Leo Famulari
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8ec0ca8faf
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Revert some commits that caused guix pull to fail.
This reverts commits 821e643921 through
8f9fd9b70c.
Specifically, these commits caused the build failure of
guix-package-cache.drv like this:
------
(repl-version 0 1 1)
Generating package cache for '/gnu/store/vyz7q26kxxd4z70m24rkkqqhaizdla7g-profile'...
(exception unbound-variable (value #f) (value "Unbound variable: ~S") (value (r-biobase)) (value #f))
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2021-03-15 19:52:34 -04:00 |
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Ricardo Wurmus
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8f9fd9b70c
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gnu: r-biocparallel: Build reproducibly.
* gnu/packages/bioconductor.scm (r-biocparallel)[arguments]: Add phase
"make-reproducible".
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2021-03-15 23:31:58 +01:00 |
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zimoun
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d99a18252c
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gnu: r-delayedarray: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-delayedarray): Move from here...
* gnu/packages/bioconductor.scm (r-delayedarray): ...to here.
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2021-03-15 23:30:26 +01:00 |
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zimoun
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adf45daae9
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gnu: r-rsamtools: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-rsamtools): Move from here...
* gnu/packages/bioconductor.scm (r-rsamtools): ...to here.
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2021-03-15 23:30:26 +01:00 |
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zimoun
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b1a19ab6e2
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gnu: r-biostrings: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-biostrings): Move from here...
* gnu/packages/bioconductor.scm (r-biostrings): ...to here.
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2021-03-15 23:30:26 +01:00 |
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zimoun
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eab9807fb3
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gnu: r-biocparallel: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-biocparallel): Move from here...
* gnu/packages/bioconductor.scm (r-biocparallel): ...to here.
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2021-03-15 23:30:26 +01:00 |
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zimoun
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c11b541fba
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gnu: r-biomart: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-biomart): Move from here...
* gnu/packages/bioconductor.scm (r-biomart): ...to here.
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2021-03-15 23:30:26 +01:00 |
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zimoun
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16c7e79ebb
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gnu: r-annotationdbi: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-annotationdbi): Move from here...
* gnu/packages/bioconductor.scm (r-annotationdbi): ...to here.
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2021-03-15 23:30:26 +01:00 |
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zimoun
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457de7f401
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gnu: r-biobase: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-biobase): Move from here...
* gnu/packages/bioconductor.scm (r-biobase): ...to here.
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2021-03-15 23:30:26 +01:00 |
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zimoun
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f3f09b99cd
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gnu: r-genomicranges: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-genomicranges): Move from here...
* gnu/packages/bioconductor.scm (r-genomicranges): ...to here.
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2021-03-15 23:30:26 +01:00 |
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zimoun
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e56b3db82e
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gnu: r-xvector: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-xvector): Move from here...
* gnu/packages/bioconductor.scm (r-xvector): ...to here.
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2021-03-15 23:30:26 +01:00 |
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zimoun
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821e643921
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gnu: r-limma: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-limma): Move from here...
* gnu/packages/bioconductor.scm (r-limma): ...to here.
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2021-03-15 23:30:26 +01:00 |
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Ricardo Wurmus
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1ada8ea96c
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gnu: r-scater: Update to 1.18.6.
* gnu/packages/bioconductor.scm (r-scater): Update to 1.18.6.
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2021-03-15 15:03:08 +01:00 |
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Ricardo Wurmus
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fa6bb614c8
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gnu: r-cytoml: Update to 2.2.2.
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.2.2.
[inputs]: Add zlib.
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2021-03-15 15:03:08 +01:00 |
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Ricardo Wurmus
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11dc49afc2
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gnu: r-diffbind: Update to 3.0.14.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.14.
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2021-03-15 15:03:07 +01:00 |
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Ricardo Wurmus
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ee61edb621
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gnu: r-reportingtools: Update to 2.30.2.
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.30.2.
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2021-03-15 15:03:07 +01:00 |
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Ricardo Wurmus
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fa227c9640
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gnu: r-genomeinfodb: Update to 1.26.4.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.26.4.
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2021-03-15 15:03:07 +01:00 |
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Ricardo Wurmus
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b45c625f10
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gnu: r-deseq2: Update to 1.30.1.
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.30.1.
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2021-03-15 15:03:07 +01:00 |
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zimoun
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bf612ead76
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gnu: r-variantannotation: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-variantannotation): Move from here...
* gnu/packages/bioconductor.scm (r-variantannotation): ...to here.
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2021-03-15 14:06:24 +01:00 |
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zimoun
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082f3c5433
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gnu: r-edger: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-edger): Move from here...
* gnu/packages/bioconductor.scm (r-edger): ...to here.
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2021-03-15 14:06:16 +01:00 |
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zimoun
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35b62c044e
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gnu: r-genomeinfodb: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Move from here...
* gnu/packages/bioconductor.scm (r-genomeinfodb): ...to here.
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2021-03-15 14:05:56 +01:00 |
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zimoun
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8d6d75ff39
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gnu: r-genomeinfodbdata: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Move from here...
* gnu/packages/bioconductor.scm (r-genomeinfodbdata): ...to here.
[source]: Use 'bioconductor-uri'.
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2021-03-15 14:05:47 +01:00 |
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zimoun
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9949f459bf
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gnu: r-iranges: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-iranges): Move from here...
* gnu/packages/bioconductor.scm (r-iranges): ...to here.
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2021-03-15 14:05:37 +01:00 |
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zimoun
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d64e3a487b
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gnu: r-s4vectors: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-s4vectors): Move from here...
* gnu/packages/bioconductor.scm (r-s4vectors): ...to here.
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2021-03-15 14:05:27 +01:00 |
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zimoun
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852fa82d4c
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gnu: r-bioccheck: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bioccheck): Move from here...
* gnu/packages/bioconductor.scm (r-bioccheck): ...to here.
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2021-03-15 14:05:22 +01:00 |
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zimoun
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d5576b6eb7
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gnu: r-grohmm: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-grohmm): Move from here...
* gnu/packages/bioconductor.scm (r-grohmm): ...to here.
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2021-03-15 14:04:26 +01:00 |
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zimoun
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5ac55aea8b
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gnu: r-biocstyle: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-biocstyle): Move from here...
* gnu/packages/bioconductor.scm (r-biocstyle): ...to here.
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2021-03-15 14:03:21 +01:00 |
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zimoun
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134404b437
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gnu: r-biocviews: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-biocviews): Move from here...
* gnu/packages/bioconductor.scm (r-biocviews): ...to here.
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2021-03-15 14:03:18 +01:00 |
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Ricardo Wurmus
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3eeb7dbf04
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gnu: r-gkmsvm: Move back to (gnu packages cran).
* gnu/packages/bioconductor.scm (r-gkmsvm): Move this variable from here...
* gnu/packages/cran.scm (r-gkmsvm): ...to here.
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2021-03-15 12:15:18 +01:00 |
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zimoun
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df6b3c25bb
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gnu: r-systempiper: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-systempiper): Move from here...
* gnu/packages/bioconductor.scm (r-systempiper): ...to here.
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2021-03-12 14:45:55 +01:00 |
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zimoun
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8957efa8ef
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gnu: r-shortread: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-shortread): Move from here...
* gnu/packages/bioconductor.scm (r-shortread): ...to here.
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2021-03-12 14:45:54 +01:00 |
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zimoun
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2a97057688
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gnu: r-gostats: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-gostats): Move from here...
* gnu/packages/bioconductor.scm (r-gostats): ...to here.
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2021-03-12 14:45:54 +01:00 |
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zimoun
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4e7cf96c9f
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gnu: r-category: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-category): Move from here...
* gnu/packages/bioconductor.scm (r-category): ...to here.
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2021-03-12 14:45:54 +01:00 |
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zimoun
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031fdda47a
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gnu: r-gseabase: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-gseabase): Move from here...
* gnu/packages/bioconductor.scm (r-gseabase): ...to here.
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2021-03-12 14:45:54 +01:00 |
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zimoun
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f44079bc21
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gnu: r-rbgl: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-rbgl): Move from here...
* gnu/packages/bioconductor.scm (r-rbgl): ...to here.
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2021-03-12 14:45:54 +01:00 |
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zimoun
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ff92c2873c
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gnu: r-annotationforge: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-annotationforge): Move from here...
* gnu/packages/bioconductor.scm (r-annotationforge): ...to here.
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2021-03-12 14:45:53 +01:00 |
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zimoun
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d769b10714
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gnu: r-dexseq: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-dexseq): Move from here...
* gnu/packages/bioconductor.scm (r-dexseq): ...to here.
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2021-03-12 14:45:53 +01:00 |
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zimoun
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373545855d
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gnu: r-deseq2: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-deseq2): Move from here...
* gnu/packages/bioconductor.scm (r-deseq2): ...to here.
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2021-03-12 14:45:53 +01:00 |
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zimoun
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a35ea5fed9
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gnu: r-genefilter: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-genefilter): Move from here...
* gnu/packages/bioconductor.scm (r-genefilter): ...to here.
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2021-03-12 14:45:53 +01:00 |
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Ricardo Wurmus
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323aec6ad9
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gnu: r-bioassayr: Update home page.
* gnu/packages/bioconductor.scm (r-bioassayr)[home-page]: Follow permanent
redirect.
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2021-03-12 14:41:15 +01:00 |
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zimoun
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2528cad451
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gnu: r-bioassayr: Update to 1.28.2.
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.2.
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2021-03-12 14:41:14 +01:00 |
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zimoun
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8c8d365ca3
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gnu: r-chemminer: Update to 3.42.2.
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.2.
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2021-03-12 14:41:14 +01:00 |
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zimoun
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4f617bfb8e
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gnu: r-circrnaprofiler: Update to 1.4.2.
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.4.2.
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2021-03-12 14:41:14 +01:00 |
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Ricardo Wurmus
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ef8e4f4172
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gnu: r-wgcna: Update to 1.70-3.
* gnu/packages/bioconductor.scm (r-wgcna): Update to 1.70-3.
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2021-03-09 22:05:24 +01:00 |
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Mădălin Ionel Patrașcu
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297531ef58
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gnu: Add r-circrnaprofiler.
* gnu/packages/bioconductor.scm (r-circrnaprofiler): New variable.
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2021-03-05 16:07:06 +01:00 |
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Mădălin Ionel Patrașcu
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1353e53605
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gnu: Add r-universalmotif.
* gnu/packages/bioconductor.scm (r-universalmotif): New variable.
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2021-03-05 16:07:06 +01:00 |
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Ricardo Wurmus
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89d7c8efc6
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gnu: Add r-chromvar.
* gnu/packages/bioconductor.scm (r-chromvar): New variable.
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2021-02-18 15:57:52 +01:00 |
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Ricardo Wurmus
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9a38f39ec0
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gnu: Add r-motifmatchr.
* gnu/packages/bioconductor.scm (r-motifmatchr): New variable.
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2021-02-18 15:40:44 +01:00 |
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Ricardo Wurmus
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2def2e203f
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gnu: Add r-tfbstools.
* gnu/packages/bioconductor.scm (r-tfbstools): New variable.
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2021-02-18 15:35:38 +01:00 |
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Ricardo Wurmus
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e6bc150b0c
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gnu: Add r-cner.
* gnu/packages/bioconductor.scm (r-cner): New variable.
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2021-02-18 15:19:46 +01:00 |
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