99db6db7be
gnu: Use HTTPS for bioconductor.org.
...
* gnu/packages/bioinformatics.scm (r-homo-sapiens)[source]: Use HTTPS.
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked,
r-cghcall, r-diffbind, r-cghbase, r-ripseeker, r-chippeakanno,
r-qdnaseq, r-marray, r-multtest)[home-page]: Likewise.
* gnu/packages/graph.scm (r-rgraphviz)[home-page]: Likewise.
2020-01-21 00:43:39 +01:00
d1ac643062
gnu: r-variancepartition: Update to 1.16.1.
...
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.16.1.
2020-01-16 06:53:31 +01:00
e8ccb98a08
gnu: r-flowworkspace: Update to 3.34.1.
...
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 3.34.1.
2020-01-16 06:53:31 +01:00
3f42bd81a5
gnu: r-ropls: Update to 1.18.6.
...
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.6.
2020-01-16 06:53:31 +01:00
516fa945b3
gnu: r-mlinterfaces: Update to 1.66.2.
...
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.2.
[propagated-inputs]: Remove r-rda.
2020-01-16 06:53:31 +01:00
ac9a9c374c
gnu: r-clusterprofiler: Update to 3.14.3.
...
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.3.
2020-01-16 06:53:31 +01:00
99e2a24978
gnu: r-inspect: Update to 1.16.2.
...
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.2.
2020-01-16 06:53:31 +01:00
7a8fcdaccc
gnu: r-regioner: Update to 1.18.1.
...
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.18.1.
2020-01-16 06:53:31 +01:00
f8f181ae41
gnu: r-affycoretools: Update to 1.58.4.
...
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.4.
[propagated-inputs]: Add r-glimma.
2020-01-16 06:53:31 +01:00
bd824de3ad
gnu: r-inspect: Update to 1.16.1.
...
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.1.
[propagated-inputs]: Add r-gdata.
2019-12-27 21:30:26 +01:00
c314ff7cd4
gnu: r-multiassayexperiment: Update to 1.12.1.
...
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.1.
2019-12-27 21:30:26 +01:00
0718948912
gnu: r-rgadem: Update to 2.34.1.
...
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.34.1.
[propagated-inputs]: Add r-genomicranges.
2019-12-27 21:30:26 +01:00
0be4d7de9c
gnu: r-clusterprofiler: Update to 3.14.2.
...
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.2.
2019-12-27 21:30:26 +01:00
7621bf2d19
gnu: r-enrichplot: Update to 1.6.1.
...
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.6.1.
2019-12-27 21:30:26 +01:00
eb6d1adf15
gnu: r-biocsingular: Update to 1.2.1.
...
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.1.
2019-12-27 21:30:26 +01:00
be94400cd4
gnu: r-affycoretools: Update to 1.58.3.
...
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.3.
2019-12-27 21:30:26 +01:00
77e2de3654
gnu: Add r-biodist.
...
* gnu/packages/bioconductor.scm (r-biodist): New variable.
2019-12-18 15:29:08 +01:00
0156297f29
gnu: Add r-biocworkflowtools.
...
* gnu/packages/bioconductor.scm (r-biocworkflowtools): New variable.
2019-12-18 15:29:08 +01:00
43b66e3f7c
gnu: Add r-biocset.
...
* gnu/packages/bioconductor.scm (r-biocset): New variable.
2019-12-18 15:29:08 +01:00
4a18112dfb
gnu: Add r-biocpkgtools.
...
* gnu/packages/bioconductor.scm (r-biocpkgtools): New variable.
2019-12-18 15:29:08 +01:00
4d12c1e335
gnu: Add r-biocor.
...
* gnu/packages/bioconductor.scm (r-biocor): New variable.
2019-12-18 15:29:08 +01:00
c2b36a0441
gnu: Add r-bioconcotk.
...
* gnu/packages/bioconductor.scm (r-bioconcotk): New variable.
2019-12-18 15:29:08 +01:00
0678479391
gnu: Add r-multiassayexperiment.
...
* gnu/packages/bioconductor.scm (r-multiassayexperiment): New variable.
2019-12-18 15:29:08 +01:00
244270e6ae
gnu: Add r-experimenthub.
...
* gnu/packages/bioconductor.scm (r-experimenthub): New variable.
2019-12-18 15:29:07 +01:00
49f0860be0
gnu: Add r-biocgraph.
...
* gnu/packages/bioconductor.scm (r-biocgraph): New variable.
2019-12-18 15:29:07 +01:00
f180be2923
gnu: Add r-bioccasestudies.
...
* gnu/packages/bioconductor.scm (r-bioccasestudies): New variable.
2019-12-18 15:29:07 +01:00
21afe920f1
gnu: Add r-ebarrays.
...
* gnu/packages/bioconductor.scm (r-ebarrays): New variable.
2019-12-18 15:29:07 +01:00
f388834e11
gnu: Add r-reactomepa.
...
* gnu/packages/bioconductor.scm (r-reactomepa): New variable.
2019-12-18 15:29:07 +01:00
c373223e63
gnu: Add r-graphite.
...
* gnu/packages/bioconductor.scm (r-graphite): New variable.
2019-12-18 15:29:07 +01:00
ff1146b9b1
gnu: Add r-curatedtcgadata.
...
* gnu/packages/bioconductor.scm (r-curatedtcgadata): New variable.
2019-12-18 15:29:07 +01:00
6f15ea2415
gnu: Add r-reactome-db.
...
* gnu/packages/bioconductor.scm (r-reactome-db): New variable.
2019-12-18 15:29:07 +01:00
29fd736a66
gnu: Add r-biobroom.
...
* gnu/packages/bioconductor.scm (r-biobroom): New variable.
2019-12-17 20:02:18 +01:00
48bcbef07a
gnu: Add r-bioassayr.
...
* gnu/packages/bioconductor.scm (r-bioassayr): New variable.
2019-12-17 20:02:18 +01:00
991554fc92
gnu: Add r-chemminer.
...
* gnu/packages/bioconductor.scm (r-chemminer): New variable.
2019-12-17 20:02:18 +01:00
d38775b13f
gnu: Add r-bigpint.
...
* gnu/packages/bioconductor.scm (r-bigpint): New variable.
2019-12-17 20:02:18 +01:00
820373dbc8
gnu: Add r-bigmemoryextras.
...
* gnu/packages/bioconductor.scm (r-bigmemoryextras): New variable.
2019-12-17 20:02:18 +01:00
6ca6f8663b
gnu: Add r-biggr.
...
* gnu/packages/bioconductor.scm (r-biggr): New variable.
2019-12-17 20:02:17 +01:00
5aef09bd0e
gnu: Add r-hyperdraw.
...
* gnu/packages/bioconductor.scm (r-hyperdraw): New variable.
2019-12-17 20:02:17 +01:00
75a8bb3185
gnu: Add r-hypergraph.
...
* gnu/packages/bioconductor.scm (r-hypergraph): New variable.
2019-12-17 20:02:17 +01:00
e823337c6e
gnu: Add r-rsbml.
...
* gnu/packages/bioconductor.scm (r-rsbml): New variable.
2019-12-17 20:02:17 +01:00
40fe63ad8a
gnu: Add r-bifet.
...
* gnu/packages/bioconductor.scm (r-bifet): New variable.
2019-12-17 20:02:17 +01:00
de9374b73c
gnu: Add r-bicare.
...
* gnu/packages/bioconductor.scm (r-bicare): New variable.
2019-12-17 20:02:17 +01:00
6bd50acf41
gnu: Add r-bhc.
...
* gnu/packages/bioconductor.scm (r-bhc): New variable.
2019-12-17 20:02:16 +01:00
75eb1149f3
gnu: Add r-bgx.
...
* gnu/packages/bioconductor.scm (r-bgx): New variable.
2019-12-17 20:02:16 +01:00
d11d6feafa
gnu: Add r-bgmix.
...
* gnu/packages/bioconductor.scm (r-bgmix): New variable.
2019-12-17 20:02:16 +01:00
6e10ac0780
gnu: r-destiny: Update to 3.0.0.
...
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.0.0.
[propagated-inputs]: Add r-ggplot-multistats, r-irlba, r-knn-covertree,
r-pcamethods, r-rcpphnsw, r-rspectra, r-singlecellexperiment, r-tidyr, and
r-tidyselect; remove r-igraph.
2019-12-15 15:39:13 +01:00
b4ee414880
gnu: r-siggenes: Update to 1.60.0.
...
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.60.0.
2019-12-15 15:39:13 +01:00
4efdac562b
gnu: r-bumphunter: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.28.0.
2019-12-15 15:39:13 +01:00
dfd4287cba
gnu: r-minfi: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.32.0.
2019-12-15 15:39:13 +01:00
b57cffb974
gnu: r-methylumi: Update to 2.32.0.
...
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.32.0.
2019-12-15 15:39:13 +01:00
8f7bc872e1
gnu: r-lumi: Update to 2.38.0.
...
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.38.0.
2019-12-15 15:39:13 +01:00
a2877d6970
gnu: r-linnorm: Update to 2.10.0.
...
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.10.0.
2019-12-15 15:39:12 +01:00
1b890c3231
gnu: r-ioniser: Update to 2.10.0.
...
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.10.0.
2019-12-15 15:39:12 +01:00
a18f325e0a
gnu: r-triform: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-triform): Update to 1.28.0.
2019-12-15 15:39:12 +01:00
9b72bbf784
gnu: r-varianttools: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.28.0.
2019-12-15 15:39:12 +01:00
9f218627d6
gnu: r-heatplus: Update to 2.32.0.
...
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.32.0.
2019-12-15 15:39:12 +01:00
c245ec3d49
gnu: r-gosemsim: Update to 2.12.0.
...
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.0.
2019-12-15 15:39:12 +01:00
5ed767521c
gnu: r-anota: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-anota): Update to 1.34.0.
2019-12-15 15:39:12 +01:00
869965df1c
gnu: r-sigpathway: Update to 1.54.0.
...
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.54.0.
2019-12-15 15:39:12 +01:00
b4e1268c7b
gnu: r-fgsea: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.12.0.
2019-12-15 15:39:12 +01:00
166b3c2da6
gnu: r-dose: Update to 3.12.0.
...
* gnu/packages/bioconductor.scm (r-dose): Update to 3.12.0.
2019-12-15 15:39:12 +01:00
0654a9bc3b
gnu: r-enrichplot: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.6.0.
[propagated-inputs]: Remove r-upsetr.
2019-12-15 15:39:11 +01:00
08c01b7e0e
gnu: r-clusterprofiler: Update to 3.14.0.
...
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.0.
2019-12-15 15:39:11 +01:00
6374984a20
gnu: r-mlinterfaces: Update to 1.66.0.
...
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.0.
2019-12-15 15:39:11 +01:00
fc4a9dd579
gnu: r-annaffy: Update to 1.58.0.
...
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.58.0.
2019-12-15 15:39:11 +01:00
4ed18ddc0f
gnu: r-a4core: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
102b982cbe
gnu: r-a4classif: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
d6859c7c9b
gnu: r-a4preproc: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
977a7802c1
gnu: r-a4reporting: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
85c945aa97
gnu: r-a4base: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
344eb4c404
gnu: r-a4: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-a4): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
aef4b34669
gnu: r-abseqr: Update to 1.4.0.
...
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.4.0.
2019-12-15 15:39:10 +01:00
32b471f4a7
gnu: r-bacon: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.14.0.
2019-12-15 15:39:10 +01:00
6dfe5056c9
gnu: r-rgadem: Update to 2.34.0.
...
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.34.0.
2019-12-15 15:39:10 +01:00
35a1b3ec4c
gnu: r-motiv: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-motiv): Update to 1.42.0.
[propagated-inputs]: Add r-genomicranges.
2019-12-15 15:39:10 +01:00
dda936ca9a
gnu: r-motifstack: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.30.0.
[propagated-inputs]: Add r-ggplot2.
2019-12-15 15:39:10 +01:00
e89f16e646
gnu: r-genomicscores: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 1.10.0.
2019-12-15 15:39:10 +01:00
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gnu: r-atacseqqc: Update to 1.10.1.
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* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.1.
2019-12-15 15:39:10 +01:00
4997e0254a
gnu: r-gofuncr: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.6.0.
2019-12-15 15:39:10 +01:00
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gnu: r-abaenrichment: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.16.0.
2019-12-15 15:39:10 +01:00
3a731c8334
gnu: r-annotationfuncs: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.36.0.
2019-12-15 15:39:10 +01:00
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gnu: r-annotationtools: Update to 1.60.0.
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* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.60.0.
2019-12-15 15:39:10 +01:00
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gnu: r-allelicimbalance: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.24.0.
2019-12-15 15:39:10 +01:00
3a35d27450
gnu: r-aucell: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-aucell): Update to 1.8.0.
[propagated-inputs]: Add r-biocgenerics and r-s4vectors.
2019-12-15 15:39:09 +01:00
ca7192a1c9
gnu: r-ebimage: Update to 4.28.1.
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* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.28.1.
2019-12-15 15:39:09 +01:00
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gnu: r-yamss: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.0.
2019-12-15 15:39:09 +01:00
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gnu: r-gtrellis: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.18.0.
2019-12-15 15:39:09 +01:00
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gnu: r-somaticsignatures: Update to 2.22.0.
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* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.22.0.
2019-12-15 15:39:09 +01:00
580e434267
gnu: r-yapsa: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.12.0.
2019-12-15 15:39:09 +01:00
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gnu: r-gcrma: Update to 2.58.0.
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* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.58.0.
2019-12-15 15:39:09 +01:00
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gnu: r-simpleaffy: Update to 2.62.0.
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* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.62.0.
2019-12-15 15:39:09 +01:00
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gnu: r-yaqcaffy: Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.46.0.
2019-12-15 15:39:09 +01:00
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gnu: r-quantro: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-quantro): Update to 1.20.0.
2019-12-15 15:39:09 +01:00
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gnu: r-yarn: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-yarn): Update to 1.12.0.
2019-12-15 15:39:08 +01:00
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gnu: r-roar: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-roar): Update to 1.22.0.
2019-12-15 15:39:08 +01:00
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gnu: r-xbseq: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.18.0.
2019-12-15 15:39:08 +01:00
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gnu: r-massspecwavelet: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.52.0.
2019-12-15 15:39:08 +01:00
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gnu: r-xcms: Update to 3.8.1.
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* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.1.
[propagated-inputs]: Add r-iranges.
2019-12-15 15:39:08 +01:00
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gnu: r-wrench: Update to 1.4.0.
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* gnu/packages/bioconductor.scm (r-wrench): Update to 1.4.0.
2019-12-15 15:39:08 +01:00
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gnu: r-wiggleplotr: Update to 1.10.1.
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* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.10.1.
2019-12-15 15:39:08 +01:00
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gnu: r-widgettools: Update to 1.64.0.
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* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.64.0.
2019-12-15 15:39:08 +01:00
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gnu: r-webbioc: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.58.0.
2019-12-15 15:39:08 +01:00
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gnu: r-zfpkm: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.8.0.
2019-12-15 15:39:08 +01:00
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gnu: r-rbowtie2: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.8.0.
2019-12-15 15:39:08 +01:00
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gnu: r-progeny: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-progeny): Update to 1.8.0.
2019-12-15 15:39:08 +01:00
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gnu: r-arrmnormalization: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.26.0.
2019-12-15 15:39:07 +01:00
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gnu: r-biocfilecache: Update to 1.10.2.
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* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.10.2.
2019-12-15 15:39:07 +01:00
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gnu: r-iclusterplus: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.22.0.
2019-12-15 15:39:07 +01:00
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gnu: r-rbowtie: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.26.0.
2019-12-15 15:39:07 +01:00
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gnu: r-sgseq: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.20.0.
2019-12-15 15:39:07 +01:00
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gnu: r-rhisat2: Update to 1.2.0.
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* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.2.0.
[arguments]: Add phase to make package reproducible and to avoid shelling out
to 'which'.
[native-inputs]: Remove which.
2019-12-15 15:39:07 +01:00
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gnu: r-quasr: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-quasr): Update to 1.26.0.
2019-12-15 15:39:07 +01:00
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gnu: r-rqc: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-rqc): Update to 1.20.0.
2019-12-15 15:39:07 +01:00
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gnu: r-birewire: Update to 3.18.0.
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* gnu/packages/bioconductor.scm (r-birewire): Update to 3.18.0.
2019-12-15 15:39:07 +01:00
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gnu: r-birta: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-birta): Update to 1.30.0.
2019-12-15 15:39:07 +01:00
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gnu: r-ropls: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.0.
[propagated-inputs]: Add r-multidataset.
2019-12-15 15:39:06 +01:00
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gnu: r-biosigner: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.0.
[propagated-inputs]: Add r-multidataset.
2019-12-15 15:39:06 +01:00
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gnu: r-annotatr: Update to 1.12.1.
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* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.12.1.
2019-12-15 15:39:06 +01:00
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gnu: r-rsubread: Update to 2.0.0.
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* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.0.0.
2019-12-15 15:39:06 +01:00
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gnu: r-flowutils: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.50.0.
2019-12-15 15:39:06 +01:00
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gnu: r-consensusclusterplus: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.50.0.
2019-12-15 15:39:06 +01:00
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gnu: r-flowcore: Update to 1.52.1.
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* gnu/packages/bioconductor.scm (r-flowcore): Update to 1.52.1.
[propagated-inputs]: Remove r-corpcor, r-graph, r-mass, and r-rrcov; add
r-cytolib.
2019-12-15 15:39:06 +01:00
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gnu: r-flowmeans: Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.46.0.
2019-12-15 15:39:06 +01:00
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gnu: r-flowsom: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.18.0.
[propagated-inputs]: Add r-cytoml, r-flowworkspace, and r-rcolorbrewer; remove
r-flowutils.
2019-12-15 15:39:06 +01:00
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gnu: r-mixomics: Update to 6.10.6.
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* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.6.
2019-12-15 15:39:06 +01:00
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gnu: r-rcistarget: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.6.0.
2019-12-15 15:39:06 +01:00
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gnu: r-cicero: Update to 1.4.0.
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* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.0.
2019-12-15 15:39:06 +01:00
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gnu: r-genie3: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-genie3): Update to 1.8.0.
2019-12-15 15:39:06 +01:00
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gnu: r-roc: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-roc): Update to 1.62.0.
[propagated-inputs]: Add r-knitr.
2019-12-15 15:39:05 +01:00
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gnu: r-watermelon: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.30.0.
2019-12-15 15:39:05 +01:00
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gnu: r-gdsfmt: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.22.0.
2019-12-15 15:39:05 +01:00
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gnu: r-bigmelon: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.12.0.
2019-12-15 15:39:05 +01:00
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gnu: r-seqbias: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.34.0.
2019-12-15 15:39:05 +01:00
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gnu: r-reqon: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-reqon): Update to 1.32.0.
2019-12-15 15:39:05 +01:00
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gnu: r-wavcluster: Update to 2.20.0.
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* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.20.0.
2019-12-15 15:39:05 +01:00
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gnu: r-timeseriesexperiment: Update to 1.4.0.
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* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.4.0.
2019-12-15 15:39:05 +01:00
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gnu: r-variantfiltering: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.22.0.
2019-12-15 15:39:05 +01:00
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gnu: r-genomegraphs: Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-genomegraphs): Update to 1.46.0.
2019-12-15 15:39:05 +01:00
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gnu: r-wavetiling: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-wavetiling): Update to 1.28.0.
2019-12-15 15:39:05 +01:00
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gnu: r-variancepartition: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.16.0.
2019-12-15 15:39:05 +01:00
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gnu: r-htqpcr: Update to 1.40.0.
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* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.40.0.
2019-12-15 15:39:04 +01:00
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gnu: r-unifiedwmwqpcr: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.22.0.
2019-12-15 15:39:04 +01:00
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gnu: r-illuminaio: Update to 0.28.0.
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* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.28.0.
2019-12-15 15:38:56 +01:00
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gnu: r-geoquery: Update to 2.54.1.
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* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.54.1.
2019-12-15 15:38:56 +01:00
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gnu: r-scone: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-scone): Update to 1.10.0.
2019-12-15 15:38:56 +01:00
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gnu: r-scdd: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-scdd): Update to 1.10.0.
2019-12-15 15:38:56 +01:00
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gnu: r-noiseq: Update to 2.30.0.
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* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.30.0.
2019-12-15 15:38:56 +01:00
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gnu: r-monocle: Update to 2.14.0.
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* gnu/packages/bioconductor.scm (r-monocle): Update to 2.14.0.
2019-12-15 15:38:56 +01:00
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gnu: r-mast: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-mast): Update to 1.12.0.
[propagated-inputs]: Remove r-blme.
2019-12-15 15:38:56 +01:00
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gnu: r-icobra: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-icobra): Update to 1.14.0.
2019-12-15 15:38:55 +01:00
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gnu: r-ihw: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-ihw): Update to 1.14.0.
2019-12-15 15:38:55 +01:00
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gnu: r-lpsymphony: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.14.0.
2019-12-15 15:38:55 +01:00
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gnu: r-ebseq: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.26.0.
2019-12-15 15:38:55 +01:00
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gnu: r-deds: Update to 1.60.0.
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* gnu/packages/bioconductor.scm (r-deds): Update to 1.60.0.
2019-12-15 15:38:55 +01:00
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gnu: r-dnacopy: Update to 1.60.0.
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* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.60.0.
2019-12-15 15:38:55 +01:00
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gnu: r-copynumber: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.26.0.
2019-12-15 15:38:55 +01:00
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gnu: r-chipexoqual: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.10.0.
2019-12-15 15:38:55 +01:00
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gnu: r-savr: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-savr): Update to 1.24.0.
2019-12-15 15:38:55 +01:00
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gnu: r-biocsingular: Update to 1.2.0.
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* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.0.
2019-12-15 15:38:55 +01:00
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gnu: r-biocneighbors: Update to 1.4.1.
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* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.4.1.
[propagated-inputs]: Remove r-biocgenerics; add r-matrix.
2019-12-15 15:38:55 +01:00
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gnu: r-ruvseq: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.20.0.
2019-12-15 15:38:55 +01:00
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gnu: r-dnabarcodes: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.16.0.
2019-12-15 15:38:55 +01:00
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gnu: r-inspect: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.0.
[propagated-inputs]: Remove r-preprocesscore; add r-genomeinfodb and r-kernsmooth.
2019-12-15 15:38:55 +01:00
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gnu: r-plgem: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-plgem): Update to 1.58.0.
2019-12-15 15:38:54 +01:00
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gnu: r-rots: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-rots): Update to 1.14.0.
2019-12-15 15:38:54 +01:00
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gnu: r-glimma: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-glimma): Update to 1.14.0.
2019-12-15 15:38:54 +01:00
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gnu: r-goseq: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-goseq): Update to 1.38.0.
2019-12-15 15:38:54 +01:00
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gnu: r-ctc: Update to 1.60.0.
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* gnu/packages/bioconductor.scm (r-ctc): Update to 1.60.0.
2019-12-15 15:38:54 +01:00
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gnu: r-genomicinteractions: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.0.
2019-12-15 15:38:54 +01:00
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gnu: r-interactionset: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.14.0.
2019-12-15 15:38:54 +01:00
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gnu: r-riboseqr: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.20.0.
2019-12-15 15:38:54 +01:00
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gnu: r-riboprofiling: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.16.0.
2019-12-15 15:38:54 +01:00
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gnu: r-chipcomp: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.16.0.
2019-12-15 15:38:54 +01:00
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gnu: r-bayseq: Update to 2.20.0.
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* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.20.0.
2019-12-15 15:38:54 +01:00
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gnu: r-qdnaseq: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.22.0.
[propagated-inputs]: Remove r-biocparallel; add r-future and r-future-apply.
2019-12-15 15:38:54 +01:00
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gnu: r-cghcall: Update to 2.48.0.
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* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.48.0.
2019-12-15 15:38:54 +01:00
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gnu: r-cghbase: Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.46.0.
2019-12-15 15:38:54 +01:00
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gnu: r-marray: Update to 1.64.0.
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* gnu/packages/bioconductor.scm (r-marray): Update to 1.64.0.
2019-12-15 15:38:54 +01:00
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gnu: r-chippeakanno: Update to 3.20.0.
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* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.20.0.
2019-12-15 15:38:53 +01:00
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gnu: r-graph: Update to 1.64.0.
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* gnu/packages/bioconductor.scm (r-graph): Update to 1.64.0.
2019-12-15 15:38:53 +01:00
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gnu: r-multtest: Update to 2.42.0.
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* gnu/packages/bioconductor.scm (r-multtest): Update to 2.42.0.
2019-12-15 15:38:53 +01:00
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gnu: r-ripseeker: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.26.0.
2019-12-15 15:38:53 +01:00
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gnu: r-diffbind: Update to 2.14.0.
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* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.14.0.
2019-12-15 15:38:53 +01:00
bcf711b58b
gnu: r-qvalue: Update to 2.18.0.
...
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.18.0.
2019-12-15 15:38:53 +01:00
084c651cbf
gnu: r-oligo: Update to 1.50.0.
...
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.50.0.
2019-12-15 15:38:53 +01:00
79820b9fe9
gnu: r-oligoclasses: Update to 1.48.0.
...
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.48.0.
2019-12-15 15:38:53 +01:00
7778e91a2d
gnu: r-geneplotter: Update to 1.64.0.
...
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.64.0.
2019-12-15 15:38:53 +01:00
7ccbaf1b6e
gnu: r-reportingtools: Update to 2.26.0.
...
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.26.0.
2019-12-15 15:38:53 +01:00
2e73ea955b
gnu: r-regioner: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.18.0.
2019-12-15 15:38:53 +01:00
ddd3673928
gnu: r-hpar: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.28.0.
2019-12-15 15:38:53 +01:00
7a111924ee
gnu: r-annotate: Update to 1.64.0.
...
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.64.0.
2019-12-15 15:38:52 +01:00
ce5162d09d
gnu: r-affxparser: Update to 1.58.0.
...
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.58.0.
2019-12-15 15:38:52 +01:00
1693534f76
gnu: r-affycoretools: Update to 1.58.2.
...
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.2.
2019-12-15 15:38:52 +01:00
f561421d04
gnu: r-affycontam: Update to 1.44.0.
...
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.44.0.
2019-12-15 15:38:52 +01:00
c2fa63e905
gnu: r-affycompatible: Update to 1.46.0.
...
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.46.0.
2019-12-15 15:38:52 +01:00
5d87f12615
gnu: r-affycomp: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.62.0.
2019-12-15 15:38:52 +01:00
be5e4e9615
gnu: r-biocgenerics: Update to 0.32.0.
...
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.32.0.
2019-12-15 15:38:52 +01:00
2c8433ca0a
gnu: r-depecher: Update to 1.2.0.
...
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.0.
[arguments]: Remove field.
[propagated-inputs]: Remove r-biocparallel; add r-fnn and r-robustbase.
2019-12-15 15:38:52 +01:00
7a62d5e0c2
gnu: Add r-cytoml.
...
* gnu/packages/bioconductor.scm (r-cytoml): New variable.
2019-12-15 15:38:52 +01:00
6aedc80514
gnu: Add r-opencyto.
...
* gnu/packages/bioconductor.scm (r-opencyto): New variable.
2019-12-15 15:38:52 +01:00
b700b9ec21
gnu: Add r-flowstats.
...
* gnu/packages/bioconductor.scm (r-flowstats): New variable.
2019-12-15 15:38:52 +01:00
82c1111745
gnu: Add r-flowworkspace.
...
* gnu/packages/bioconductor.scm (r-flowworkspace): New variable.
2019-12-15 15:38:52 +01:00
f1964519e7
gnu: Add r-rprotobuflib.
...
* gnu/packages/bioconductor.scm (r-rprotobuflib): New variable.
2019-12-15 15:38:52 +01:00
c8ab9eb1b4
gnu: Add r-flowclust.
...
* gnu/packages/bioconductor.scm (r-flowclust): New variable.
2019-12-15 15:38:52 +01:00
0dd4b7d732
gnu: Add r-flowviz.
...
* gnu/packages/bioconductor.scm (r-flowviz): New variable.
2019-12-15 15:38:52 +01:00
f5f440312d
gnu: Add r-ggcyto.
...
* gnu/packages/bioconductor.scm (r-ggcyto): New variable.
2019-12-15 15:38:51 +01:00
15ac0c195c
gnu: Add r-ncdfflow.
...
* gnu/packages/bioconductor.scm (r-ncdfflow): New variable.
2019-12-15 15:38:51 +01:00
b4aee31dcb
gnu: Add r-cytolib.
...
* gnu/packages/bioconductor.scm (r-cytolib): New variable.
2019-12-15 15:38:51 +01:00
b4a22ccaaa
gnu: Add r-multidataset.
...
* gnu/packages/bioconductor.scm (r-multidataset): New variable.
2019-12-15 15:38:51 +01:00
e5d722fb4c
gnu: Add r-biocversion.
...
* gnu/packages/bioconductor.scm (r-biocversion): New variable.
2019-12-15 15:38:51 +01:00
8e6f63dd83
gnu: Add r-activepathways.
...
* gnu/packages/bioconductor.scm (r-activepathways): New variable.
2019-12-14 13:35:53 +01:00
72b67e0b36
gnu: Add r-activedriverwgs.
...
* gnu/packages/bioconductor.scm (r-activedriverwgs): New variable.
2019-12-13 22:41:38 +01:00
bf770d9240
gnu: r-metap: Update to 1.2.
...
* gnu/packages/cran.scm (r-metap): Move this from here...
* gnu/packages/bioconductor.scm (r-metap): ...to here and update to 1.2.
[propagated-inputs]: Add r-mutoss and r-tfisher.
2019-12-09 18:11:20 +01:00
f21147625f
gnu: Add r-mutoss.
...
* gnu/packages/bioconductor.scm (r-mutoss): New variable.
2019-12-09 18:11:19 +01:00
41728d234b
gnu: r-all: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-all)[source]: Use bioconductor-uri.
2019-12-04 09:36:34 +01:00
545e67ac03
gnu: r-hsmmsinglecell: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-hsmmsinglecell)[source]: Use
bioconductor-uri.
2019-12-04 09:36:15 +01:00
b86f77469b
gnu: r-arrmdata: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-arrmdata)[source]: Use bioconductor-uri.
2019-12-04 09:35:59 +01:00
ced61edf5d
gnu: r-abadata: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-abadata)[source]: Use bioconductor-uri.
2019-12-04 09:35:44 +01:00
eed2766a45
gnu: r-do-db: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-do-db)[source]: Use bioconductor-uri.
2019-12-04 09:35:26 +01:00
25f567a85a
gnu: r-illuminahumanmethylationepicmanifest: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-illuminahumanmethylationepicmanifest)[source]:
Use bioconductor-uri.
2019-12-04 09:35:08 +01:00
6aca4054e0
gnu: r-fdb-infiniummethylation-hg19: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19)[source]: Use
bioconductor-uri.
2019-12-04 09:34:47 +01:00
c271d99025
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:34:13 +01:00
1afdf41b49
gnu: r-txdb-mmusculus-ucsc-mm9-knowngene: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene)[source]:
Use bioconductor-uri.
2019-12-04 09:33:54 +01:00
d78db08862
gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene)[source]:
Use bioconductor-uri.
2019-12-04 09:33:35 +01:00
f2580a1385
gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:33:09 +01:00
717d7cda9d
gnu: r-genelendatabase: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-genelendatabase)[source]: Use
bioconductor-uri.
2019-12-04 09:32:48 +01:00
e7a8cf2e6e
gnu: r-bsgenome-hsapiens-ucsc-hg19: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:32:22 +01:00
411be88bf3
gnu: r-org-mm-eg-db: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-org-mm-eg-db)[source]: Use
bioconductor-uri.
2019-12-04 09:32:03 +01:00
f53becc6d8
gnu: r-org-hs-eg-db: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-org-hs-eg-db)[source]: Use
bioconductor-uri.
2019-12-04 09:31:46 +01:00
7bb65a2227
gnu: r-org-dr-eg-db: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-org-dr-eg-db)[source]: Use
bioconductor-uri.
2019-12-04 09:31:19 +01:00
b0dfc79b0d
gnu: r-org-dm-eg-db: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-org-dm-eg-db)[source]: Use
bioconductor-uri.
2019-12-04 09:30:58 +01:00
1c05e637a4
gnu: r-org-ce-eg-db: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-org-ce-eg-db)[source]: Use
bioconductor-uri.
2019-12-04 09:30:35 +01:00
f83404bc5b
gnu: r-bsgenome-mmusculus-ucsc-mm10: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:29:56 +01:00
51dc4a2d70
gnu: r-bsgenome-mmusculus-ucsc-mm9-masked: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked)[source]:
Use bioconductor-uri.
2019-12-04 09:29:26 +01:00
21f6dae73d
gnu: r-bsgenome-mmusculus-ucsc-mm9: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:28:54 +01:00
a47646bd05
gnu: r-bsgenome-hsapiens-ucsc-hg19-masked: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked)[source]:
Use bioconductor-uri.
2019-12-04 09:28:34 +01:00
88e7c7db59
gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-1000genomes-hs37d5)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:28:04 +01:00
bf05ece1a2
gnu: r-bsgenome-dmelanogaster-ucsc-dm3-masked: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3-masked)[source]:
Use bioconductor-uri.
2019-12-04 09:27:15 +01:00
87073b7ecb
gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:26:22 +01:00
149f351f38
gnu: r-bsgenome-dmelanogaster-ucsc-dm6: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm6)[source]:
Use bioconductor-uri.
[arguments]: Permit substitution.
2019-12-04 09:25:10 +01:00
6998ecba74
gnu: r-bsgenome-celegans-ucsc-ce10: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10)[source]: Use
bioconductor-uri.
[arguments]: Permit substitution.
2019-12-04 09:24:09 +01:00
b5b0ee3bd0
gnu: r-unifiedwmwqpcr: Fix typo in description.
...
* gnu/packages/bioconductor (r-unifiedwmwqpcr)[description]: Fix typo.
2019-11-11 19:02:45 -08:00
ca2b1dcfcd
gnu: r-xcms: Update to 3.6.2.
...
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.6.2.
2019-10-21 18:23:07 +02:00
b9f39ac986
gnu: r-mlinterfaces: Update to 1.64.1.
...
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.64.1.
2019-10-18 20:35:26 +02:00
86fb2c63be
gnu: Add r-unifiedwmwqpcr.
...
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-10-15 14:10:27 +02:00
16e2e4f27b
gnu: Add r-htqpcr.
...
* gnu/packages/bioconductor.scm (r-htqpcr): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-10-15 14:10:21 +02:00
40be965e28
gnu: Add r-phastcons100way-ucsc-hg19.
...
* gnu/packages/bioconductor.scm (r-phastcons100way-ucsc-hg19): New variable.
2019-10-14 18:09:37 +02:00
326746e14c
gnu: r-variancepartition: Update to 1.14.1.
...
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.14.1.
[propagated-inputs]: Add r-biocparallel.
2019-10-06 23:08:47 +02:00
eb796f53ef
gnu: r-mixomics: Update to 6.8.5.
...
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.5.
2019-10-06 23:08:47 +02:00
1c2e573302
gnu: r-regioner: Update to 1.16.5.
...
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.5.
2019-10-06 23:08:47 +02:00
d80a15696b
gnu: Add r-variancepartition.
...
* gnu/packages/bioconductor.scm (r-variancepartition): New variable.
2019-09-15 22:57:47 +02:00
2a360cf6ac
gnu: Add r-wavetiling.
...
* gnu/packages/bioconductor.scm (r-wavetiling): New variable.
2019-09-15 22:54:21 +02:00
f5349b4d5a
gnu: Add r-genomegraphs.
...
* gnu/packages/bioconductor.scm (r-genomegraphs): New variable.
2019-09-15 22:51:52 +02:00
4c63eeb8a4
gnu: Add r-oligo.
...
* gnu/packages/bioconductor.scm (r-oligo): New variable.
2019-09-15 22:50:31 +02:00
d6a5d9b24f
gnu: Add r-affxparser.
...
* gnu/packages/bioconductor.scm (r-affxparser): New variable.
2019-09-15 22:50:25 +02:00
df8576e5c9
gnu: Add r-variantfiltering.
...
* gnu/packages/bioconductor.scm (r-variantfiltering): New variable.
2019-09-15 22:41:03 +02:00
bb0024dc69
gnu: Add r-reqon.
...
* gnu/packages/bioconductor.scm (r-reqon): New variable.
2019-09-15 21:07:57 +02:00
e5dfcd8e26
gnu: Add r-seqbias.
...
* gnu/packages/bioconductor.scm (r-seqbias): New variable.
2019-09-15 21:07:56 +02:00
12105c6c3a
gnu: Add r-affycoretools.
...
* gnu/packages/bioconductor.scm (r-affycoretools): New variable.
2019-09-15 20:58:26 +02:00
01c7ba9982
gnu: Add r-oligoclasses.
...
* gnu/packages/bioconductor.scm (r-oligoclasses): New variable.
2019-09-15 20:58:26 +02:00
15184fb386
gnu: Add r-reportingtools.
...
* gnu/packages/bioconductor.scm (r-reportingtools): New variable.
2019-09-15 20:58:25 +02:00
83b4209122
gnu: Add r-pfam-db.
...
* gnu/packages/bioconductor.scm (r-pfam-db): New variable.
2019-09-15 20:57:26 +02:00
4ca2d6c1a6
gnu: Add r-affycontam.
...
* gnu/packages/bioconductor.scm (r-affycontam): New variable.
2019-09-15 20:53:27 +02:00
5094aa9472
gnu: Add r-affycompatible.
...
* gnu/packages/bioconductor.scm (r-affycompatible): New variable.
2019-09-15 20:53:21 +02:00
5cf940de21
gnu: Add r-affycomp.
...
* gnu/packages/bioconductor.scm (r-affycomp): New variable.
2019-09-15 20:53:14 +02:00
53b1e10f23
gnu: Add r-affydata.
...
* gnu/packages/bioconductor.scm (r-affydata): New variable.
2019-09-15 20:53:01 +02:00
853211a51b
gnu: Add r-timeseriesexperiment.
...
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): New variable.
2019-09-15 20:42:41 +02:00
739b2d10f0
gnu: Add r-wavcluster.
...
* gnu/packages/bioconductor.scm (r-wavcluster): New variable.
2019-09-15 20:41:01 +02:00
Ricardo Wurmus
Tobias Geerinckx-Rice
Mădălin Ionel Patrașcu
Roel Janssen
Vagrant Cascadian
zimoun