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Author SHA1 Message Date
Ricardo Wurmus f27b8dfc8b
gnu: r-ebimage: Update to 4.38.0. 
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.38.0.
 2022-05-28 23:19:27 +02:00
Ricardo Wurmus 5bd8b53432
gnu: r-aucell: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.18.1.
[propagated-inputs]: Remove r-s4vectors; add r-delayedarray and r-delayedmatrixstats.
 2022-05-28 23:19:27 +02:00
Ricardo Wurmus 00eda6acec
gnu: r-allelicimbalance: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.34.0.
 2022-05-28 23:19:26 +02:00
Ricardo Wurmus 4e95453274
gnu: r-annotationtools: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.70.0.
 2022-05-28 23:19:26 +02:00
Ricardo Wurmus d3ff3a75cd
gnu: r-gofuncr: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.16.0.
 2022-05-28 23:19:26 +02:00
Ricardo Wurmus 5fce56ab4b
gnu: r-atacseqqc: Update to 1.20.2. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.20.2.
 2022-05-28 23:19:26 +02:00
Ricardo Wurmus 8f957d34f1
gnu: r-genomicscores: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.8.0.
 2022-05-28 23:19:26 +02:00
Ricardo Wurmus 81880b4cb7
gnu: r-motifstack: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.40.0.
[propagated-inputs]: Add r-tfbstools.
 2022-05-28 23:19:26 +02:00
Ricardo Wurmus ef522a5828
gnu: r-motifbreakr: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.10.0.
[propagated-inputs]: Remove r-grimport.
 2022-05-28 23:19:26 +02:00
Ricardo Wurmus d124f0fe20
gnu: r-motifdb: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.38.0.
 2022-05-28 23:19:26 +02:00
Ricardo Wurmus bd510b8d74
gnu: r-rgadem: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.44.0.
 2022-05-28 23:19:26 +02:00
Ricardo Wurmus 9dba02ad15
gnu: r-bacon: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.24.0.
 2022-05-28 23:19:26 +02:00
Ricardo Wurmus 83b5c68b44
gnu: r-abseqr: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.14.0.
 2022-05-28 23:19:25 +02:00
Ricardo Wurmus 73ed8b2361
gnu: r-a4: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-a4): Update to 1.44.0.
 2022-05-28 23:19:25 +02:00
Ricardo Wurmus c5a596f8b3
gnu: r-a4base: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.44.0.
 2022-05-28 23:19:25 +02:00
Ricardo Wurmus 2fa91cea9c
gnu: r-a4reporting: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.44.0.
 2022-05-28 23:19:25 +02:00
Ricardo Wurmus 47241c78a0
gnu: r-a4preproc: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.44.0.
 2022-05-28 23:19:25 +02:00
Ricardo Wurmus 72a0c0fda2
gnu: r-a4classif: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.44.0.
 2022-05-28 23:19:25 +02:00
Ricardo Wurmus b80a4781ae
gnu: r-a4core: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.44.0.
 2022-05-28 23:19:25 +02:00
Ricardo Wurmus c75a555b5d
gnu: r-annaffy: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.68.0.
 2022-05-28 23:19:25 +02:00
Ricardo Wurmus 479dc1bd20
gnu: r-mlinterfaces: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.76.0.
 2022-05-28 23:19:25 +02:00
Ricardo Wurmus a47875ef72
gnu: r-clusterexperiment: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.16.0.
 2022-05-28 23:19:24 +02:00
Ricardo Wurmus 54cd450ba8
gnu: r-clusterprofiler: Update to 4.4.1. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.1.
 2022-05-28 23:19:24 +02:00
Ricardo Wurmus 7dee98b9aa
gnu: r-enrichplot: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.16.1.
 2022-05-28 23:19:24 +02:00
Ricardo Wurmus 00c890fa47
gnu: r-dose: Update to 3.22.0. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.22.0.
 2022-05-28 23:19:24 +02:00
Ricardo Wurmus cf8935a130
gnu: r-fgsea: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.22.0.
 2022-05-28 23:19:24 +02:00
Ricardo Wurmus 8b9d7ec808
gnu: r-fcscan: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.10.0.
 2022-05-28 23:19:24 +02:00
Ricardo Wurmus 9c44834a76
gnu: r-sigpathway: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.64.0.
 2022-05-28 23:19:24 +02:00
Ricardo Wurmus dde65de5d3
gnu: r-anota: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-anota): Update to 1.44.0.
 2022-05-28 23:19:24 +02:00
Ricardo Wurmus 50bad20ace
gnu: r-gosemsim: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.22.0.
 2022-05-28 23:19:24 +02:00
Ricardo Wurmus c2c1311881
gnu: r-heatplus: Update to 3.4.0. 
* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.4.0.
 2022-05-28 23:19:24 +02:00
Ricardo Wurmus a88487870b
gnu: r-varianttools: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.38.0.
 2022-05-28 23:19:24 +02:00
Ricardo Wurmus 0ff26b744a
gnu: r-tradeseq: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.10.0.
 2022-05-28 23:19:24 +02:00
Ricardo Wurmus 82ce69aeda
gnu: r-ioniser: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.20.0.
 2022-05-28 23:19:23 +02:00
Ricardo Wurmus 176a6ccb73
gnu: r-linnorm: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.20.0.
 2022-05-28 23:19:23 +02:00
Ricardo Wurmus 9ccc0373b1
gnu: r-lumi: Update to 2.48.0. 
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.48.0.
 2022-05-28 23:19:23 +02:00
Ricardo Wurmus a02d652e44
gnu: r-methylumi: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.42.0.
 2022-05-28 23:19:23 +02:00
Ricardo Wurmus f36df22ceb
gnu: r-minfi: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.42.0.
 2022-05-28 23:19:23 +02:00
Ricardo Wurmus 2246d7a2d9
gnu: r-bumphunter: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.38.0.
 2022-05-28 23:19:23 +02:00
Ricardo Wurmus 4ff4b93aa0
gnu: r-siggenes: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.70.0.
 2022-05-28 23:19:23 +02:00
Ricardo Wurmus 125c06af91
gnu: r-illuminaio: Update to 0.38.0. 
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.38.0.
 2022-05-28 23:19:23 +02:00
Ricardo Wurmus 6303dcbc85
gnu: r-geoquery: Update to 2.64.2. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.64.2.
[propagated-inputs]: Remove r-httr; add r-curl.
 2022-05-28 23:19:23 +02:00
Ricardo Wurmus 52b158dca5
gnu: r-scone: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.20.0.
 2022-05-28 23:19:23 +02:00
Ricardo Wurmus 4221d4588b
gnu: r-scdd: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.20.0.
 2022-05-28 23:19:22 +02:00
Ricardo Wurmus 579e05dd9a
gnu: r-noiseq: Update to 2.40.0. 
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.40.0.
 2022-05-28 23:19:22 +02:00
Ricardo Wurmus 84d78abd52
gnu: r-monocle: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.24.0.
[propagated-inputs]: Remove r-densityclust; add r-leidenbase.
 2022-05-28 23:19:22 +02:00
Ricardo Wurmus 2fb6818ab8
gnu: r-mast: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-mast): Update to 1.22.0.
 2022-05-28 23:19:22 +02:00
Ricardo Wurmus 70f5a74778
gnu: r-residualmatrix: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.6.0.
 2022-05-28 23:19:22 +02:00
Ricardo Wurmus 76ec28f63b
gnu: r-icobra: Update to 1.24.1. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.24.1.
[propagated-inputs]: Add r-markdown.
 2022-05-28 23:19:22 +02:00
Ricardo Wurmus 00da479a7b
gnu: r-ihw: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.24.0.
 2022-05-28 23:19:22 +02:00
Ricardo Wurmus 5a23854532
gnu: r-lpsymphony: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.24.0.
 2022-05-28 23:19:22 +02:00
Ricardo Wurmus 266df31f5d
gnu: r-karyoploter: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.22.0.
 2022-05-28 23:19:21 +02:00
Ricardo Wurmus 3de4ed3fc6
gnu: r-ebseq: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.36.0.
 2022-05-28 23:19:21 +02:00
Ricardo Wurmus 9af002ee18
gnu: r-dnacopy: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.70.0.
 2022-05-28 23:19:21 +02:00
Ricardo Wurmus db8cb101d6
gnu: r-copynumber: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.36.0.
 2022-05-28 23:19:21 +02:00
Ricardo Wurmus f8bab3c5e7
gnu: r-chipexoqual: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.20.0.
 2022-05-28 23:19:21 +02:00
Ricardo Wurmus 9641d32660
gnu: r-savr: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-savr): Update to 1.34.0.
 2022-05-28 23:19:21 +02:00
Ricardo Wurmus 0258381d43
gnu: r-destiny: Update to 3.10.0. 
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.10.0.
 2022-05-28 23:19:21 +02:00
Ricardo Wurmus 5aad467251
gnu: r-biocsingular: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.12.0.
 2022-05-28 23:19:21 +02:00
Ricardo Wurmus a2cc02fea8
gnu: r-metapod: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.4.0.
 2022-05-28 23:19:21 +02:00
Ricardo Wurmus e2ec50a938
gnu: r-ggtree: Update to 3.4.0. 
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.4.0.
 2022-05-28 23:19:20 +02:00
Ricardo Wurmus 21715b19d3
gnu: r-treeio: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.20.0.
 2022-05-28 23:19:20 +02:00
Ricardo Wurmus 8026665191
gnu: r-scaledmatrix: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.4.0.
 2022-05-28 23:19:20 +02:00
Ricardo Wurmus ccee3dcc6b
gnu: r-biocneighbors: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.14.0.
 2022-05-28 23:19:20 +02:00
Ricardo Wurmus 0190978dcf
gnu: r-ruvseq: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.30.0.
 2022-05-28 23:19:20 +02:00
Ricardo Wurmus 8b475c3e92
gnu: r-dnabarcodes: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.26.0.
 2022-05-28 23:19:20 +02:00
Ricardo Wurmus d6c3acb1c2
gnu: r-inspect: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.26.0.
 2022-05-28 23:19:20 +02:00
Ricardo Wurmus 86dd93110e
gnu: r-plgem: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.68.0.
 2022-05-28 23:19:20 +02:00
Ricardo Wurmus a028875b63
gnu: r-rots: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.24.0.
 2022-05-28 23:19:20 +02:00
Ricardo Wurmus 09d4735055
gnu: r-glimma: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.6.0.
 2022-05-28 23:19:19 +02:00
Ricardo Wurmus 53b152b2cf
gnu: r-goseq: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.48.0.
 2022-05-28 23:19:19 +02:00
Ricardo Wurmus 6d9a73c847
gnu: r-ctc: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.70.0.
 2022-05-28 23:19:19 +02:00
Ricardo Wurmus 120329918b
gnu: r-genomicinteractions: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.30.0.
 2022-05-28 23:19:19 +02:00
Ricardo Wurmus 6695c4e33b
gnu: r-interactionset: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.24.0.
 2022-05-28 23:19:19 +02:00
Ricardo Wurmus 292efe0ae2
gnu: r-riboseqr: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.30.0.
 2022-05-28 23:19:19 +02:00
Ricardo Wurmus 2a8444ca5c
gnu: r-riboprofiling: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.26.0.
 2022-05-28 23:19:19 +02:00
Ricardo Wurmus d47ffaf7ee
gnu: r-chipcomp: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.26.0.
 2022-05-28 23:19:19 +02:00
Ricardo Wurmus d6559d1e1b
gnu: r-bayseq: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.30.0.
 2022-05-28 23:19:19 +02:00
Ricardo Wurmus ecd2d01d1e
gnu: r-qdnaseq: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.32.0.
 2022-05-28 23:19:18 +02:00
Ricardo Wurmus 3dd1b0508d
gnu: r-cghcall: Update to 2.58.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.58.0.
 2022-05-28 23:19:18 +02:00
Ricardo Wurmus 7188427b5c
gnu: r-cghbase: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.56.0.
 2022-05-28 23:19:18 +02:00
Ricardo Wurmus a7c3f7f2b1
gnu: r-marray: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.74.0.
 2022-05-28 23:19:18 +02:00
Ricardo Wurmus a1da6d7d45
gnu: r-matrixgenerics: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.8.0.
 2022-05-28 23:19:18 +02:00
Ricardo Wurmus ef5c266f23
gnu: r-chippeakanno: Update to 3.30.0. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.30.0.
 2022-05-28 23:19:18 +02:00
Ricardo Wurmus d825e79fc8
gnu: r-graph: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.74.0.
 2022-05-28 23:19:18 +02:00
Ricardo Wurmus de49b64b69
gnu: r-multtest: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.52.0.
 2022-05-28 23:19:18 +02:00
Ricardo Wurmus f6c6605102
gnu: r-mbkmeans: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.12.0.
 2022-05-28 23:19:18 +02:00
Ricardo Wurmus 7bc3e13bf5
gnu: r-diffbind: Update to 3.6.1. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.6.1.
 2022-05-28 23:19:18 +02:00
Ricardo Wurmus 84fc29bad6
gnu: r-greylistchip: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.28.1.
 2022-05-28 23:19:17 +02:00
Ricardo Wurmus 21db7a48e0
gnu: r-apeglm: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.18.0.
 2022-05-28 23:19:17 +02:00
Ricardo Wurmus ec76f7ca9b
gnu: r-qvalue: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.28.0.
 2022-05-28 23:19:17 +02:00
Ricardo Wurmus 8a2e344cf7
gnu: r-oligo: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.60.0.
 2022-05-28 23:19:17 +02:00
Ricardo Wurmus 4ee5d02e70
gnu: r-oligoclasses: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.58.0.
 2022-05-28 23:19:17 +02:00
Ricardo Wurmus 4268f796c8
gnu: r-geneplotter: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.74.0.
 2022-05-28 23:19:17 +02:00
Ricardo Wurmus 2b652812e8
gnu: r-zellkonverter: Update to 1.6.1. 
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.1.
 2022-05-28 23:19:17 +02:00
Ricardo Wurmus 2bc32aa065
gnu: r-zlibbioc: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.42.0.
 2022-05-28 23:19:17 +02:00
Ricardo Wurmus 2b36da1784
gnu: r-xvector: Update to 0.36.0. 
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.36.0.
 2022-05-28 23:19:17 +02:00
Ricardo Wurmus 036dcaed7d
gnu: r-xmapbridge: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-xmapbridge): Update to 1.54.0.
 2022-05-28 23:19:17 +02:00
Ricardo Wurmus e7a0b14115
gnu: r-xina: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-xina): Update to 1.14.0.
 2022-05-28 23:19:16 +02:00
Ricardo Wurmus be389d989d
gnu: r-vsn: Update to 3.64.0. 
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.64.0.
 2022-05-28 23:19:16 +02:00
Ricardo Wurmus a9d0efc639
gnu: r-variantannotation: Update to 1.42.1. 
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.42.1.
 2022-05-28 23:19:16 +02:00
Ricardo Wurmus 131135458e
gnu: r-tximport: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.24.0.
 2022-05-28 23:19:16 +02:00
Ricardo Wurmus 47cdb42840
gnu: r-topgo: Update to 2.48.0. 
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.48.0.
 2022-05-28 23:19:16 +02:00
Ricardo Wurmus de403d02ad
gnu: r-systempiper: Update to 2.2.2. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.2.2.
 2022-05-28 23:19:16 +02:00
Ricardo Wurmus 02c26f40b7
gnu: r-sva: Update to 3.44.0. 
* gnu/packages/bioconductor.scm (r-sva): Update to 3.44.0.
 2022-05-28 23:19:16 +02:00
Ricardo Wurmus a0734f8bdd
gnu: r-summarizedexperiment: Update to 1.26.1. 
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.26.1.
 2022-05-28 23:19:16 +02:00
Ricardo Wurmus 8037227617
gnu: r-structuralvariantannotation: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.12.0.
 2022-05-28 23:19:16 +02:00
Ricardo Wurmus d044d62102
gnu: r-stringdb: Update to 2.8.4. 
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.8.4.
 2022-05-28 23:19:16 +02:00
Ricardo Wurmus ed19cbbf15
gnu: r-stager: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-stager): Update to 1.18.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus 8d1ab3f57d
gnu: r-slingshot: Update to 2.4.0. 
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.4.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus 3f873a27e0
gnu: r-trajectoryutils: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.4.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus 909d580b9a
gnu: r-transcriptr: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-transcriptr): Update to 1.24.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus 9b935eaa56
gnu: r-simplifyenrichment: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.6.0.
[propagated-inputs]: Add r-colorspace and r-globaloptions.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus 6d2b2e0ad9
gnu: r-shortread: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.54.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus 27588f020d
gnu: r-seqpattern: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.28.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus 5346b424cc
gnu: r-seqlogo: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.62.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus a260fc5a90
gnu: r-scdblfinder: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.10.0.
[propagated-inputs]: Add r-genomeinfodb, r-genomicranges, r-iranges, r-rsamtools, and
r-rtracklayer.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus 021ab21b57
gnu: r-scannotatr: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-scannotatr): Update to 1.2.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus ea283a3cda
gnu: r-rtracklayer: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.56.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 990ee0c7cc
gnu: r-rsamtools: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.12.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus a8c63ab610
gnu: r-rhdf5filters: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.8.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 3c31e7e249
gnu: r-rhdf5: Update to 2.40.0. 
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.40.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus de8b8c86e6
gnu: r-reportingtools: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.36.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 21669d75f6
gnu: r-regioner: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.28.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 9d05a948ea
gnu: r-rcas: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.22.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 1a873db6b2
gnu: r-rbgl: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.72.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 2b7c604ebf
gnu: r-protgenerics: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.28.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus d4201b5f61
gnu: r-pcamethods: Update to 1.88.0. 
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.88.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus e3878bc3c0
gnu: r-organismdbi: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.38.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus d1134b61fd
gnu: r-mzr: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.30.0.
[propagated-inputs]: Remove r-zlibbioc.
[inputs]: Replace boost-for-mysql with boost.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus 3eb763c2ba
gnu: r-mzid: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.34.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus d6fe1e2d12
gnu: r-msnid: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.30.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus d6f683b561
gnu: r-msnbase: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.22.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus 8ec1ca001d
gnu: r-mutationalpatterns: Update to 3.6.0. 
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.6.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus 56741afedd
gnu: r-methylkit: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.22.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus 0cb9ffc4e3
gnu: r-limma: Update to 3.52.1. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.1.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus cb17da65a5
gnu: r-lfa: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-lfa): Update to 1.26.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus 2a3372953d
gnu: r-keggrest: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.36.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus a6cb10afc3
gnu: r-interactivedisplaybase: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.34.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus cd9b5f0029
gnu: r-impute: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-impute): Update to 1.70.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus bb2b2f6543
gnu: r-rhtslib: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 1.28.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus 3daf94f147
gnu: r-hpar: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.38.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus 3e1dbcb3bf
gnu: r-gseabase: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.58.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus 5c3a303d30
gnu: r-gostats: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.62.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus bf93ff28c5
gnu: r-genomicranges: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.48.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus d14aeab8b8
gnu: r-genomicfiles: Update to 1.32.1. 
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.32.1.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus fa516541c3
gnu: r-genomicfeatures: Update to 1.48.1. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.1.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus 1a04133411
gnu: r-genomicalignments: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.32.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus 4966e9e925
gnu: r-genomeinfodb: Update to 1.32.2. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.32.2.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus 09ae595016
gnu: r-genomation: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.28.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus b755e0d623
gnu: r-geneoverlap: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.32.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus cb6e76dc63
gnu: r-genefilter: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.78.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus 3fd4c8f29f
gnu: r-gage: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-gage): Update to 2.46.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus b604766021
gnu: r-fastseg: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.42.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus 89b669ba0e
gnu: r-ensembldb: Update to 2.20.1. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.20.1.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus 9d030069d4
gnu: r-edger: Update to 3.38.1. 
* gnu/packages/bioconductor.scm (r-edger): Update to 3.38.1.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus 1d19d45fe7
gnu: r-edaseq: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.30.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus 12a8b7bca3
gnu: r-dirichletmultinomial: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.38.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus 380384a209
gnu: r-diffcyt: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-diffcyt): Update to 1.16.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus ea0c72bed0
gnu: r-dexseq: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.42.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus a83d8ee1eb
gnu: r-deseq2: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.36.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus d29abfbd40
gnu: r-copywriter: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-copywriter): Update to 2.28.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus d15ab4ed30
gnu: r-complexheatmap: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.12.0.
[propagated-inputs]: Add r-codetools.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus d66077a5ad
gnu: r-chipseq: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.46.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus 5e9e69ccd8
gnu: r-chipseeker: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.32.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus b7f95b40a8
gnu: r-category: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-category): Update to 2.62.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus 417481b3b0
gnu: r-bsgenome: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.64.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus 6479274a0b
gnu: r-biovizbase: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.44.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus e56181a34e
gnu: r-biocparallel: Update to 1.30.2. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.30.2.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus 48ca8c8026
gnu: r-biomart: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.52.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus 70b29256f6
gnu: r-biobase: Update to 2.56.0. 
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.56.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus 4d9011c00b
gnu: r-bamsignals: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.28.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus 043b388f38
gnu: r-aroma-light: Update to 3.26.0. 
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.26.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus 0b2579cbe0
gnu: r-annotationhub: Update to 3.4.0. 
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.4.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus 282985f6c3
gnu: r-annotationforge: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.38.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus 3db3797305
gnu: r-annotationfilter: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.20.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus 0dcb2df4e1
gnu: r-annotationdbi: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.58.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus 2563aeb416
gnu: r-annotate: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.74.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus b928f25f51
gnu: r-affxparser: Update to 1.68.1. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.68.1.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus da1e879b9b
gnu: r-affyio: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.66.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus fb1fb2b8c2
gnu: r-affycoretools: Update to 1.68.1. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.68.1.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus d4af958ae8
gnu: r-affycontam: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.54.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus 83f8f3ae08
gnu: r-affycompatible: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.56.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus 45a6d9c0f4
gnu: r-affycomp: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.72.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus 429e687e69
gnu: r-affy: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-affy): Update to 1.74.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus a15c457c59
gnu: r-isoformswitchanalyzer: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 1.18.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus 285b5cb7fa
gnu: r-iranges: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.30.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus 48c3389314
gnu: r-ideoviz: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.32.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus 051b7e63f2
gnu: r-bluster: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.6.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus 59fff0e2d2
gnu: r-drimseq: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-drimseq): Update to 1.24.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus cea1b9029a
gnu: r-derfinderhelper: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.30.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus a2173119ec
gnu: r-delayedarray: Update to 0.22.0. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.22.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus d15f46c5cf
gnu: r-deepsnv: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.42.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus 7149e667c1
gnu: r-decipher: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.24.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus 25847e60fe
gnu: r-dearseq: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.8.1.
[propagated-inputs]: Add r-compquadform, r-dplyr, r-magrittr, r-reshape2, r-rlang,
r-tibble, and r-viridislite.
[native-inputs]: Add r-knitr.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus b0bd7ec471
gnu: r-cummerbund: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.38.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus 6f0430cdc2
gnu: r-coverageview: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.34.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus 00d51727e5
gnu: r-biocgenerics: Update to 0.42.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.42.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus b19400063e
gnu: r-biocversion: Update to 3.15.2. 
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.15.2.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus 75628fc7ce
gnu: r-aneufinder: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.24.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus 5f9a73d665
gnu: r-adductomicsr: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-adductomicsr): Update to 1.12.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus a5e1a37cdf
gnu: r-agilp: Update to 3.28.0. 
* gnu/packages/bioconductor.scm (r-agilp): Update to 3.28.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus e704ed78b5
gnu: r-aggregatebiovar: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-aggregatebiovar): Update to 1.6.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus 6e1d256151
gnu: r-agdex: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-agdex): Update to 1.44.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus 052d0d283a
gnu: r-affyrnadegradation: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-affyrnadegradation): Update to 1.42.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus f4a85d5555
gnu: r-affixcan: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-affixcan): Update to 1.14.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus 3e524e46a0
gnu: r-adsplit: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-adsplit): Update to 1.66.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus 3a29b78fa9
gnu: r-adimpute: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-adimpute): Update to 1.6.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus 1d3b5f80e7
gnu: r-adamgui: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-adamgui): Update to 1.12.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus 69dc67d9aa
gnu: r-adam: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-adam): Update to 1.12.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus 5911a8992b
gnu: r-absseq: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-absseq): Update to 1.50.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus 67d858b97c
gnu: r-abarray: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-abarray): Update to 1.64.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus 90d165ea86
gnu: r-biostrings: Update to 2.64.0. 
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.64.0.
[arguments]: Remove build phase 'patch-for-R-4.2.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus 413133e430
gnu: Add r-decoupler. 
* gnu/packages/bioconductor.scm (r-decoupler): New variable.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus d723619fc3
gnu: r-biostrings: Patch for R 4.2.0. 
* gnu/packages/bioconductor.scm (r-biostrings)[arguments]: Add build phase
'patch-for-R-4.2.0.
 2022-05-28 23:19:04 +02:00
Ricardo Wurmus 32a3b09c51
gnu: r-abn: Update to 2.7-1. 
* gnu/packages/bioconductor.scm (r-abn): Update to 2.7-1.
 2022-05-28 23:18:42 +02:00
Ricardo Wurmus 3360f14b08
gnu: r-ldheatmap: Update to 1.0-6. 
* gnu/packages/bioconductor.scm (r-ldheatmap): Update to 1.0-6.
 2022-05-28 23:18:42 +02:00
Ricardo Wurmus 3ceaa41e67
gnu: r-wgcna: Update to 1.71. 
* gnu/packages/bioconductor.scm (r-wgcna): Update to 1.71.
 2022-05-28 23:18:42 +02:00
Ricardo Wurmus ac12a57b78
gnu: r-activepathways: Update to 1.1.0. 
* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.1.0.
 2022-05-28 23:18:42 +02:00
zimoun caa51b5d10
gnu: Add r-pscbs. 
* gnu/packages/bioconductor.scm (r-pscbs): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-05-24 23:27:49 +02:00
Mădălin Ionel Patrașcu 7494f4b4ab
gnu: Add r-agimicrorna. 
* gnu/packages/bioconductor.scm (r-agimicrorna): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-05-02 15:23:50 +02:00
Mădălin Ionel Patrașcu 9c19db8c1d
gnu: Add r-adductomicsr. 
* gnu/packages/bioconductor.scm (r-adductomicsr): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-05-02 15:17:28 +02:00
Mădălin Ionel Patrașcu 290934c8fc
gnu: Add r-adductdata. 
* gnu/packages/bioconductor.scm (r-adductdata): New variable.
 2022-05-02 15:17:28 +02:00
Mădălin Ionel Patrașcu 31c9f0e301
gnu: Add r-agilp. 
* gnu/packages/bioconductor.scm (r-agilp): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-27 16:35:06 +02:00
Mădălin Ionel Patrașcu 37f584592a
gnu: Add r-aggregatebiovar. 
* gnu/packages/bioconductor.scm (r-aggregatebiovar): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-27 16:29:20 +02:00
Mădălin Ionel Patrașcu 73fe0dab50
gnu: Add r-agdex. 
* gnu/packages/bioconductor.scm (r-agdex): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-27 16:24:55 +02:00
Mădălin Ionel Patrașcu be2ead3073
gnu: Add r-affyrnadegradation. 
* gnu/packages/bioconductor.scm (r-affyrnadegradation): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-27 16:18:27 +02:00
Mădălin Ionel Patrașcu 851770312f
gnu: Add r-affixcan. 
* gnu/packages/bioconductor.scm (r-affixcan): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-27 16:07:58 +02:00
Mădălin Ionel Patrașcu 43dc50a5c7
gnu: Add r-adsplit. 
* gnu/packages/bioconductor.scm (r-adsplit): New variable.
 2022-04-27 16:03:22 +02:00
Mădălin Ionel Patrașcu a45dfa8a73
gnu: Add r-adimpute. 
* gnu/packages/bioconductor.scm (r-adimpute): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-27 15:50:53 +02:00
Mădălin Ionel Patrașcu 936f23a654
gnu: Add r-adamgui. 
* gnu/packages/bioconductor.scm (r-adamgui): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-26 23:47:54 +02:00
Ricardo Wurmus b79431b5e9
gnu: Add r-lfa. 
* gnu/packages/bioconductor.scm (r-lfa): New variable.
 2022-04-26 09:48:13 +02:00
Mădălin Ionel Patrașcu 2902adfc7e
gnu: Add r-adam. 
* gnu/packages/bioconductor.scm (r-adam): New variable.
 2022-04-26 09:48:13 +02:00
Mădălin Ionel Patrașcu b0dd06bd0c
gnu: Add r-xcir. 
* gnu/packages/bioconductor.scm (r-xcir): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 14:53:17 +02:00
Ricardo Wurmus 919cecd00b
gnu: r-illuminahumanmethylation450kanno-ilmn12-hg19: Move to annotation section. 
* gnu/packages/bioconductor.scm (r-illuminahumanmethylation450kanno-ilmn12-hg19):
Move this variable up to the annotation section.
 2022-04-14 13:38:30 +02:00
Ricardo Wurmus 03009f2a2b
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Move to annotation section. 
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): Move
this variable up to the annotation section.
 2022-04-14 13:37:23 +02:00
Ricardo Wurmus c8a6e4abbc
gnu: r-chromvarmotifs: Move to (gnu packages bioinformatics). 
* gnu/packages/bioconductor.scm (r-chromvarmotifs): Move this variable from here...
* gnu/packages/bioinformatics.scm (r-chromvarmotifs): ...to here.
 2022-04-14 13:35:22 +02:00
Ricardo Wurmus aafd0d2309
gnu: r-absseq: Move out of experiments section. 
* gnu/packages/bioconductor.scm (r-absseq): Move definition out of experiments
section.
 2022-04-14 13:34:11 +02:00
Ricardo Wurmus ed3697c040
gnu: r-abarray: Move out of experiments section. 
* gnu/packages/bioconductor.scm (r-abarray): Move definition out of
experiments section.
 2022-04-14 13:32:52 +02:00
Ricardo Wurmus 67941709e2
gnu: r-aneufinder: Move to packages section. 
* gnu/packages/bioconductor.scm (r-aneufinder): Move this definition out of
the section for Bioconductor experiments packages.
 2022-04-14 13:31:33 +02:00
Mădălin Ionel Patrașcu cab6657094
gnu: Add r-absseq. 
* gnu/packages/bioconductor.scm (r-absseq): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 13:29:48 +02:00
Mădălin Ionel Patrașcu a436582124
gnu: Add r-abarray. 
* gnu/packages/bioconductor.scm (r-abarray): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 13:20:07 +02:00
Mădălin Ionel Patrașcu 1b2b1c30e2
gnu: Add r-acde. 
* gnu/packages/bioconductor.scm (r-acde): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 13:18:07 +02:00
Mădălin Ionel Patrașcu dd9d26bce6
gnu: Add r-wppi. 
* gnu/packages/bioconductor.scm (r-wppi): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 12:47:24 +02:00
Mădălin Ionel Patrașcu 55be5fc400
gnu: Add r-acme. 
* gnu/packages/bioconductor.scm (r-acme): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 12:33:27 +02:00
Mădălin Ionel Patrașcu 08df30f232
gnu: Add r-acgh. 
* gnu/packages/bioconductor.scm (r-acgh): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 11:59:15 +02:00
Mădălin Ionel Patrașcu 839241501a
gnu: Add r-ace. 
* gnu/packages/bioconductor.scm (r-ace): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 11:50:34 +02:00
Mădălin Ionel Patrașcu 7d990e775e
gnu: r-catalyst: Update description. 
* gnu/packages/bioconductor.scm (r-catalyst)[description]: Add Texinfo markup
and clarify a sentence.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 11:43:24 +02:00
Ricardo Wurmus d85146c9df
gnu: r-tcgabiolinks: Update to 2.22.4. 
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.22.4.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus 5acc125305
gnu: r-omnipathr: Update to 3.2.8. 
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.2.8.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus 2def20d3ae
gnu: r-bgeedb: Update to 2.20.1. 
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.20.1.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus c7cb92e494
gnu: r-gviz: Update to 1.38.4. 
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.38.4.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus 3c7e190eea
gnu: r-catalyst: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.18.1.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus 3e07fbf32a
gnu: r-mscoreutils: Update to 1.6.2. 
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.6.2.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus 40735701a8
gnu: r-singler: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-singler): Update to 1.8.1.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus 2a71a7b961
gnu: r-s4vectors: Update to 0.32.4. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.4.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus 51ddaf48e8
gnu: r-experimenthub: Update to 2.2.1. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.2.1.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus c9e925d444
gnu: r-universalmotif: Update to 1.12.4. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.12.4.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus eadb1f53e9
gnu: r-variancepartition: Update to 1.24.1. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.24.1.
[propagated-inputs]: Add r-aod, r-rdpack, and r-rhpcblasctl.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus 9950ed71fc
gnu: r-cytolib: Update to 2.6.2. 
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.6.2.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus 0861d4fff5
gnu: r-rsubread: Update to 2.8.2. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.8.2.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus cb30400097
gnu: r-ropls: Update to 1.26.4. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.26.4.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus 0c478f50f2
gnu: r-birewire: Update to 3.26.5. 
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.26.5.
[propagated-inputs]: Remove r-tsne; add r-rtsne.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus b446be46ba
gnu: r-biocfilecache: Update to 2.2.1. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.2.1.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus 5576a98b6a
gnu: r-massspecwavelet: Update to 1.60.1. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.60.1.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus 6f2d89fb40
gnu: r-atacseqqc: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.18.1.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus 88ed3fc340
gnu: r-genomicscores: Update to 2.6.1. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.6.1.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus e129f579f5
gnu: r-clusterprofiler: Update to 4.2.2. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.2.2.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus 21037105ac
gnu: r-enrichplot: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.14.2.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus f8a38e8380
gnu: r-geoquery: Update to 2.62.2. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.62.2.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus fe6a8b4338
gnu: r-karyoploter: Update to 1.20.3. 
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.20.3.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus 84c0ec875c
gnu: r-destiny: Update to 3.8.1. 
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.8.1.
[native-inputs]: Add r-knitr.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus d625f52bca
gnu: r-chippeakanno: Update to 3.28.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.28.1.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus f7d7ba3613
gnu: r-diffbind: Update to 3.4.11. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.4.11.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus cf46f2c331
gnu: r-systempiper: Update to 2.0.8. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.8.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus 43053e08da
gnu: r-stringdb: Update to 2.6.5. 
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.6.5.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus a3ddba54fd
gnu: r-slingshot: Update to 2.2.1. 
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.2.1.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus 6dad28d221
gnu: r-rhdf5: Update to 2.38.1. 
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.38.1.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus 30027f837d
gnu: r-regioner: Update to 1.26.1. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.26.1.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus 06d13cf4b0
gnu: r-msnbase: Update to 2.20.4. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.4.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus e586613384
gnu: r-mutationalpatterns: Update to 3.4.1. 
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.4.1.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus 78f7de977a
gnu: r-limma: Update to 3.50.3. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.50.3.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus 68c1c989b6
gnu: r-genomicfeatures: Update to 1.46.5. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.46.5.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus 455636fecd
gnu: r-genomeinfodb: Update to 1.30.1. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.30.1.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus 9000c8acc2
gnu: r-ensembldb: Update to 2.18.4. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.4.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus e4816bcaed
gnu: r-biomart: Update to 2.50.3. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.50.3.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus ac67d0a467
gnu: r-annotationhub: Update to 3.2.2. 
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.2.2.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus f6bc281cd7
gnu: r-tricycle: Move out of annotation packages. 
* gnu/packages/bioconductor.scm (r-tricycle): Move definition out of the
section containing annotation packages.
 2022-04-14 06:55:20 +02:00
Ricardo Wurmus 8550976832
gnu: r-rbowtie: Fix build on architectures other than x86_64. 
* gnu/packages/bioconductor.scm (r-rbowtie)[arguments]: Disable use of popcnt
on systems other than x86_64.
 2022-04-12 16:00:01 +02:00
Ricardo Wurmus 418c6aff40
gnu: r-abn: Update to 2.7-0. 
* gnu/packages/bioconductor.scm (r-abn): Update to 2.7-0.
[propagated-inputs]: Add r-graph.
 2022-04-12 15:59:51 +02:00
Ricardo Wurmus ba5e32d9ce
gnu: r-nmf: Update to 0.24.0. 
* gnu/packages/bioconductor.scm (r-nmf): Update to 0.24.0.
 2022-04-12 15:59:51 +02:00
Mădălin Ionel Patrașcu 3704a7b897
gnu: Add r-tricycle. 
* gnu/packages/bioconductor.scm (r-tricycle): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-11 15:39:29 +02:00
Hong Li 730ac9ab85
gnu: Add r-stager. 
* gnu/packages/bioconductor.scm (r-stager): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-06 11:43:46 +02:00
Mădălin Ionel Patrașcu 0a5c2816ea
gnu: Add r-cycombine. 
* gnu/packages/bioconductor.scm (r-cycombine): New variable.
 2022-03-28 17:04:29 +02:00
zimoun 8a0713aef2
gnu: Add r-diffcyt. 
* gnu/packages/bioconductor.scm (r-diffcyt): New variable.
 2022-03-15 22:55:37 +01:00
zimoun fdbc472bd1
gnu: Add r-scannotatr. 
* gnu/packages/bioconductor.scm (r-scannotatr): New variable.
 2022-03-15 22:50:42 +01:00
Ricardo Wurmus 5a809551dc
gnu: Add r-ensdb-hsapiens-v86. 
* gnu/packages/bioconductor.scm (r-ensdb-hsapiens-v86): New variable.
 2022-03-10 13:44:58 +01:00
Ricardo Wurmus 6a6a514ef4
gnu: Add r-ensdb-mmusculus-v79. 
* gnu/packages/bioconductor.scm (r-ensdb-mmusculus-v79): New variable.
 2022-03-10 13:44:58 +01:00
Ricardo Wurmus 80b0e79629
gnu: r-abn: Update to 2.6-0. 
* gnu/packages/bioconductor.scm (r-abn): Update to 2.6-0.
[propagated-inputs]: Add r-doparallel and r-foreach.
 2022-01-23 14:01:31 +01:00
Ricardo Wurmus c486d20dc7
gnu: r-activepathways: Update to 1.0.4. 
* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.0.4.
 2022-01-23 14:01:31 +01:00