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3505 Commits (09279ad1f38f6ad47aca3ccfb81d88a04b9cf63f)

Author SHA1 Message Date
Felix Gruber 86af6091d8
gnu: c++-gsl: Fix build with GCC 10.
* gnu/packages/cpp.scm (c++-gsl)[source]: Add a patch from Debian
  to fix compilation of a test.
* gnu/packages/patches/c++-gsl-move-array-bounds-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-09-06 09:43:08 +02:00
Danny Milosavljevic dd7df191b6
gnu: u-boot-nintendo-nes-classic-edition: Make it actually boot again.
* gnu/packages/patches/u-boot-nintendo-nes-serial.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add u-boot-nintendo-nes-serial.patch.
* gnu/packages/bootloaders.scm (u-boot-nintendo-nes-classic-edition): Downgrade to 2018.11.
[source]: Add patch.
[description]: Modify.
[native-inputs]: Add python-2.
2021-09-05 23:45:29 +02:00
Sarah Morgensen 48bd27863f
gnu: pipewire: Fix build with GCC 10.
* gnu/packages/patches/pipewire-0.2.7-fno-common.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/linux.scm (pipewire)[source]: Use it.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-09-05 11:01:45 +02:00
Lars-Dominik Braun 46ba1bb068
gnu: beets: Update to 1.5.0.
* gnu/packages/music.scm (beets) [version]: Update to 1.5.0.
[#:phases]: Keep testcase, switch to pytest and respect tests?.
[native-inputs]: Move plugin dependencies…
[inputs]: …here.
* gnu/packages/music.scm (beets-next): Mark as deprecated.
* gnu/packages/patches/beets-werkzeug-compat.patch: Delete patch.
* gnu/local.mk: Deregister it.
2021-09-04 14:53:35 +02:00
Simon Streit ab12354c0a
gnu: python-mediafile: Update to 0.7.0.
Remove patch. It is now included in upstream release.

* gnu/packages/music.scm (python-mediafile): Update to 0.7.0.
* gnu/packages/patches/python-mediafile-wavpack.patch: Delete patch.
* gnu/local.mk: Deregister it.
2021-09-04 14:53:34 +02:00
Ludovic Courtès 7f50543d55
gnu: classpath-bootstrap: Work around miscompilation.
Fixes <https://issues.guix.gnu.org/49990>.

Previously, building 'ant-bootstrap' would fail in obscure ways.

* gnu/packages/patches/classpath-miscompilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/java.scm (classpath-bootstrap)[source]: Use it.
[arguments]: Remove 'remove-call-to-free' phase.
2021-09-03 11:38:43 +02:00
Ludovic Courtès a5fb1f4eeb
gnu: mailutils: Look up Scheme variables in the right module.
Fixes <https://issues.guix.gnu.org/49295>.
Reported by Maxime Devos <maximedevos@telenet.be>.

* gnu/packages/patches/mailutils-variable-lookup.patch: New file.
* gnu/packages/mail.scm (mailutils)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-09-01 23:41:41 +02:00
Guillaume Le Vaillant 8948bc7e44
gnu: evolution: Fix building with cmake > 3.20.
* gnu/packages/patches/evolution-printableoptions.patch: New file.
* gnu/packages/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (evolution)[source]: Use it.
2021-08-30 13:27:10 +02:00
Guillaume Le Vaillant a68c45459d
gnu: evolution-data-server: Fix building with cmake > 3.20.
* gnu/packages/patches/evolution-data-server-printableoptions.patch: New file.
* gnu/packages/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (evolution-data-server)[source]: Use it.
2021-08-30 11:48:20 +02:00
Guillaume Le Vaillant d011429b42
gnu: python-chai: Remove Python2 code.
* gnu/packages/patches/python-chai-drop-python2.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python-xyz.scm (python-chai)[source]: Use it.
2021-08-28 23:33:08 +02:00
Leo Famulari 4c9d8ff142
gnu: QtWebKit: Fix building with Bison 3.7.
* gnu/packages/patches/qtwebkit-fix-building-with-bison-3.7.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/qt.scm (qtwebkit)[source]: Use it.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-08-28 18:08:30 +02:00
Leo Famulari e3b037392a
gnu: QtWebKit: Fix building with glib 2.68.
* gnu/packages/patches/qtwebkit-fix-building-with-glib-2.68.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/qt.scm (qtwebkit)[source]: Use it.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-08-28 18:08:30 +02:00
Leo Famulari fc137ffe09
gnu: QtWebKit: Fix building with ICU 68.
* gnu/packages/patches/qtwebkit-fix-building-with-icu-68.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/qt.scm (qtwebkit)[source]: Use it

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-08-28 18:08:30 +02:00
Leo Famulari f5fda6eeab
gnu: QtWebKit: Fix building with Python 3.9.
* gnu/packages/patches/qtwebkit-fix-building-with-python-3.9.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/qt.scm (qtwebkit)[source]: Use it.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-08-28 18:08:30 +02:00
Mathieu Othacehe 004cab1bf6
gnu: glade3: Update to 3.38.2.
* gnu/packages/patches/glade-gls-set-script-name.patch: New patch.
* gnu/packages/patches/glade-test-widget-null-icon.patch: New patch.
* gnu/local.mk (DIST_PATCH_DATA): Add them.
* gnu/packages/gnome.scm (glade3): Update to 3.38.2.
[source]: Apply the patches.
[arguments]: Add new skip-gtk-update-icon-cache and fix-tests phases.
Adapt the fix-docbook phase to the meson build system.
[native-inputs]: Add glib, python-pyobject, gobject-introspection and
gjs. Remove python 2.
2021-08-19 16:01:27 +02:00
Mathieu Othacehe 100520bab3
gnu: gtk-doc: Update to 1.33.2.
* gnu/packages/patches/gtk-doc-respect-xml-catalog.patch: New file.
* gnu/local.mk (DIST_PATCH_DATA): Add it.
* gnu/packages/gtk.scm (gtk-doc): Update to 1.33.2.
[source]: Add gtk-doc-respect-xml-catalog.patch patch.
[build-system]: Switch to meson.
[arguments]: Remove fix-docbook phase.
Remove configure flags that are no longer needed.
[outputs]: Remove the help output since the help-dir option no longer exists.
2021-08-19 16:01:27 +02:00
Marius Bakke c4133c43c7
Merge branch 'master' into core-updates-frozen
Conflicts:
	gnu/packages/algebra.scm
	gnu/packages/games.scm
	gnu/packages/golang.scm
	gnu/packages/kerberos.scm
	gnu/packages/mail.scm
	gnu/packages/python.scm
	gnu/packages/ruby.scm
	gnu/packages/scheme.scm
	gnu/packages/tex.scm
	gnu/packages/tls.scm
	gnu/packages/version-control.scm
2021-08-12 00:30:27 +02:00
Efraim Flashner db8e8eb171
gnu: python-testtools: Update to 2.5.0.
* gnu/packages/check.scm (python-testtools): Update to 2.5.0.
[propagated-inputs]: Remove python-mimeparse, python-pbr, python-six,
python-traceback2, python-unittest2.
(python-testtools-bootstrap)[source]: Remove patch.
* gnu/packages/patches/python-testtools.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-08-11 16:16:51 +03:00
Efraim Flashner 02fbd89f2b
gnu: python-fixtures: Fix building.
* gnu/packages/check.scm (python-fixtures-bootstrap)[source]: Add patch.
* gnu/packages/patches/python-fixtures-remove-monkeypatch-test.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-08-11 16:13:56 +03:00
Efraim Flashner 23b9dadc1d
gnu: python-docopt: Fix test suite for pytest-6.
* gnu/packages/python-xyz.scm (python-docopt)[source]: Add patch.
* gnu/packages/patches/python-docopt-pytest6-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-08-09 10:00:38 +03:00
Leo Famulari f4f4037fcd
gnu: vigra: Update to 1.11.1-0.9b514fa.
* gnu/packages/image.scm (vigra): Update to 1.11.1-0.9b514fa.
[source]: Use git-fetch. Remove obsolete patch.
* gnu/packages/patches/vigra-python-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-07-27 12:34:57 -04:00
Efraim Flashner 086183598e
gnu: gnupg-1: Fix build with gcc-10.
* gnu/packages/gnupg.scm (gnupg-1)[source]: Add patch.
* gnu/packages/patches/gnupg-1-build-with-gcc10.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-08-08 13:51:11 +03:00
Ludovic Courtès 058b339d31
gnu: ocaml@4.09: Fix link failure.
* gnu/packages/patches/ocaml-4.09-multiple-definitions.patch: New file.
* gnu/packages/ocaml.scm (ocaml-4.09)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-08-05 15:46:46 +02:00
Ludovic Courtès 1d580f47a9
gnu: ocaml@4.07: Fix link failure.
The link failure shows up when using ld from GNU Binutils 2.37, and not
with 2.34.

* gnu/packages/patches/ocaml-multiple-definitions.patch: New file.
* gnu/packages/ocaml.scm (ocaml-4.07-boot)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-08-05 15:46:46 +02:00
Ludovic Courtès 1685128e6e
gnu: mesa-opencl, mesa-opencl-icd: Build all the LLVM targets again.
Reported by John Kehayias <john.kehayias@protonmail.com>
in <https://issues.guix.gnu.org/49794>.

* gnu/packages/patches/mesa-opencl-all-targets.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gl.scm (mesa-opencl)[source]: Use it.
2021-08-03 18:18:45 +02:00
Marius Bakke d2e102d4e4
Merge branch 'master' into core-updates-frozen 2021-08-01 23:23:32 +02:00
Ludovic Courtès 0a1a1ad213
gnu: glib-networking: Skip failing test.
* gnu/packages/patches/glib-networking-gnutls-binding.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (glib-networking)[source]: Use it.
2021-07-31 23:42:21 +02:00
Ludovic Courtès 69dde4e354
gnu: gnutls: Patch the Guile bindings for EINTR/EAGAIN handling.
* gnu/packages/patches/gnutls-guile-eintr-eagain.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (gnutls)[source]: Use it.
2021-07-31 15:44:58 +02:00
Marius Bakke b029be2ee0
Merge branch 'master' into core-updates-frozen
Conflicts:
	gnu/packages/bioinformatics.scm
	gnu/packages/cmake.scm
	gnu/packages/curl.scm
	gnu/packages/emacs-xyz.scm
	gnu/packages/gpodder.scm
	gnu/packages/music.scm
	gnu/packages/patches/glibc-bootstrap-system.patch
	gnu/packages/python-xyz.scm
	gnu/packages/shells.scm
	gnu/packages/statistics.scm
2021-07-29 22:34:57 +02:00
Efraim Flashner 7975a64b6d
gnu: julia-tracker: Patch for julia-1.6.
* gnu/packages/julia-xyz.scm (julia-tracker)[source]: Add patch.
* gnu/packages/patches/julia-tracker-16-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-07-29 14:43:27 +03:00
Philip McGrath 65bad4d036
gnu: racket: Unbundle racket-minimal.
This change takes advantage of improved support for layered
and tethered installations in Racket 8.2.

* gnu/packages/racket.scm (extend-layer): New private variable.
This is a script for configuring a new config-tethered layer
chaining to an existing Racket installation.
* gnu/packages/racket.scm (racket)[source](snippet): Unbundle
`racket-minimal`.
[inputs]: Remove inputs that properly belong to `racket-minimal`.
[native-inputs]: Add `racket-minimal` and `extend-layer`.
[arguments]: Stop inheriting from `racket-minimal`. Add phase
'unpack-packages to move the sources and links file into place.
Replace 'configure phase using `extend-layer`.
Replace 'build phase using `raco setup`.
Delete 'install phase.
* gnu/packages/patches/racket-sh-via-rktio.patch: Rename to ...
* gnu/packages/patches/racket-minimal-sh-via-rktio.patch: ... this
file to placate `guix lint`.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/racket.scm (racket-minimal)[source]: Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-31 01:03:25 +02:00
Ludovic Courtès 630c39d8df
gnu: onnx: Change source to 'git-fetch'.
* gnu/packages/machine-learning.scm (onnx)[source]: Change to
'git-fetch'.  Add "onnx-skip-model-downloads.patch".
[arguments]: Add 'make-test-directory-writable' phase.
* gnu/packages/patches/onnx-skip-model-downloads.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-07-31 01:03:24 +02:00
Ludovic Courtès fa2d94b5e3
gnu: python-onnx: Rename to "onnx".
* gnu/packages/machine-learning.scm (python-onnx): Rename to...
(onnx): ... this, and change 'name' field accordingly.
(python-onnx): New variable.
* gnu/packages/patches/python-onnx-shared-libraries.patch: Rename to...
* gnu/packages/patches/onnx-shared-libraries.patch: ... this.
* gnu/packages/patches/python-onnx-use-system-googletest.patch: Rename
to...
* gnu/packages/patches/onnx-use-system-googletest.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-07-31 01:03:24 +02:00
Ludovic Courtès 2b55f914c3
gnu: python-onnx: Install libonnx.so and libonnx_proto.so.
* gnu/packages/patches/python-onnx-shared-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/machine-learning.scm (python-onnx)[source]: Use it.
[arguments]: New field.
2021-07-31 01:03:23 +02:00
Maxim Cournoyer 4613a9948a
gnu: Add drpm.
* gnu/packages/rpm.scm: Add file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register it.
2021-07-29 22:03:34 -04:00
Ludovic Courtès b402a3ec86
gnu: Add XNNPACK.
* gnu/packages/machine-learning.scm (xnnpack): New variable.
* gnu/packages/patches/xnnpack-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-07-29 21:54:55 +02:00
Ludovic Courtès 1daa662722
gnu: Add FP16.
* gnu/packages/patches/fp16-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (fp16): New variable.
2021-07-29 21:54:55 +02:00
Ludovic Courtès 4c5ad82780
gnu: Add cpuinfo.
* gnu/packages/parallel.scm (cpuinfo): New variable.
* gnu/packages/patches/cpuinfo-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-07-29 21:54:55 +02:00
Ludovic Courtès 18d04fef0f
gnu: Add pthreadpool.
* gnu/packages/parallel.scm (pthreadpool): New variable.
* gnu/packages/patches/pthreadpool-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-07-29 21:54:54 +02:00
Ludovic Courtès a9bc8a25eb
gnu: Add FXDiv.
* gnu/packages/maths.scm (fxdiv): New variable.
* gnu/packages/patches/fxdiv-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-07-29 21:54:54 +02:00
Ludovic Courtès b4452ffe9b
build: Build (gnu packages rocm).
This is a followup to df90cb1d5c.

* gnu/local.mk (GNU_SYSTEM_MODULES): Add %D%/packages/rocm.scm.
2021-08-30 14:27:30 +02:00
Ludovic Courtès 8e8d85f722
build: Build (gnu system setuid).
This is a followup to 45235e67e4.

* gnu/local.mk (GNU_SYSTEM_MODULES): Add %D%/system/setuid.scm.
2021-08-30 12:26:03 +02:00
Maxim Cournoyer b1ef8b410c
gnu: python-pytest-asyncio: Enable tests and patch for Python 3.8.
* gnu/packages/patches/python-pytest-asyncio-python-3.8.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/check.scm (python-pytest-asyncio)
[source]: Fetch from git and apply above patch.
[phases]: Override the check phase, enabling tests.
2021-08-29 01:05:28 -04:00
Maxim Cournoyer 1d94000d87
gnu: python-execnet: Update to 1.9.0 and enable tests.
* gnu/packages/patches/python-execnet-read-only-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python-xyz.scm (python-execnet): Update to 1.9.0.
[source]: Fix indentation.
[arguments]: Enable tests, replacing the default check phase.
2021-08-29 01:05:27 -04:00
Maxime Devos 7b9d5b6ca0
gnu: minetest: New package module.
Aside from the 'minetest-topic' procedure which will be used
for the 'home-page' field of some packages, this module is
currently empty.  The 'contentdb' importer defined in the
following patches will be used to populate this module.

* gnu/packages/minetest.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-08-20 12:41:53 +02:00
Maxime Devos bb61100ee3
gnu: minetest: Search for mods in MINETEST_MOD_PATH.
* gnu/packages/patches/minetest-add-MINETEST_MOD_PATH.patch: New file.
* gnu/packages/games.scm
  (minetest)[source]{patches}: Add it.
  (minetest)[native-search-paths]: Add "MINETEST_MOD_PATH".
* gnu/local.mk (dist_patch_DATA): Add the patch.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-08-20 12:41:30 +02:00
Arun Isaac d31301dfe0
gnu: Add python-pyan3.
* gnu/packages/python-xyz.scm (python-pyan3): New variable.
* gnu/packages/patches/python-pyan3-fix-absolute-path-bug.patch,
gnu/packages/patches/python-pyan3-fix-positional-arguments.patch: New files.
* gnu/local.mk: Register them.
2021-08-18 19:27:58 +05:30
Giovanni Biscuolo 05effbbfc2
gnu: adb: Make compatible with OpenSSL 1.1.
OpenSSL version 1.1 brought some API changes which broke the build here, fix
that by accessing rsa->n (and e) directly, using RSA_get0_key instead.

* gnu/packages/patches/adb-libssl_11-compatibility.patch: New file
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/android.scm (android-platform-system-core)[origin]: Use it.
(adb)[inputs]: Replace openssl-1.0 with openssl.
2021-07-27 12:34:57 -04:00
Ludovic Courtès 168d107abf
gnu: rocm-opencl-runtime: Shorten patch file name.
This appeases 'guix lint -c patch-file-names'.

* gnu/packages/patches/rocm-opencl-runtime-3.10.0-add-rocclr-include-directories.patch:
Rename to...
* gnu/packages/patches/rocm-opencl-runtime-3.10.0-includes.patch: ... this.
* gnu/packages/rocm.scm (rocm-opencl-runtime)[source]: Adjust accordingly.
* gnu/local.mk (dist_patch_DATA): Likewise.
2021-08-11 16:35:28 +02:00
Mathieu Othacehe 1872dce578
gnu: drones: Remove it.
Remove this file as the ardupilot packages are broken for a long time and no
one complained.

* gnu/packages/drones.scm: Remove it.
* gnu/local.mk (GNU_SYSTEM_MODULES): Ditto.
2021-08-12 19:39:20 +02:00
Lars-Dominik Braun c0f10a5dd4
gnu: Add rocm-opencl-runtime.
* gnu/packages/rocm.scm (rocm-opencl-runtime): New variable.
* gnu/packages/patches/rocm-opencl-runtime-3.10.0-add-rocclr-include-directories.patch,
gnu/packages/patches/rocm-opencl-runtime-4.3-noclinfo.patch,
gnu/packages/patches/rocm-opencl-runtime-4.3-nocltrace.patch,
gnu/packages/patches/rocm-opencl-runtime-4.3-noopencl.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2021-08-08 16:47:56 +02:00
Lars-Dominik Braun 9c083e7063
gnu: Add rocm-comgr.
* gnu/packages/rocm.scm (rocm-comgr): New variable.
* gnu/packages/patches/rocm-comgr-3.1.0-dependencies.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-08-08 16:47:55 +02:00
Lars-Dominik Braun c5ee2cf72a
gnu: Add llvm-for-rocm.
* gnu/packages/rocm.scm (llvm-for-rocm): New variable.
* gnu/packages/patches/llvm-roc-3.0.0-add_libraries.patch,
gnu/packages/patches/llvm-roc-4.0.0-remove-isystem-usr-include.patch,
gnu/packages/patches/llvm-roc-4.2.0-add_Object.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2021-08-08 16:47:55 +02:00
Sarah Morgensen 1273548f4f
gnu: restic: Patch tests for go-1.16.
* gnu/packages/patches/restic-0.9.6-fix-tests-for-go1.15.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/backup.scm (restic): Use it.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-08-05 22:56:49 -04:00
Maxim Cournoyer 49432f6534
gnu: pypy3: Update to 7.3.5.
The patch disabling tests is removed because it only fixes 2 out of 43 test
failures.

* gnu/packages/patches/pypy3-7.3.1-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
* gnu/packages/python.scm (pypy3): Update to 7.3.5.
[patches]: Remove patch.
2021-08-05 10:29:58 -04:00
Ludovic Courtès dd55ad7ff8
gnu: Add python-pytorch.
* gnu/packages/machine-learning.scm (python-pytorch): New variable.
* gnu/packages/patches/python-pytorch-runpath.patch,
gnu/packages/patches/python-pytorch-system-libraries.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2021-08-04 17:22:19 +02:00
Dmitry Polyakov 2e0ddc74f6
gnu: Add instead.
* gnu/packages/game-development.scm (instead): New variable.
* gnu/packages/patches/instead-use-games-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it here.
2021-08-04 15:44:09 +02:00
Efraim Flashner f71b381d1f
gnu: samba: Update to 4.13.10.
* gnu/packages/samba.scm (samba): Update to 4.13.10.
[source]: Remove patch.
* gnu/packages/patches/samba-fix-fcntl-hint-detection.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-08-04 16:34:32 +03:00
Maxim Cournoyer 10f554700c
Reinstate "services: Add a service for Jami."
This reverts commit 4673f81793, which reverted
commit 69dcc24c9f with the fix detailed below.

Thanks to Christopher Baines for reporting the failure and proposing a fix.

* guix/self.scm (compiled-guix) [*system-test-modules*]: Add the test data
files via the 'extra-files' argument.
* gnu/local.mk (dist_patch_DATA): Move the tests/data/jami-dummy-account.dat
file to...
* gnu/local.mk (MODULES_NOT_COMPILED): ... here.
2021-08-02 17:23:30 -04:00
Maxim Cournoyer 4673f81793
Revert "services: Add a service for Jami."
This reverts commit 69dcc24c9f.  It broke 'guix
pull'.
2021-08-02 15:48:59 -04:00
Maxim Cournoyer 69dcc24c9f
services: Add a service for Jami.
* gnu/services/telephony.scm (string-or-computed-file?)
(string-list?, account-fingerprint-list?): New procedures.
(maybe-string-list, maybe-account-fingerprint-list)
(maybe-boolean, maybe-string, jami-account-list): New configuration field
types.
(serialize-string-list, serialize-boolean, serialize-string)
(jami-account, jami-account->alist, jami-configuration)
(jami-account-list?, jami-account-list-maybe): New procedures.
(%jami-accounts): New variable.
(jami-configuration->command-line-arguments): New procedure.
(jami-dbus-session-activation, jami-shepherd-services): New procedures.
(jami-service-type): New variable.
* gnu/build/jami-service.scm: New file.
* gnu/tests/data/jami-dummy-account.dat: Likewise.
* gnu/tests/telephony.scm: Likewise.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register them.
* Makefile.am (SCM_TESTS): Register the test file.
(dist_patch_DATA): Register the new data file.
* doc/guix.texi (Telephony Services): Document it.
2021-08-02 15:15:02 -04:00
Ludovic Courtès 6da2b35b60
gnu: Add onnx-optimizer.
* gnu/packages/machine-learning.scm (onnx-optimizer): New variable.
* gnu/packages/patches/onnx-optimizer-system-library.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-08-02 18:11:33 +02:00
Pierre Langlois eb46c6c5c8
gnu: u-boot: Update to 2021.07.
* gnu/packages/patches/u-boot-sifive-prevent-reloc-initrd-fdt.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/bootloaders.scm (%u-boot-sifive-prevent-relocating-initrd-fdt):
New variable.
(u-boot): Update to 2021.07.
[native-inputs]: Add python-pycryptodomex.
(u-boot-2021.07): Delete variable.
(u-boot-tools)[arguments]: Adapt 'patch phase, disable failing test_spl test.
(u-boot-sifive-unmatched): Use default u-boot package.
(u-boot-pinebook-pro-rk3328): Use default u-boot package.
2021-08-02 13:23:32 +01:00
Wiktor Żelazny 769326cf18
gnu: Add marble-qt.
* gnu/packages/patches/marble-qt-add-qt-headers.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/geo.scm (marble-qt): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-25 13:51:45 +02:00
Tobias Geerinckx-Rice c7b51b799d
gnu: esmtp: Fix build with libesmtp >= 1.1.0.
* gnu/packages/mail.scm (esmtp)[source]: Add patch.
* gnu/packages/patches/esmtp-add-lesmtp.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-07-24 23:59:07 +02:00
Ludovic Courtès 1feca4be52
gnu: glibc: Remove versions 2.27 and 2.28.
* gnu/packages/base.scm (glibc-2.28, glibc-2.27): Remove.
* gnu/packages/patches/glibc-2.27-git-fixes.patch,
gnu/packages/patches/glibc-2.27-supported-locales.patch,
gnu/packages/patches/glibc-2.28-git-fixes.patch,
gnu/packages/patches/glibc-2.28-supported-locales.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-07-24 16:23:24 +02:00
Marius Bakke abe5ffbbfe
gnu: libxml2: Update to 2.9.12.
* gnu/packages/patches/libxml2-parent-pointers.patch,
gnu/packages/patches/libxml2-terminating-newline.patch,
gnu/packages/patches/libxml2-xpath-recursion-limit.patch: New files.
* gnu/packages/patches/python-libxml2-python39-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/xml.scm (libxml2): Update to 2.9.12.
(python-lxml)[source](modules, snippet): New fields.
2021-07-23 17:26:46 +02:00
Marius Bakke 2fa26446a1
gnu: binutils: Update to 2.37.
* gnu/packages/patches/binutils-loongson-workaround.patch: Adjust for upstream
changes.
* gnu/packages/patches/binutils-libiberty-endianness-bug.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/base.scm (binutils): Update to 2.37.
[source](patches): Remove obsolete patch.
2021-07-23 17:26:45 +02:00
Marius Bakke 2a592d43ef
gnu: Perl: Update cross-compilation code.
* gnu/packages/perl.scm (perl)[native-inputs]: Update "perl-cross" to 1.3.6.
[arguments]: Remove obsolete patch.
* gnu/packages/patches/perl-cross.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-07-23 17:26:44 +02:00
宋文武 89ea0918a4
gnu: Add drawterm.
* gnu/packages/plan9.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2021-07-22 19:52:53 +08:00
Chris Marusich 93a5e89008
gnu: glibc-2.31: Restore patches.
Commit 87961fc965 inadvertently modified the
patch set for glibc-2.31.  This change restores the original patch set.

Fixes: <https://bugs.gnu.org/49516>.

* gnu/packages/base.scm (glibc-2.31) [source]: Use the same patches as glibc,
but replace glibc-hurd-clock_gettime_monotonic.patch with
glibc-2.31-hurd-clock_gettime_monotonic.patch, and add
glibc-hurd-signal-sa-siginfo.patch.
* gnu/packages/patches/glibc-2.31-hurd-clock_gettime_monotonic.patch: Add it.
* gnu/packages/patches/glibc-hurd-signal-sa-siginfo.patch: Add it.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-07-21 16:02:42 -07:00
Nathan Benedetto Proença c3e33474b9
gnu: biber: Update to 2.16.
* gnu/packages/tex.scm (biber): Update to 2.16.
[source]: Remove 'patches'.
[inputs]: Add 'perl-io-string', 'perl-parse-recdescent', and
'perl-unicode-collate' (upstream appears to have fixed the issue
initially mentioned as a comment: recent issue was closed after
telling user to use perl-unicode-collate 1.29, which is the one
available; see <https://github.com/plk/biber/issues/378>.)
* gnu/packages/patches/biber-fix-encoding-write.patch,
gnu/packages/patches/biber-sortinithash.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2021-07-21 15:59:29 +02:00
Charles d16148fcfd
gnu: Add node-uglify-js.
* gnu/packages/uglifyjs.scm (node-uglify-js, uglifyjs): New variables.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-19 14:43:29 +03:00
Ludovic Courtès 0e47fcced4
Merge branch 'master' into core-updates 2021-07-18 19:50:01 +02:00
Justin Veilleux 9cb35c0216
gnu: Add transmission-remote-gtk.
* gnu/packages/bittorrent.scm (transmission-remote-gtk): New variable.
* gnu/packages/patches/transmission-remote-gtk-fix-appstream.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Leo Famulari <leo@famulari.name>
2021-07-16 23:53:46 -04:00
Z572 4094d12df1
gnu: Add ark.
* gnu/packages/kde-utils.scm (ark): New variable.
* gnu/packages/patches/ark-skip-xar-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-07-16 00:06:05 -04:00
Maxim Cournoyer c881516d48
gnu: proot: Update to 5.2.0-alpha.
This allows proot to be built for aarch64-linux and armhf-linux.

* gnu/packages/patches/proot-test-fhs.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Un-register it.
* gnu/packages/linux.scm: Update to 5.2.0-alpha.
[patches]: Remove field.
[supported-system]: New field.
[tests?]: Disable for ARM-based systems.
[phases]{fix-fhs-assumptions-in-tests, set-shell-file-name}: Combine into...
{patch-sources}: ... this new phase.
{build-manpage}: New phase.
{check}: Add seccomp issue URL in comment.
[native-inputs]: Add coreutils issue URL in comment.  Add pkg-config and
python-docutils.
[inputs]: Add libarchive.
2021-07-12 11:37:40 -04:00
Sarah Morgensen 6f12880a76
gnu: fontconfig: Use (locally) deterministic caching
Make fontconfig use directory contents rather than modification time to
determine cache validity (by pretending that mtime is broken).

* gnu/packages/patches/fontconfig-cache-ignore-mtime.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/fontutils.scm (fontconfig)[source]: Use it.
[arguments]: Unset SOURCE_DATE_EPOCH for tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-11 18:17:31 +02:00
Ludovic Courtès c823b95825
gnu: coreutils: Patch broken Gnulib tests.
Fixes <https://bugs.gnu.org/49459>.

* gnu/packages/patches/coreutils-gnulib-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (coreutils)[source]: Use it.
2021-07-10 01:31:42 +02:00
Zhu Zihao d0ccdd707d
gnu: Add emacs-telega-server.
* gnu/packages/emacs-xyz.scm (emacs-telega-server): New variable.
* gnu/packages/patches/emacs-telega-path-placeholder.patch: New file.
* gnu/package/patches/emacs-telega-patch-server-functions.patch: Remove stale patch.
* gnu/local.mk (dist_patch_DATA): Update accordingly.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-07-09 15:08:04 +02:00
Ludovic Courtès 9bfc4a8187
gnu: python-seaborn: Update to 0.11.1.
* gnu/packages/patches/python-seaborn-kde-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python-xyz.scm (python-seaborn): Use it, and update to
0.11.1.
2021-07-09 11:58:50 +02:00
Ludovic Courtès 145a5a5797
gnu: glibc: Fix cross-compilation to powerpc64le-linux-gnu.
Fixes <https://bugs.gnu.org/49417>.
Reported by Maxime Devos <maximedevos@telenet.be>.

* gnu/packages/patches/glibc-cross-objcopy.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc)[source]: Use it.
2021-07-08 00:28:56 +02:00
Leo Famulari 99aecc0988
gnu: VTK 8: Re-fix a build failure with recent versions of freetype.
* gnu/packages/patches/vtk-8-fix-freetypetools-build-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image-processing.scm (vtk-8): Dis-inherit from VTK. Use the
package definition that predated the update to VTK 9, taken from commit
f4dc8ac6df.
2021-07-07 16:50:21 -04:00
Raghav Gururajan aa6e6fb2e9
gnu: Add ytfzf.
* gnu/packages/image-viewers.scm (ytfzf): New variable.

Co-authored-by: jgart <jgart@dismail.de>
2021-07-06 01:27:29 -04:00
Ludovic Courtès 949ed7aae1
gnu: glibc: Fix cross-compilation to aarch64-linux-gnu.
Fixes <https://bugs.gnu.org/49113>.
Reported by Maxime Devos <maximedevos@telenet.be>.

Previously, the cross-compiled libc.so linker script would read:

  OUTPUT_FORMAT(elf64-little)

instead of:

  OUTPUT_FORMAT(elf64-littleaarch64)

This is because glibc 2.33 runs "objdump -f" instead of
"aarch64-linux-gnu-objdump -f" to determine the output format.

* gnu/packages/patches/glibc-cross-objdump.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc)[source]: Use it.
2021-07-04 22:10:06 +02:00
Tobias Geerinckx-Rice 243d74579d
gnu: libgrss: Fix CVE-2016-20011.
* gnu/packages/gnome.scm (libgrss): Add patch.
* gnu/packages/patches/libgrss-CVE-2016-2001.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-07-04 03:06:03 +02:00
Efraim Flashner b7d70aeb0b
gnu: tor: Update to 0.4.6.6.
* gnu/packages/tor.scm (tor): Update to 0.4.6.6.
[source]: Remove patch.
* gnu/packages/patches/tor-fix-build-with-gcc-7.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-06-30 20:02:32 +03:00
Raghav Gururajan 55b1466303
Revert "gnu: Add ytfzf."
This reverts commit 3fdb2d6792,
as it was accidentally pushed.
2021-06-28 17:56:33 -04:00
LibreMiami 3fdb2d6792
gnu: Add ytfzf.
* gnu/packages/image-viewers.scm (ytfzf): New variable.

Co-authored-by: Raghav Gururajan <rg@raghavgururajan.name>
Co-authored-by: jgart <jgart@dismail.de>
2021-06-28 17:43:24 -04:00
Sarah Morgensen e3e4cbb93f
gnu: Add go-1.16.
Add go@1.16 as a non-default go. Changes from 1.14: Use now-supported GO_LDSO
configuration option for setting the interpreter. Bootstrap with gccgo on
platforms which do not support go-1.4. Fix and re-enable cmd/go script tests.
Fix typo in cgoldflags patch. Break out tests into "check" phase. Remove
references to perl to reduce closure size by ~10%. Set GOCACHE so go doesn't
attempt to access $HOME.

* gnu/packages/patches/go-fix-script-tests.patch: New file.
* local.mk (dist_patch_DATA): Register it.
* gnu/packages/golang.scm (go-1.16): New variable. Use the patch.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-06-28 22:19:50 +03:00
Timotej Lazar 076bbc440f
gnu: Add oneko.
* gnu/packages/toys.scm (oneko): New variable.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-06-28 20:46:14 +02:00
Tobias Geerinckx-Rice bf9dc75682
gnu: connman: Update to 1.40.
* gnu/packages/connman.scm (connman): Update to 1.40.
[source]: Remove upstreamed patch.
[inputs]: Add lz4, rather than propagate it from openconnect.
* gnu/packages/patches/connman-CVE-2021-33833.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-06-25 19:02:35 +02:00
Sharlatan Hellseher 8a40a964e0
gnu: Add cl-nst.
Initiate new lisp-check module the same way as other language specific
ones (python-check, haskell-check).

* gnu/local.mk (GNU_SYSTEM_MODULES): Add lisp-check.scm.
* gnu/packages/lisp-check.scm (sbcl-nst, ecl-nst, cl-nst): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-06-24 14:22:09 +02:00
Tobias Geerinckx-Rice a3d9af5eb1
gnu: Remove dead cups-CVE-2020-10001.patch.
* gnu/packages/patches/cups-CVE-2020-10001.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-06-23 18:53:11 +02:00
Tobias Geerinckx-Rice 9dea3f101f
Merge branch 'master' into core-updates
Conflicts:
	gnu/packages/cups.scm
	gnu/packages/python-web.scm
	gnu/packages/web.scm
	guix/build/maven/pom.scm
2021-06-23 18:45:21 +02:00
Tobias Geerinckx-Rice 620669fd17
gnu: cups: Add replacement to fix CVE-2020-10001.
* gnu/packages/patches/cups-CVE-2020-10001.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/cups.scm (cups-minimal/fixed): New variable.
(cups-minimal)[replacement]: Assign it to new field.
2021-06-23 18:41:23 +02:00
Jack Hill 30a04c00be
gnu: Add tlf.
* gnu/packages/patches/tlf-support-hamlib-4.2+.patch: New file.
* gnu/local.mk: Add it.
* gnu/packages/radio.scm (tlf): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-06-21 10:16:04 +02:00
Arun Isaac 0a90bea34d
gnu: linkchecker: Update to 10.0.1.
* gnu/packages/web.scm (linkchecker): Update to 10.0.1.
[source]: Remove patches.
[inputs]: Add python-beautifulsoup4. Replace python2-dnspython-1.16,
python2-pyxdg and python2-requests with python-dnspython, python-pyxdg and
python-requests respectively.
[native-inputs]: Replace python2-pytest, python2-miniboa and
python2-parameterized with python-pytest, python-miniboa and
python-parameterized respectively.
[arguments]: Use python 3. Replace check phase instead of deleting the
standard phase and adding a custom one. Use add-installed-pythonpath instead
of setting PYTHONPATH directly. Support disabling of tests with tests?.
[home-page]: Update URI.
* gnu/packages/patches/linkchecker-tests-require-network.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.
2021-06-20 00:24:11 +05:30
Marius Bakke 6f9a80b331
Merge branch 'master' into core-updates
Note: this merge actually changes the 'curl' and 'python-attrs' derivations,
as part of solving caf4a7a277 and
12964df69a respectively.

4604d43c0e (gnu: gnutls@3.6.16: Fix cross-compilation.) was ignored because it
cannot currently be tested.

 Conflicts:
	gnu/local.mk
	gnu/packages/aidc.scm
	gnu/packages/boost.scm
	gnu/packages/curl.scm
	gnu/packages/nettle.scm
	gnu/packages/networking.scm
	gnu/packages/python-xyz.scm
	gnu/packages/tls.scm
2021-06-19 17:38:47 +02:00
Marius Bakke dece03e2b9
gnu: Remove bsdiff traces.
This is a follow-up to 373c7b5791.

* gnu/packages/patches/bsdiff-CVE-2014-9862.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-06-19 17:17:02 +02:00
Marius Bakke 657aaa7be4
gnu: efivar: Adjust for GCC 10.
* gnu/packages/patches/efivar-gcc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/linux.scm (efivar)[source](patches, modules, snippet): New
fields.
[arguments]: Use CC-FOR-TARGET while at it.
2021-06-19 17:09:51 +02:00
Marius Bakke fbee3e134b
gnu: jfsutils: Adjust for GCC 10.
* gnu/packages/patches/jfsutils-gcc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/file-systems.scm (jfsutils)[source](patches): Add it.
2021-06-19 17:09:51 +02:00
Marius Bakke e4d5b509fe
gnu: isc-dhcp: Adjust for GCC 10.
* gnu/packages/patches/isc-dhcp-gcc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/admin.scm (isc-dhcp)[source](patches): New field.
2021-06-19 17:09:51 +02:00
Marius Bakke 5b6d264f12
gnu: ath9k-htc-firmware: Adjust for GCC 10.
* gnu/packages/patches/ath9k-htc-firmware-gcc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/firmware.scm (ath9k-htc-firmware)[source](patches): Add it.
2021-06-19 17:09:51 +02:00
Marius Bakke 2b2ecbace4
gnu: QEMU: Adjust for Sphinx 4.0.
* gnu/packages/patches/qemu-sphinx-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/virtualization.scm (qemu)[source](patches): Add it.
2021-06-19 17:09:51 +02:00
Ludovic Courtès caf4a7a277
gnu: curl@7.77.0: Provide a correct TLS priority string.
Fixes <https://bugs.gnu.org/49035>.

* gnu/packages/patches/curl-7.77-tls-priority-string.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/curl.scm (curl-7.77.0)[source]: Use it.
2021-06-18 17:40:10 +02:00
Boris A. Dekshteyn 624a6b60b5
gnu: inkscape: Update to version 1.1.
* gnu/packages/patches/inkscape-1.1-fix-build-witch-gcc7.5.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/inkscape.scm (inkscape-1.0) Rename to inkscape-1.1.
* gnu/packages/inkscape.scm (inkscape-1.1) Update to version 1.1.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-18 13:12:17 +02:00
Brice Waegeneire db87a223fe
gnu: brightnessctl: Add elogind support.
* gnu/packages/patches/brightnessctl-elogind-support.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/linux.scm (brightnessctl)[source]: Apply it.
[make-flags]: Enable logind support.
[native-inputs]: Add pkg-config.
[inputs]: Add elogind.
2021-06-17 07:27:45 +02:00
Leo Famulari e26efac68c
gnu: HexChat: Add Libera Chat to the list of networks.
* gnu/packages/patches/hexchat-add-libera-chat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/messaging.scm (hexchat)[source]: Use it.
2021-06-16 12:40:17 -04:00
Nicolas Goaziou ae31d80d00
gnu: Add rust-ndarray-0.13.
* gnu/packages/crates-io.scm (rust-ndarray-0.13): New variable.
(rust-ndarray-0.12): Inherit from above.
* gnu/packages/patches/rust-ndarray-0.13-remove-blas-src.patch: New file.
* gnu/local.mk: Register new file.
2021-06-16 12:52:46 +02:00
Tobias Geerinckx-Rice e7aac78ee9
gnu: tor: Update to 0.4.6.5.
* gnu/packages/tor.scm (tor): Update to 0.4.6.5.
[source]: Add a patch to fix building with GCC 7.
* gnu/packages/patches/tor-fix-build-with-gcc-7.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-06-14 23:21:16 +02:00
Carl Dong 83d9e2ee56
gnu: gcc-8: Make static libs reproducible
This fixes the nonreproducibility in gcc documented here:
https://reproducible-builds.org/docs/archives/#gnu-libtool

* gnu/packages/patches/gcc-8-sort-libtool-find-output.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gcc.scm (gcc-8)[source]: Apply it.
2021-06-14 12:29:11 -04:00
Ricardo Wurmus b2f0271c64
gnu: Add irods.
* gnu/packages/irods.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2021-06-14 16:35:06 +02:00
Mark H Weaver 3abaca2aae
gnu: nettle-3.5: Add replacement to fix CVE-2021-3580 et al.
* gnu/packages/patches/nettle-3.5-check-_pkcs1_sec_decrypt-msg-len.patch,
gnu/packages/patches/nettle-3.5-CVE-2021-3580-pt1.patch,
gnu/packages/patches/nettle-3.5-CVE-2021-3580-pt2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/nettle.scm (nettle)[replacement]: New field.
(nettle-3.5/fixed): New variable.
2021-06-14 03:30:03 -04:00
Leo Famulari ee48e784b9
gnu: connman: Fix CVE-2021-33833.
* gnu/packages/patches/connman-CVE-2021-33833.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/connman.scm (connman)[source]: Use it.
2021-06-13 14:45:19 -04:00
Marius Bakke 628a6c51d4
gnu: QEMU: Fix compatibility with Meson 0.58.
* gnu/packages/patches/qemu-meson-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/virtualization.scm (qemu)[source](patches): Add it.
2021-06-13 15:34:06 +02:00
Marius Bakke 84b238c8f2
gnu: libcacard: Update to 2.8.0.
* gnu/packages/patches/libcacard-unknown-variable.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/spice.scm (libcacard): Update to 2.8.0.
[source](patches): New field.
[arguments]: Remove trailing #t.
2021-06-13 15:34:02 +02:00
Marius Bakke 5d4b721b7d
gnu: graphviz: Update to 2.47.1.
* gnu/packages/graphviz.scm (graphviz): Update to 2.47.1.
[source]: Adjust for new download location.
* gnu/packages/patches/graphviz-CVE-2020-18032.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-06-13 01:00:46 +02:00
Marius Bakke 1dec7fa83d
gnu: curl: Absorb replacement.
* gnu/packages/patches/curl-7.76-use-ssl-cert-env.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/curl.scm (curl): Update to 7.77.0.
[replacement]: Remove.
(source)[patches]: Adjust for new patch.
2021-06-13 01:00:46 +02:00
Tobias Geerinckx-Rice 2d115ea7ed
gnu: grub: Update to 2.06.
[source]: Remove upstreamed patches.
* gnu/packages/patches/grub-setup-root.patch: Update patch.
* gnu/packages/patches/grub-verifiers-Blocklist-fallout-cleanup.patch,
gnu/packages/patches/grub-cross-system-i686.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2021-06-12 20:58:16 +02:00
Julien Lepiller 8ce96d8447
gnu: python: Do not install static libraries.
This is something Fedora already does since 2010, so it should be safe,
and saves a lot of space.

* gnu/packages/patches/python-2.7-no-static-lib.patch: New file.
* gnu/packages/patches/python-3-no-static-lib.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/python.scm (python-2.7, python-3): Use them.
2021-06-11 02:39:32 +02:00
Ludovic Courtès 9178566954
gnu: polkit: Add replacement for CVE-2021-3560.
* gnu/packages/patches/polkit-CVE-2021-3560.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/polkit.scm (polkit/fixed): New variable.
(polkit)[replacement]: New field.
2021-06-08 23:28:04 +02:00
Lars-Dominik Braun dbe607925a
gnu: xpra: Update to 4.2.
Fixes <https://issues.guix.gnu.org/issue/48890>.

* gnu/packages/xorg.scm (xpra): Update to 4.2.
[source]: Switch to ".tar.gz" archive and update patch file.
[native-inputs]: Add pandoc.
[arguments]: Adjust custom 'fix-paths phase for changes in source.
* gnu/packages/patches/xpra-4.2-systemd-run.patch: Adapt to new version
and rename file.
* gnu/local.mk (dist_patch_DATA): Rename file.

Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
2021-06-07 09:33:57 +02:00
Marius Bakke 8d59c262ad
Merge branch 'master' into core-updates
Conflicts:
	gnu/local.mk
	gnu/packages/algebra.scm
	gnu/packages/bioinformatics.scm
	gnu/packages/curl.scm
	gnu/packages/docbook.scm
	gnu/packages/emacs-xyz.scm
	gnu/packages/maths.scm
	gnu/packages/plotutils.scm
	gnu/packages/python-web.scm
	gnu/packages/python-xyz.scm
	gnu/packages/radio.scm
	gnu/packages/readline.scm
	gnu/packages/tls.scm
	gnu/packages/xml.scm
	gnu/packages/xorg.scm
2021-06-06 21:16:32 +02:00
Marius Bakke 1eee406b07
gnu: nss: Prepare for GCC 10.
* gnu/packages/patches/nss-getcwd-nonnull.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/nss.scm (nss)[source](patches): Add it.
2021-06-06 19:49:56 +02:00
Efraim Flashner b65c02e2d3
gnu: freebayes: Update to 1.3.5.
* gnu/packages/bioinformatics.scm (freebayes): Update to 1.3.5.
[source]: Remove patch.
[arguments]: Adjust custom 'patch-source phase for changes in source.
[inputs]: Remove zlib.
* gnu/packages/patches/freebayes-devendor-deps.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-06-06 12:13:28 +03:00
Maxim Cournoyer 63858f8c8b
gnu: gnutls: Update to 3.7.2.
The 3.7 branch, while not considered the "stable" branch upstream, has been
adopted by most major GNU/Linux distributions such as Debian, Arch, openSUSE,
etc.  It has the benefit of receiving all the security fixes.

* gnu/packages/tls.scm (gnutls): Update to 3.7.2.  Remove trailing #t.
[source]: Remove the gnutls-CVE-2021-20231.patch and
gnutls-CVE-2021-20232.patch patches, now incorporated in the source.
* gnu/packages/patches/gnutls-CVE-2021-20231.patch: Delete file.
* gnu/packages/patches/gnutls-CVE-2021-20232.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): De-register them.
2021-06-06 00:50:16 -04:00
Marius Bakke 7747df1bc2
gnu: TeX Live: Update to 2020.0.
* guix/build-system/texlive.scm (%texlive-tag): Set to 2020.0.
(%texlive-revision): Set to 54632.
* gnu/packages/tex.scm (texlive-extra-src, texlive-texmf-src, texlive-bin,
texlive-texmf, texlive): Update to 20200406.
(texlive-bin)[source](patches): Remove.
[arguments]: Adjust poppler compatibility phase for new upstream patches.
* gnu/packages/tex.scm (hyph-utf8-scripts, texlive-docstrip, texlive-unicode-data
texlive-hyphen-base, texlive-dvips, texlive-metafont-base, texlive-fontinst,
texlive-fontname, texlive-tex-plain, texlive-hyphen-bulgarian, texlive-hyphen-chinese,
texlive-hyphen-hungarian, texlive-hyphen-latin, texlive-hyphen-sanskrit,
texlive-hyphen-spanish, texlive-hyph-utf8, texlive-kpathsea,
texlive-latexconfig, texlive-latex-base, texlive-union,
texlive-latex-filecontents, texlive-latex-fancyvrb, texlive-graphics-def,
texlive-latex-graphics, texlive-latex-oberdiek, texlive-latex-tools,
texlive-latex-l3kernel, texlive-latex-l3packages, texlive-latex-fontspec,
texlive-latex-amsmath, texlive-latex-babel, texlive-latex-draftwatermark,
texlive-etoolbox, texlive-latex-geometry, texlive-latex-polyglossia,
texlive-latex-supertabular, texlive-tex-texinfo, texlive-latex-appendix,
texlive-latex-colortbl, texlive-latex-listings, texlive-inconsolata,
texlive-latex-enumitem, texlive-latex-multirow, texlive-latex-overpic,
texlive-latex-parskip, texlive-latex-pdfpages, texlive-libertine,
texlive-latex-titlesec, texlive-metapost, texlive-latex-acmart,
texlive-latex-wasysym, texlive-latex-preview, texlive-latex-acronym,
texlive-pdftex, texlive-latex-media9, texlive-latex-ocgx2, texlive-latex-ms,
texlive-generic-ulem, texlive-latex-pgf, texlive-latex-koma-script,
texlive-generic-listofitems, texlive-bibtex, texlive-context-base,
texlive-beamer, texlive-pstricks, texlive-marginnote, texlive-iftex,
texlive-tools, texlive-siunitx, texlive-booktabs, texlive-csquotes,
texlive-biblatex, texlive-microtype, texlive-caption, texlive-ydoc,
texlive-courier, texlive-hyperref, texlive-fontspec, texlive-l3build,
texlive-luaotfload, texlive-babel, texlive-tipa, texlive-jknappen,
texlive-wasy, texlive-context, texlive-cabin, texlive-fourier,
texlive-mweights, texlive-newtx, texlive-xcharter, texlive-tcolorbox): Update
hashes.
(texlive-hyphen-bulgarian): Don't include removed files.
(texlive-hyphen-hungarian, texlive-hyphen-sanskrit): Adjust for directory
rename.
(texlive-hyphen-chinese, texlive-hyphen-latin): Add more files.
(texlive-hyphen-macedonian): New public variable.
(texlive-metafont-base)[source]: Switch to SVN-MULTI-FETCH.
[arguments]: Adjust for extra source files.
(texlive-latex-base)[arguments]: Disable more formats.
[propagated-inputs]: Add TEXLIVE-HYPHEN-MACEDONIAN.
(texlive-fontinst): Don't include "scripts/texlive/fontinst.sh".
(texlive-generic-iftex): New public variable.
(texlive-iftex, texlive-generic-ifxetex): Deprecate in favor of
TEXLIVE-GENERIC-IFTEX.
(texlive-latex-oberdiek)[propagated-inputs]: Change from
TEXLIVE-GENERIC-IFXETEX to TEXLIVE-GENERIC-IFTEX.
(texlive-latex-xkeyval)[native-inputs]: Likewise.
(texlive-default-updmap.cfg): Remove variable.
* gnu/packages/patches/texlive-bin-poppler-0.83.patch,
gnu/packages/patches/texlive-bin-poppler-0.86.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-06-06 00:12:50 +02:00
Tobias Geerinckx-Rice bdd2970c08
gnu: wgetpaste: Update to 2.32.
* gnu/packages/wget.scm (wgetpaste): Update to 2.32.
[source]: Remove patch.
* gnu/packages/patches/wgetpaste-update-bpaste.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-06-05 19:14:15 +02:00
Carl Dong 20d9535e1b
gnu: nsis: Respect SOURCE-DATE-EPOCH for reproducibility
* gnu/packages/patches/nsis-source-date-epoch.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/installers.scm (make-nsis)[source]: Apply it.
2021-06-05 11:21:11 -04:00
Tobias Geerinckx-Rice e348436589
gnu: amule: Update to 2.3.3.
* gnu/packages/networking.scm (amule): Update to 2.3.3.
[source]: Remove patch.
* gnu/packages/patches/amule-crypto-6.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-06-03 18:23:39 +02:00
Efraim Flashner 0f6902ea79
gnu: julia-jllwrappers: Move to (gnu packages julia-jll).
* gnu/packages/julia-xyz.scm (julia-jlwrappers): Move to ...
* gnu/packages/julia-jll.scm: ... here.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register julia-jll.scm
2021-05-30 12:55:48 +03:00
Arun Isaac 395e20ed08
gnu: Register gnu/services/ci.scm and gnu/tests/ci.scm.
This is a follow-up to commit eda4bb4f16.

* gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/services/ci.scm and
gnu/tests/ci.scm.
2021-05-29 23:47:35 +05:30
Ricardo Wurmus e3cde9aaf8
gnu: Add mosaicatcher.
* gnu/packages/patches/mosaicatcher-unbundle-htslib.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/bioinformatics.scm (mosaicatcher): New variable.
2021-05-29 07:26:15 +02:00
Tobias Geerinckx-Rice 32acea79fa
gnu: lksctp-tools: Update to 1.0.19.
* gnu/packages/networking.scm (lksctp-tools): Update to 1.0.19.
[source]: Remove patch.
* gnu/packages/patches/lksctp-tools-1.0.18-fix-header-file-name.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-27 18:20:36 +02:00
Efraim Flashner 36a90d0637
gnu: minimap2: Update to 2.18.
* gnu/packages/bioinformatics.scm (minimap2): Update to 2.18.
[source]: Remove patch.
* gnu/packages/patches/minimap2-aarch64-support.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-26 15:22:10 +03:00
Alexandr Vityazev 3c52c96ca2
gnu: Remove unnecessary patches for emacs-geiser.
* gnu/packages/patches/emacs-geiser-autoload-activate-implementation.patch:
* gnu/packages/patches/emacs-geiser-guile-auto-activate.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Apply file removal.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-05-25 11:25:00 +02:00
Efraim Flashner 62282ff40b
gnu: binutils: Fix bug in test suite in libiberty.
* gnu/packages/base.scm (binutils)[source]: Add patch.
* gnu/packages/patches/binutils-libiberty-endianness-bug.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-05-23 22:23:34 +03:00
Marius Bakke 0de7945dc4
gnu: python-pyflakes: Remove obsolete patch.
This patch was added on 'core-updates' in
43c889de85, but no longer necessary since the
update to 2.3.1 in 91741db539.

* gnu/packages/patches/python-pyflakes-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python-xyz.scm (python-pyflakes)[source](patches): Remove.
2021-05-22 20:03:24 +02:00
Marius Bakke 4ea6852c5f
Merge branch 'master' into core-updates 2021-05-22 17:21:57 +02:00
Marius Bakke d4ffa96302
gnu: autotrace: Prepare for GLib 2.68 and later.
* gnu/packages/patches/autotrace-glib-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/graphics.scm (autotrace)[source](patches): New field.
2021-05-22 17:14:17 +02:00
Marius Bakke 4250b256d7
gnu: doxygen: Update to 1.9.1.
* gnu/packages/patches/doxygen-1.8.17-runtests.patch,
gnu/packages/patches/doxygen-test.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/documentation.scm (doxygen): Update to 1.9.1.
[source](patches): Remove.
[home-page]: Use HTTPS.
[arguments]: Disable bibtex test with a phase instead of patch.
2021-05-22 17:08:14 +02:00
Marius Bakke 6daa0b5af3
gnu: Tcl/Tk: Update to 8.6.11.
* gnu/packages/patches/tcl-fix-cross-compilation.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/tcl.scm (tcl): Update to 8.6.11.
[source](patches): Remove.
[arguments]: Remove trailing #t's.
(tk): Update to 8.6.11.1.
[arguments]: Remove trailing #t's and reindent.
2021-05-22 17:08:14 +02:00
Marius Bakke b08d989045
gnu: boost: Update to 1.76.0.
* gnu/packages/patches/boost-fix-transitive-linking.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/boost.scm (boost): Update to 1.76.0.
[source](patches): Remove.
2021-05-22 17:08:14 +02:00
Marius Bakke f20de6161b
gnu: ATLAS: Fix build with GCC 10.
* gnu/packages/patches/atlas-gfortran-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/maths.scm (atlas)[source](patches): New field.
2021-05-22 17:08:13 +02:00
Marius Bakke d58e2f2723
gnu: libblockdev: Prepare for GLib 2.58.
* gnu/packages/patches/libblockdev-glib-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/disk.scm (libblockdev)[source](patches): New field.
2021-05-22 16:04:59 +02:00
Marius Bakke 404feffa30
gnu: ucx: Restore (and adapt) ioctl fallback patch.
This is a followup to 4ebd4a58ce which
removed the patch, but it was still necessary for some dependents.

* gnu/packages/patches/ucx-tcp-iface-ioctl.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/fabric-management.scm (ucx)[source](patches): New field.
2021-05-22 16:04:59 +02:00
Eric Bavier a1a7a33b17
gnu: pinball: Update to 3.1.20201218.
* gnu/packages/games.scm (pinball): Update to 3.1.20201218.
[source]: Tarballs no longer published on sourceforge, so use git-fetch.
[native-inputs]: New field for bootstrapping inputs.
[inputs]: Add libltdl.
[arguments]: Add custom 'bootstrap' phase.
* gnu/packages/patches/pinball-system-ltdl.patch: Adjust to latest source.
* gnu/packages/patches/pinball-const-fix.patch,
gnu/packages/patches/pinball-cstddef.patch,
gnu/packages/patches/pinball-missing-separators.patch,
gnu/packages/patches/pinball-src-deps.patch: Delete upstreamed patches.
* gnu/local.mk (dist_patch_DATA): Remove them.
2021-05-21 22:37:54 -05:00
Ludovic Courtès 0fb80f349d
gnu: guile-ssh: Fix test failure due to Guile 3.0.7's 'read-error'.
Reported by Marius Bakke.

* gnu/packages/patches/guile-ssh-read-error.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (guile-ssh)[source]: Use it.
(guile2.0-ssh)[source]: New field.
(guile2.2-ssh)[source]: New field.
2021-05-19 17:45:32 +02:00
David Larsson b58efbc661
gnu: Add libxml2-xpath0.
* gnu/packages/patches/libxml2-xpath0-Add-option-xpath0.patch: New file...
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/xml.scm (libxml2-xpath0): New variable.

Signed-off-by: Marius Bakke <marius@gnu.org>
2021-05-18 22:23:49 +02:00
Marius Bakke 4ebd4a58ce
gnu: ucx: Update to 1.9.0.
* gnu/packages/patches/ucx-tcp-iface-ioctl.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/fabric-management.scm (ucx): Update to 1.9.0.
[source](patches): Remove.
2021-05-18 22:23:48 +02:00
Tobias Geerinckx-Rice 8d5986a503
gnu: rxvt-unicode: Update to 9.26.
* gnu/packages/xdisorg.scm (rxvt-unicode): Update to 9.26.
[source]: Remove upstreamed patch.
* gnu/packages/patches/rxvt-unicode-escape-sequences.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-18 16:37:20 +02:00
Maxim Cournoyer 0ac95b4490
gnu: disarchive: Fix build when cross-compiling.
This follows commit 0b1f70d1a7, which inadvertently broke the build of Guix
for i586-pc-gnu (Hurd).

* gnu/packages/patches/disarchive-cross-compilation.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/backup.scm (disarchive)[source]: Apply it.
[phases]{delete-configure}: New phase.
[native-inputs]: Add guile-3.0 and guile-gcrypt.
2021-05-17 23:27:40 -04:00
Xinglu Chen ae0882bbd6
gnu: mercurial: Patch to make it read HGEXTENSIONPATH.
This will make Mercurial be able to find third-party extensions installed with
Guix, without having to set PYTHONPATH.

* gnu/packages/patches/mercurial-hg-extension-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register the patch.
* gnu/packages/version-control.scm (mercurial)[origin](patches): Apply the
patch.
[native-search-paths]: Add HGEXTENSIONPATH.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-16 23:28:11 +02:00
Leo Famulari 7c4c781aa4
gnu: Graphviz: Fix CVE-2020-18032.
* gnu/packages/patches/graphviz-CVE-2020-18032.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/graphviz.scm (graphviz)[replacement]: New field.
(graphviz/fixed): New variable.
2021-05-15 17:04:01 -04:00
Ludovic Courtès 25487c3fe6
Merge branch 'master' into core-updates 2021-05-15 22:55:24 +02:00
Marius Bakke 03b6cfa0c2
gnu: freeglut: Fix build with GCC 10.
* gnu/packages/patches/freeglut-gcc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/gl.scm (freeglut)[source](patches): New field.
2021-05-13 17:03:47 +02:00
Tobias Geerinckx-Rice 0cbc8357b3
gnu: hplip: Update to 3.21.4.
* gnu/packages/cups.scm (hplip): Update to 3.21.4.
[source]: Remove fussy patch.  Replace it with an short snippet
substitution and...
[arguments]: ...the new "--disable-imageProcessor-build" configure flag.
* gnu/packages/patches/hplip-remove-imageprocessor.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-13 16:50:49 +02:00
Tobias Geerinckx-Rice bd1c5fe46b
gnu: snappy: Update to 1.1.9.
* gnu/packages/compression.scm (snappy): Update to 1.1.9.
[source]: Add another patch.
[arguments]: Add new #:configure-flags and an
'unpack-third_party-subprojects phase.
[native-inputs]: Add the sources for benchmark and googletests.
* gnu/packages/patches/snappy-add-inline-for-GCC.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-05-13 00:32:21 +02:00
Raghav Gururajan 8f9fdd31bd
gnu: Add giara.
* gnu/packages/syndication.scm (giara): New variable.
* gnu/packages/patches/giara-fix-login.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-05-11 18:07:09 -04:00
Marius Bakke 23666a9b62
gnu: ghostscript: Update to 9.54.0.
* gnu/packages/patches/ghostscript-freetype-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ghostscript.scm (ghostscript): Update to 9.54.0.
[source](patches): Remove obsolete patch.
2021-05-09 23:43:32 +02:00
Marius Bakke 1539af46d0
gnu: CMake: Update to 3.20.2.
* gnu/packages/cmake.scm (%common-disabled-tests): Don't disable BootstrapTest.
(cmake-bootstrap): Update to 3.20.2.
[source](modules, snippet): Move from here ...
(cmake-minimal)[source]: ... to here.
* gnu/packages/patches/mariadb-cmake-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/databases.scm (mariadb)[source](patches): Add it.
2021-05-09 23:43:32 +02:00
Marius Bakke 0689e1abed
gnu: mit-krb5: Update to 1.19.1.
* gnu/packages/patches/mit-krb5-hurd.patch: Adjust for 1.19.1.
* gnu/packages/patches/mit-krb5-qualify-short-hostnames.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/kerberos.scm (mit-krb5): Update to 1.19.1.
[source](patches): Remove obsolete patch.
[arguments]: Remove trailing #t's and one obsolete subtitution.
2021-05-09 23:43:31 +02:00
Marius Bakke 3ae9377bdc
gnu: Remove obsolete patches.
These patches were pulled in via merges from 'master', but have no use on
'core-updates'.

* gnu/packages/patches/python-3.8-CVE-2021-3177.patch,
gnu/packages/patches/python-3.9-fix-tests.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2021-05-09 21:38:34 +02:00
Marius Bakke f034264204
Merge branch 'master' into core-updates
Conflicts:
	gnu/local.mk
	gnu/packages/bioinformatics.scm
	gnu/packages/django.scm
	gnu/packages/gtk.scm
	gnu/packages/llvm.scm
	gnu/packages/python-web.scm
	gnu/packages/python.scm
	gnu/packages/tex.scm
	guix/build-system/asdf.scm
	guix/build/emacs-build-system.scm
	guix/profiles.scm
2021-05-09 21:29:46 +02:00
Leo Famulari 0f2b5f7f73
gnu: ExifTool: Fix CVE-2021-22204
* gnu/packages/patches/perl-image-exiftool-CVE-2021-22204.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/photo.scm (perl-image-exiftool)[source]: Use it.
2021-05-09 10:42:18 -04:00
Mike Gerwitz f30e8f2909
gnu: Add tla2tools.
This introduces tla2tools.jar, which contains the TLA+ model checker
and simulator (TLC); a TLA+ REPL; a semantic analyzer (SANY); the TLATeX
typesetting system; PlusCal translator; and more.  I have added five
wrapper scripts for convenience, rather than invoking `java' manually.
The wrapper scripts are not comprehensive; users who are familiar with
tla2tools.jar, or have read the book Specifying Systems, may still
invoke the commands in the traditional way.

The minimum JDK version is 11.  I chose to stick with that rather than
bumping it to 14 (which is the largest version currently in Guix)
because each OpenJDK version in Guix depends on the version before it,
and so it needlessly results in many 100s of MiB of unnecessary
dependencies.

Note that this is _not_ the TLA+ Toolbox, which is the GUI commonly used
with TLA+.

* gnu/packages/java.scm (tla2tools): New variable.
* gnu/packages/patches/tla2tools-build-xml.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-05 16:56:46 +02:00
Philip McGrath cd9454f6ed
gnu: racket: Remove obsolete patch.
* gnu/packages/racket.scm (racket)[source](patches): Remove
"racket-store-checksum-override.patch", which is no longer needed since
we stopped injecting store paths into Racket files in commit 834aa48:
see <https://issues.guix.gnu.org/47180>.
* gnu/packages/patches/racket-store-checksum-override.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-05 16:56:44 +02:00
Philip McGrath 3df04eb09f
gnu: racket: Move to (gnu packages racket).
* gnu/packages/scheme.scm (racket,racket-minimal): Move to ...
* gnu/packages/racket.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/racket.scm (racket)[synopsis]: Tweak.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-05 16:56:44 +02:00
Tobias Geerinckx-Rice 06cf2fc01f
gnu: busybox: Update to 1.33.1.
* gnu/packages/busybox.scm (busybox): Update to 1.33.1.
[source]: Remove upstreamed patch.
* gnu/packages/patches/busybox-CVE-2021-28831.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-04 15:56:27 +02:00
Vagrant Cascadian 3a851d4557
gnu: u-boot: Patch to fix boot regressions for some platforms.
The previous workaround stopped the preboot phase from loading USB
support, which makes it impossible to use a USB keyboard to select a
generation from the boot menu without using a serial console.

* gnu/packages/patches/u-boot-rockchip-inno-usb.patch: New File.
* gnu/local.mk (dist_patch_DATA): Add patch.
* gnu/packages/bootloaders.scm (%u-boot-rockchip-inno-usb-patch): New variable.
  (u-boot)[source]: Add patch.
  (u-boot-rockpro64-rk3399, u-boot-pinebook-pro-rk3399): Remove obsolete phase.
2021-05-01 14:12:08 -07:00
Morgan Smith 7141b010ee
gnu: Add emacs-geiser-guile.
* gnu/packages/patches/emacs-geiser-guile-auto-activate.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it here.
* gnu/packages/emacs-xyz.scm (emacs-geiser-guile): New variable.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-05-01 15:56:41 +02:00
Morgan Smith c1a78a1081
gnu: emacs-geiser: Update to 0.13.
* gnu/packages/patches/emacs-geiser-autoload-activate-implementation.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it here.
* gnu/packages/emacs-xyz.scm (emacs-geiser): Update to 0.13.
[source]: Change upstream URL.
[build-system]: Change to emacs-build-system.
[arguments]: Adjust accordingly.
[native-inputs]: Remove emacs, autoconf, and automake.
[description]: State that other packages are needed for geiser to be useful.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-05-01 15:56:41 +02:00
Vagrant Cascadian e7fbf10066
gnu: linux-libre-arm64-generic: Add eDP panel, battery and audio
support for Pinebook Pro.

* gnu/packages/linux.scm (linux-libre-5.11-source): Add Pinebook Pro
  lcd patch.
  (linux-libre-arm64-generic): Enable audio and battery modules for
  Pinebook Pro.
* gnu/packages/patches/linux-libre-arm64-generic-pinebook-lcd.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.
2021-04-28 16:56:35 -07:00
Marius Bakke 8dcbd8a374
gnu: ungoogled-chromium: Update to 90.0.4430.93.
* gnu/packages/patches/ungoogled-chromium-system-nspr.patch,
gnu/packages/patches/ungoogled-chromium-system-opus.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 90.
(debian-patch): Make REVISION optional, default to %DEBIAN-REVISION.
(%chromium-version): New variable.
(%ungoogled-revision): Set to 90.0.4430.85-1-11-g3184907.
(%debian-revision): Set to debian/90.0.4430.85-1.
(%debian-patches): Add more patches; update hashes.
(%ungoogled-origin): Update hash.
(%guix-patches): Remove obsolete patches.
(libvpx/chromium): Update to 1.9.0-147-g61edec1ef.
(ungoogled-chromium)[version]: Base on %CHROMIUM-REVISION and the last
component of %UNGOOGLED-REVISION, a 'git describe --long' style ID.
[arguments]: Add build_with_flite_lib in #:configure-flags.  Add openjpeg
substitution in #:phases.
2021-04-28 17:59:32 +02:00
Marius Bakke 8fa86141b7
gnu: LLVM, Clang: Add 12.0.0.
* gnu/packages/patches/clang-12-tools-extra-directory.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/llvm.scm (llvm-12, clang-runtime-12, clang-12,
clang-toolchain-12): New variables.
(llvm-11): Inherit from LLVM-12.
2021-04-28 17:59:32 +02:00
Leo Famulari 32db6f5044
gnu: gst-plugins-ugly: Fix some out-of-bounds reads.
* gnu/packages/patches/gst-plugins-ugly-fix-out-of-bound-reads.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gstreamer.scm (gst-plugins-ugly)[source]: Use it.
2021-04-27 01:58:56 -04:00
Leo Famulari 5a918564e1
gnu: gst-plugins-base: Fix an invalid read when parsing ID3v2 tags.
* gnu/packages/patches/gst-plugins-base-fix-id3v2-invalid-read.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gstreamer.scm (gst-plugins-base)[source]: Use it.
2021-04-27 01:58:56 -04:00
Leo Famulari 163693f8e9
gnu: gst-plugins-bad: Fix an overflow when processing video files.
* gnu/packages/patches/gst-plugins-bad-fix-overflow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gstreamer.scm (gst-plugins-bad)[source]: Use it.
2021-04-27 01:58:55 -04:00
Leo Famulari 46a65b5a3d
gnu: gst-libav: Fix a stack corruption bug.
* gnu/packages/patches/gst-libav-64channels-stack-corruption.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gstreamer.scm (gst-libav)[source]: Use it.
2021-04-27 01:58:55 -04:00
Leo Famulari c48b8fed25
gnu: gst-plugins-good: Fix CVE-2021-3497 and CVE-2021-3498.
* gnu/packages/patches/gst-plugins-good-CVE-2021-3497.patch,
gnu/packages/patches/gst-plugins-good-CVE-2021-3498.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gstreamer.scm (gst-plugins-good)[source]: Use them.
2021-04-27 01:58:55 -04:00
Leo Famulari 0cb4ef1c7f
gnu: GIMP: Update to 2.10.24.
* gnu/packages/gimp.scm (gimp): Update to 2.10.24.
[source]: Remove obsolete patch 'gimp-make-gegl-introspect-optional.patch'.
* gnu/packages/patches/gimp-make-gegl-introspect-optional.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-04-27 01:07:54 -04:00
Vinicius Monego f76ffea242
gnu: Add python-orange-canvas-core.
* gnu/packages/orange.scm: New file.
* gnu/packages/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-04-25 14:49:57 -04:00
宋文武 2ab4f4c950
gnu: cairo: Reintroduce security patches [security fixes].
Two patches were accidentally removed in commit
f94cdc86f6.

* gnu/packages/patches/cairo-CVE-2018-19876.patch,
gnu/packages/patches/cairo-CVE-2020-35492.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gtk.scm (cairo)[patches]: Apply them.
2021-04-23 18:27:26 +08:00
Efraim Flashner a24562af52
gnu: glib: Disable failing test.
* gnu/packages/glib.scm (glib)[source]: Add patch.
[arguments]: Remove custom 'increase-test-timeout phase.
* gnu/packages/patches/glib-skip-failing-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-04-22 11:08:05 +03:00
Efraim Flashner fcc39864db
Merge remote-tracking branch 'origin/master' into core-updates
Conflicts:
	gnu/local.mk
	gnu/packages/boost.scm
	gnu/packages/chez.scm
	gnu/packages/compression.scm
	gnu/packages/crates-io.scm
	gnu/packages/docbook.scm
	gnu/packages/engineering.scm
	gnu/packages/gcc.scm
	gnu/packages/gl.scm
	gnu/packages/gtk.scm
	gnu/packages/nettle.scm
	gnu/packages/python-check.scm
	gnu/packages/python-xyz.scm
	gnu/packages/radio.scm
	gnu/packages/rust.scm
	gnu/packages/sqlite.scm
	guix/build-system/node.scm
2021-04-16 14:39:48 +03:00
Philip McGrath 834aa48504
gnu: racket: Don't inject store paths into Racket files.
Apparently, during grafting, Guix can somehow mangle compiled
Racket CS files (.zo) such that Racket will refuse to load them.
(Maybe it has something to do with compression?)
So, we stop patching Racket sources with absolute paths to store
files (i.e. for foreign libraries to dlopen).
Instead, we put them in a data file that doesn't get compiled or,
in one case, embed it in C.

Fixes https://issues.guix.gnu.org/47064

* gnu/packages/patches/racket-sh-via-rktio.patch: New file.
Adds a special case at the C level, controlled by a preprocessor macro,
to handle attempts to execute "/bin/sh".
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/scheme.scm (racket)[source](patches): Apply it.
(racket)[arguments](#:configure-flags): Add the CPP flag to enable it.
(racket)[arguments](#:modules): Use srfi-1.
(racket)[arguments](#:phases): Remove 'patch-/bin/sh and 'pre-configure.
Change 'pre-configure-minimal to just change directory.
Add 'patch-config.rktd-lib-search-dirs after 'build and before 'install
to configure Racket's "lib-search-dirs".
(racket, racket-minimal)[inputs]: Add bash-minimal as an explicit input.
(racket-minimal)[source]: Adjust to inherit patches from racket.
(racket-minimal)[arguments]: Inherit from racket: changes no longer needed.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-04-12 18:42:22 +02:00
Hartmut Goebel 3281ba6eae
gnu: lksctp-tools: Fix build of include file.
* gnu/packages/patches/lksctp-tools-1.0.18-fix-header-file-name.patch:
  New file.
* gnu/local.mk[patches]: Add it.
* gnu/packages/networking.scm(/lksctp-tools)[source]: Use this patch.
2021-04-11 17:02:30 +02:00
Brendan Tildesley 586f017d98
gnu: python-pyqt: Fix build for new python-sip.
* gnu/packages/qt.scm (python-pyqt)
[source]: Remove pyqt-public-sip.patch.
[propagated-inputs]: Add python-pyqt5-sip.
* gnu/packages/patches/pyqt-public-sip.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-04-09 16:09:24 -04:00
Ludovic Courtès 87961fc965
gnu: glibc: Update to 2.33.
* gnu/packages/base.scm (glibc): Update to 2.33.
[source]: Remove "glibc-hurd-signal-sa-siginfo.patch", now upstream.
* gnu/packages/patches/glibc-hurd-clock_gettime_monotonic.patch: Update.
* gnu/packages/patches/glibc-hurd-signal-sa-siginfo.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-04-09 14:19:34 +02:00
Brice Waegeneire 0d4ae86bc2
gnu: libvirt: Update to 7.2.0.
* gnu/packages/virtualization.scm (libvirt): Update to 7.2.0.
[arguemnts]: Switch to meson, only build system supported by upstream.
[inputs]: Add libssh2 and readline.
[native-inputs]: Add bash-completion, gettext, python-docutils and
rpcsvc-proto.
* gnu/packages/patches/libvirt-add-install-prefix.patch: New file...
* gnu/local.mk: ...add it.
* gnu/packages/patches/libvirt-create-machine-cgroup.patch: Delete file,
merged by upstream.

Tested-by: Pierre Langlois <pierre.langlois@gmx.com>
2021-04-05 18:26:37 +01:00
Philip McGrath e29b1fff1d
gnu: chez-scheme: simplify packaging
Take advantage of patches that have been accepted upstream.
These changes lay a foundation for reusing more of Chez's
build process for Racket.

* gnu/packages/patches/chez-scheme-build-util-paths-backport.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/chez.scm (chez-scheme)[source](patches): Use it.
[source](snippet): Remove bundled libraries here, not in configure phase.
[inputs]: Organize. Move "nanopass", "stex", and "xorg-rgb" to ...
[native-inputs]: ... this field.
[arguments]: Add (ice-9 ftw) to #:modules. Remove unneeded
'patch-processor-detection' phase. Add 'unpack-nanopass+stex' phase
(refactored from 'configure'). Simplify 'configure' phase by removing
patches that have been upstreamed. Add "--nogzip-man-pages" flag so we can
remove 'make-manpages-writable' phase. Stop ignoring #:configure-flags,
move "--threads" there, and remove unneeded workaround. Add 'prepare-stex'
phase (refactored from 'install-doc'). Use it to streamline 'install-doc'
phase, installing all of the right files into the right places.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-04-05 16:10:06 +02:00
Maxim Cournoyer 86c39376cc
gnu: runc: Update to 1.0.0-rc93.
* gnu/packages/virtualization.scm (runc): Update to 1.0.0-rc93.
[source]: Remove the patches field.
[phases]{unpack}: Remove override.
{build}: Add the man target.
{check}: Make conditional based on TESTS?.
{install}: Add the install-man target.
[native-inputs]: Add go-github-com-go-md2man.
[home-page]: Update.
* gnu/packages/patches/runc-CVE-2019-5736.patch: Delete file.
* gnu/local.mk: Un-register it.
2021-04-02 23:33:42 -04:00
Maxim Cournoyer 7bf82f5ede
gnu: containerd: Update to 1.4.4.
* gnu/packages/docker.scm (containerd): Update to 1.4.4.  Delete
trailing #t.
[arguments]: Set a MAKE-FLAGS binding.
[phases]{patch-paths}: Patch the reference to 'unpigz'.
{build, install}: Use the MAKE-FLAGS variable.
[inputs]: Add pigz.
* gnu/packages/patches/containerd-test-with-go1.13.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Un-register it.
2021-04-02 23:33:42 -04:00
Tobias Geerinckx-Rice 8d89d3c9bf
gnu: pidgin: Update to 2.14.2.
* gnu/packages/messaging.scm (pidgin): Update to 2.14.2.
[source]: Remove pidgin-vv-gst.patch.
* gnu/packages/patches/pidgin-vv-gst.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-04-02 23:25:18 +02:00
Léo Le Bouter f4dc8ac6df
gnu: curl: Update to 7.76.0 [security fixes].
Fixes CVE-2021-22876 and CVE-2021-22890.

* gnu/packages/curl.scm (curl/fixed): New variable.
(curl)[replacement]: New field.
* gnu/packages/patches/curl-7.76-use-ssl-cert-env.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-04-02 16:44:33 -04:00
Léo Le Bouter c18c8d3e9c
gnu: wpa-supplicant-minimal: Fix CVE-2021-30004.
* gnu/packages/patches/wpa-supplicant-CVE-2021-30004.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/admin.scm (wpa-supplicant-minimal): Apply patch.
2021-04-02 19:22:33 +02:00
Jelle Licht 31c4d89073
gnu: Add llhttp-bootstrap.
* gnu/packages/patches/llhttp-bootstrap-CVE-2020-8287.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/node.scm (llhttp-bootstrap): New variable.
2021-04-02 18:04:24 +02:00
Maxim Cournoyer 67a5e112b1
gnu: opendht: Update to 2.2.0rc4.
* gnu/packages/patches/opendht-fix-jami.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Un-register it.
* gnu/packages/networking.scm (opendht): Update to 2.2.0rc4.
[patches]: Remove field.
[inputs]: Use nettle-3.7.
[native-inputs]: Move restinio to...
[propagated-inputs]: ... here.
2021-04-02 07:41:15 -04:00
Pierre Langlois bd9e140856
Revert "gnu: libvirt: Update to 7.1.0."
The update causes virsh to fail <https://bugs.gnu.org/47541>.

This reverts commit 383b02a370.
2021-04-02 09:23:20 +01:00
Efraim Flashner b82cc0b90e
gnu: qemu-for-american-fuzzy-lop: Fix build.
* gnu/packages/debug.scm (qemu-for-american-fuzzy-lop)[source]: Add
patch.
* gnu/packages/patches/qemu-glibc-2.30.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-04-01 13:31:51 +03:00
Tobias Geerinckx-Rice 94c77c9a0f
gnu: gimp: Ship a copy of the gegl patch.
As Ludo' rightly points out, GitHub's patches are probably as stable
as their tarballs.

* gnu/packages/gimp.scm (gimp)[source]:
Use SEARCH-PATCHES instead of an origin.
* gnu/packages/patches/gimp-make-gegl-introspect-optional.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-04-01 00:49:28 +02:00
Pierre Langlois 383b02a370
gnu: libvirt: Update to 7.1.0.
* gnu/packages/virtualization.scm (libvirt): Update to 7.1.0.
[source]: Remove libvirt-create-machine-cgroup.patch, add
libvirt-do-not-create-var-dirs.patch.
[build-system]: Switch to meson-build-system.
[arguments]: Use meson-0.55.  Adapt #:configure-flags for meson, there is no
need for --docdir anymore.  Remove fix-BOURNE_SHELL-definition phase.  Add
fix-sysconfdir-and-localstatedir phase.  Adapt disable-broken-tests to meson.
[native-inputs]: Add python-docutils and rpcsvc-proto.
* gnu/packages/patches/libvirt-create-machine-cgroup.patch: Delete.
* gnu/packages/patches/libvirt-do-not-create-var-dirs.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add new patch, remove the other.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-31 15:36:48 +02:00
Léo Le Bouter 9feef62b73
gnu: zstd: Downgrade to 1.4.4 and make security graft saner.
* gnu/packages/patches/zstd-CVE-2021-24031_CVE-2021-24032.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/compression.scm (zstd-1.4.9): Remove.
(zstd/fixed): New variable. Apply patch.
(zstd)[replacement]: Graft with zstd/fixed.
2021-03-30 02:21:25 +02:00
Raghav Gururajan 48b2202789
gnu: linphoneqt: Update to 4.2.5 and rename to linphone-desktop.
Also enable the daemon and console interfaces.

* gnu/packages/linphone.scm (linphoneqt) [name]: Rename to linphone-desktop.
[source]: Switch to git repository.
[patches]: Remove linphoneqt-tabbutton.patch and add
linphone-desktop-without-sdk.patch.
[outputs]<debug>: New output.
[configure-flags]: Disable update checking and enable the daemon and console
interfaces.
[phases]<pre-configure>: New phase.
<fix-cmake-error, set-version-string>: Remove phases.
<extend-shared-resources>: Rename to...
<post-install>: ... this; adjust.
[native-inputs]: Add pkg-config.
[inputs]: Add belr and ortp.  Remove belle-sip.
[home-page]: Update home page.
[license]: Update to GPLv3+.
* gnu/packages/patches/linphoneqt-tabbutton.patch: Remove file.
linphone-desktop-without-sdk.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update.

Co-authored-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-29 01:17:14 -04:00
Raghav Gururajan 146a9403b3
gnu: mediastreamer2: Update to 4.4.34.
* gnu/packages/linphone.scm (mediastreamer2)[source]: Switch to git repository.
[version]: Update to 4.4.34.
[patches]: Remove field.
[configure-flags]: Remove the ENABLE_STRICT, ENABLE_BV16, CMAKE_C_FLAGS and
CMAKE_CXX_FLAGS flags.
[phases]{fix-version}: New phase.
{separate-outputs}: Modify.
[native-inputs]: Replace python with python-wrapper.
[home-page]: Update.
[license]: Upgrade to GPLv3+.
* gnu/packages/patches/mediastreamer2-srtp2.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-29 01:17:13 -04:00
Simon South 5d8c2c00d6
tests: Add Transmission Daemon system test.
* gnu/tests/file-sharing.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-28 22:31:00 +02:00
Léo Le Bouter b20b45c6ce
gnu: gd: Patch away recent pkg-config files change that breaks php build.
* gnu/packages/patches/gd-Revert-fix-303-gdlib.pc-use-Requires-instead-of-Libs.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gd.scm (gd): Apply patch.
2021-03-28 20:13:22 +02:00
Mark H Weaver 2d3d7faf0a
gnu: imagemagick: Add more upstream fixes.
* gnu/packages/patches/imagemagick-ReadDCMImage-fix.patch,
gnu/packages/patches/imagemagick-ReadDCMPixels-fix.patch,
gnu/packages/patches/imagemagick-WriteTHUMBNAILImage-fix.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/imagemagick.scm (source): Add patches.
2021-03-27 19:49:14 -04:00
Mark H Weaver bfc69d5e7c
gnu: imagemagick: Fix CVE-2020-27829.
* gnu/packages/patches/imagemagick-CVE-2020-27829.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/imagemagick.scm (source): Add patch.
2021-03-27 19:49:07 -04:00
Léo Le Bouter 53dd99bc0b
gnu: upx: Fix CVE-2021-20285.
* gnu/packages/patches/upx-CVE-2021-20285.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/compression.scm (upx): Apply patch.
2021-03-26 22:52:33 +01:00
Raghav Gururajan 298352a302
gnu: gdk-pixbuf: Add missing arguments.
* gnu/packages/patches/gdk-pixbuf-CVE-2020-29385.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Unregister it.
* gnu/packages/gtk.scm (gdk-pixbuf) [arguments]<#:glib-or-gtk?>: New argument.
[replacement]: Remove.
(gdk-pixbuf/fixed): Remove.

Signed-off-by: Léo Le Bouter <lle-bout@zaclys.net>
2021-03-26 15:43:37 -04:00
Raghav Gururajan f94cdc86f6
gnu: cairo: Make some cosmetic changes.
* gnu/packages/patches/cairo-CVE-2018-19876.patch,
gnu/packages/patches/cairo-CVE-2020-35492.patch: Remove patches.
* gnu/local.mk (dist_patch_DATA): Unregister them.
* gnu/packages/gtk.scm (cairo): Make some cosmetic changes.
[replacement]: Remove.
(cairo/fixed): Remove.

Signed-off-by: Léo Le Bouter <lle-bout@zaclys.net>
2021-03-26 15:27:20 -04:00
Léo Le Bouter 52c8d07a4f
gnu: mariadb: Fix CVE-2021-27928.
* gnu/packages/patches/mariadb-CVE-2021-27928.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/databases.scm (mariadb/fixed): New variable. Apply patch.
(mariadb)[replacement]: Graft.
2021-03-26 02:21:51 +01:00
Raghav Gururajan 8b8e611876
gnu: glib: Update to 2.68.0.
* gnu/packages/glib.scm (glib) [version]: Update to 2.68.0.
[patches]: Remove glib-tests-timer.patch.
[arguments]<#:phases>['patch-python-references]: New phase.
['pre-check]: New phase.
['move-bin]: New phase.
['patch-dbus-launch-path]: Remove phase.
['patch-gio-launch-desktop]: Remove phase.
['pre-build]: Remove phase.
['disable-failing-tests]: Modify phase.
['check]: Remove phase.
['move-executables]: Remove phase.
[native-inputs]: Add intltool, python, libxml2 and libxslt.
Remove dbus.
[inputs]: Add bash-completion, dbus and libelf.
[propagated-inputs]: Add libselinux.
* gnu/packages/patches/glib-tests-timer.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust.

Signed-off-by: Léo Le Bouter <lle-bout@zaclys.net>
2021-03-25 20:51:42 -04:00
Raghav Gururajan 993de472ed
gnu: glib: Make some cosmetic changes.
* gnu/packages/patches/glib-CVE-2021-27218.patch
gnu/packages/patches/glib-CVE-2021-27219-01.patch
gnu/packages/patches/glib-CVE-2021-27219-02.patch
gnu/packages/patches/glib-CVE-2021-27219-03.patch
gnu/packages/patches/glib-CVE-2021-27219-04.patch
gnu/packages/patches/glib-CVE-2021-27219-05.patch
gnu/packages/patches/glib-CVE-2021-27219-06.patch
gnu/packages/patches/glib-CVE-2021-27219-07.patch
gnu/packages/patches/glib-CVE-2021-27219-08.patch
gnu/packages/patches/glib-CVE-2021-27219-09.patch
gnu/packages/patches/glib-CVE-2021-27219-10.patch
gnu/packages/patches/glib-CVE-2021-27219-11.patch
gnu/packages/patches/glib-CVE-2021-27219-12.patch
gnu/packages/patches/glib-CVE-2021-27219-13.patch
gnu/packages/patches/glib-CVE-2021-27219-14.patch
gnu/packages/patches/glib-CVE-2021-27219-15.patch
gnu/packages/patches/glib-CVE-2021-27219-16.patch
gnu/packages/patches/glib-CVE-2021-27219-17.patch
gnu/packages/patches/glib-CVE-2021-27219-18.patch
gnu/packages/patches/glib-CVE-2021-28153.patch: Remove patches.
* gnu/local.mk (dist_patch_DATA): Unregister them.
* gnu/packages/glib.scm (glib): Make some cosmetic changes.
[replacement]: Remove.
(glib/fixed): Remove.

Signed-off-by: Léo Le Bouter <lle-bout@zaclys.net>
2021-03-25 20:51:42 -04:00
Efraim Flashner 2aab587f84
Merge remote-tracking branch 'origin/master' into core-updates 2021-03-24 20:50:44 +02:00
Leo Le Bouter 6e98e9ca92
gnu: glibc: Fix ldd path on powerpc*.
This should avoid some problems, such as "not a dynamic executable" errors.

* gnu/packages/patches/glibc-ldd-powerpc.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/base.scm: (glibc)[native-inputs]: Add it.
[arguments]: When building for powerpc* apply it.
* gnu/packages/commencement.scm (glibc-final-with-bootstrap-bash,
glibc-final)[native-inputs]: Add patch conditionally.

This patch has been adjusted to apply to master.

Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-23 23:19:55 -07:00
Mathieu Othacehe eee69da3a5
tests: Remove Cuirass tests.
Those tests don't make sense anymore as the Cuirass 1.0 version has removed
the possibility to execute a custom registration procedure.

* gnu/tests/cuirass.scm: Remove it.
* gnu/local.mk (GNU_SYSTEM_MODULES): Ditto.
2021-03-23 16:47:47 +01:00
Tobias Geerinckx-Rice 46cac065be
gnu: efibootmgr: Update to 17.
* gnu/packages/linux.scm (efibootmgr): Update to 17.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
Add a patch to build against efivar@37.
* gnu/packages/patches/efibootmgr-remove-extra-decl.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-03-23 14:20:06 +01:00
Tobias Geerinckx-Rice f119612d64
gnu: cgal: Update to 5.2.1.
* gnu/packages/graphics.scm (cgal): Update to 5.2.1.
[source]: Remove patch.
* gnu/packages/patches/cgal-security-pr-5371.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-03-23 14:20:05 +01:00
Efraim Flashner 18b740bc0c
gnu: lcms: Update to 2.12.
* gnu/packages/ghostscript.scm (lcms): Update to 2.12.
[source]: Remove patch.
[home-page]: Use https.
* gnu/packages/patches/lcms-CVE-2018-16435.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-03-20 22:16:31 +02:00
Greg Hogan 6457985e39
gnu: abseil-cpp: Patch sterror_test.
* gnu/packages/patches/abseil-cpp-fix-gtest.patch: Renamed file.
* gnu/packages/patches/abseil-cpp-fix-strerror_test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Rename / add files.
* gnu/packages/cpp.scm (abseil-cpp)[source]: Use files.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-19 22:32:40 +01:00
Greg Hogan c4d616f7c6
gnu: abseil-cpp: Update to 20200923.3.
* gnu/packages/cpp.scm (abseil-cpp): Update to 20200923.3.
[arguments]: Enable external googletest.
* gnu/packages/patches/abseil-cpp-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-19 22:17:03 +01:00
Léo Le Bouter 572528e7dd
gnu: busybox: Fix CVE-2021-28831.
* gnu/packages/patches/busybox-CVE-2021-28831.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/busybox.scm (busybox): Apply it.
2021-03-19 11:56:38 +01:00
Marius Bakke 1155a88308
gnu: ungoogled-chromium: Update to 89.0.4389.90-1.
* gnu/packages/patches/ungoogled-chromium-system-opus.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 89.
(%chromium-version): Remove variable.
(%ungoogled-revision): Set to 89.0.4389.90-1.
(%ungoogled-origin): Conditionally set file name based on commit/tag.
(%guix-patches): Add the new file.
(libvpx/chromium): Update to 1.9.0-104-gb5d77a48d.
(ungoogled-chromium)[version]: Use %UNGOOGLED-REVISION.
[source]: Update hash.
[arguments]: Adjust #:configure-flags for build system changes.  Don't build
with external WebRTC SSL library.  Remove obsolete substitution.
[inputs]: Remove OPENSSL.  Change from PIPEWIRE to PIPEWIRE-0.3.
2021-03-19 00:14:11 +01:00
Leo Prikler fef91c0cc8
gnu: Move lolcode to esolangs.
* gnu/packages/lolcode.scm (lci): Move from here...
* gnu/packages/esolangs.scm (lolcode-lci): ... to here.
* gnu/packages/lolcode.scm: Delete file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2021-03-17 14:21:29 +01:00
Kei Kebreau 109f58444b
gnu: mpg321: Fix CVE-2019-14247.
* gnu/packages/patches/mpg321-CVE-2019-14247.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/mp3.scm (mpg321)[source]: Apply it.

Signed-off-by: Léo Le Bouter <lle-bout@zaclys.net>
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-03-16 19:12:36 +01:00
Mark H Weaver d059485257
gnu: unzip: Remove redundant and unused "unzip-symlink.patch".
This is a followup to commit 31d289a475,
which added, but did not use, "unzip-symlink.patch", which is
redundant with the pre-existing "unzip-initialize-symlink-flag.patch".

* gnu/packages/patches/unzip-symlink.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-03-14 19:16:17 -04:00
Léo Le Bouter 703843922a
gun: unzip/fixed: Fix tests on 32-bit systems.
* gnu/packages/patches/unzip-32bit-zipbomb-fix.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/compression.scm (unzip/fixed): Apply patch.
2021-03-14 09:09:45 +01:00
Léo Le Bouter 31d289a475
gnu: unzip: Add patches from Fedora [security fixes].
Non-exhaustively fixes CVE-2016-9844, CVE-2018-1000035, CVE-2018-18384, and
CVE-2019-13232.

* gnu/packages/patches/unzip-COVSCAN-fix-unterminated-string.patch,
gnu/packages/patches/unzip-CVE-2016-9844.patch,
gnu/packages/patches/unzip-CVE-2018-1000035.patch,
gnu/packages/patches/unzip-CVE-2018-18384.patch,
gnu/packages/patches/unzip-case-insensitive.patch,
gnu/packages/patches/unzip-alt-iconv-utf8-print.patch,
gnu/packages/patches/unzip-alt-iconv-utf8.patch,
gnu/packages/patches/unzip-close.patch,
gnu/packages/patches/unzip-exec-shield.patch,
gnu/packages/patches/unzip-fix-recmatch.patch,
gnu/packages/patches/unzip-manpage-fix.patch,
gnu/packages/patches/unzip-overflow.patch,
gnu/packages/patches/unzip-symlink.patch,
gnu/packages/patches/unzip-timestamp.patch,
gnu/packages/patches/unzip-valgrind.patch,
gnu/packages/patches/unzip-x-option.patch,
gnu/packages/patches/unzip-zipbomb-manpage.patch,
gnu/packages/patches/unzip-zipbomb-part1.patch,
gnu/packages/patches/unzip-zipbomb-part2.patch,
gnu/packages/patches/unzip-zipbomb-part3.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/compression.scm (unzip/fixed): New variable. Apply patches.
(unzip)[replacement]: Graft.
2021-03-14 06:11:20 +01:00
Mark H Weaver 74e2c0e00f
gnu: gnutls: Fix CVE-2021-20231 and CVE-2021-20232.
* gnu/packages/patches/gnutls-CVE-2021-20231.patch,
gnu/packages/patches/gnutls-CVE-2021-20232.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/tls.scm (gnutls)[replacement]: New field.
(gnutls/fixed): New variable.
(guile2.2-gnutls): Use package/inherit.
2021-03-13 04:58:12 -05:00
Greg Hogan 8ea7b6f91e
gnu: Add aws-c-io.
* gnu/packages/c.scm (aws-c-io): New variable.
* gnu/packages/patches/aws-c-io-cmake-prefix.patch,
gnu/packages/patches/aws-c-io-disable-networking-tests.patch:
New files.
* gnu/local.mk (dist_patch_DATA): Add them.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-12 23:58:54 +01:00
Greg Hogan 748e2ec07a
gnu: Add aws-c-cal.
* gnu/packages/c.scm (aws-c-cal): New variable.
* gnu/packages/patches/aws-c-cal-cmake-prefix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-12 23:58:54 +01:00
Mark H Weaver 825cc7e0d4
gnu: gnome-shell: Fix CVE-2020-17489.
* gnu/packages/patches/gnome-shell-CVE-2020-17489.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (gnome-shell)[source]: Add patch.
2021-03-12 06:08:33 -05:00
Mark H Weaver bc16eacc99
gnu: cairo: Fix CVE-2018-19876 and CVE-2020-35492.
* gnu/packages/patches/cairo-CVE-2018-19876.patch,
gnu/packages/patches/cairo-CVE-2020-35492.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gtk.scm (cairo)[replacement]: New field.
(cairo/fixed): New variable.
(cairo-xcb): Use package/inherit.
2021-03-12 06:08:33 -05:00
Mark H Weaver 453e101fc3
gnu: gdk-pixbuf: Fix CVE-2020-29385.
* gnu/packages/patches/gdk-pixbuf-CVE-2020-29385.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gdk-pixbuf)[replacement]: New field.
(gdk-pixbuf/fixed): New variable.
(gdk-pixbuf+svg): Use package/inherit.
2021-03-12 06:08:32 -05:00
Mark H Weaver 5a06b83fc9
gnu: glib: Fix CVE-2021-28153.
* gnu/packages/patches/glib-CVE-2021-28153.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/glib.scm (glib/fixed): Add the new patch.
2021-03-12 01:44:26 -05:00
Efraim Flashner 2f9132e2e0
Revert "Revert "gnu: mongodb: Update to 3.4.24 [security fixes].""
This reverts commit feff80cec3.

I was mistaken, there are still branches of mongodb which are still
licensed under the AGPL3
2021-03-11 23:23:00 +02:00
Efraim Flashner feff80cec3
Revert "gnu: mongodb: Update to 3.4.24 [security fixes]."
This reverts commit e5f89570c1.

After this version mongodb switched to the Server Side Public License
(https://www.mongodb.com/licensing/server-side-public-license) which is
not a FOSS license.
2021-03-11 15:13:55 +02:00
Mark H Weaver 21b3b75515
gnu: glib: Fix CVE-2021-27218 and CVE-2021-27219.
* gnu/packages/patches/glib-CVE-2021-27218.patch,
gnu/packages/patches/glib-CVE-2021-27219-01.patch,
gnu/packages/patches/glib-CVE-2021-27219-02.patch,
gnu/packages/patches/glib-CVE-2021-27219-03.patch,
gnu/packages/patches/glib-CVE-2021-27219-04.patch,
gnu/packages/patches/glib-CVE-2021-27219-05.patch,
gnu/packages/patches/glib-CVE-2021-27219-06.patch,
gnu/packages/patches/glib-CVE-2021-27219-07.patch,
gnu/packages/patches/glib-CVE-2021-27219-08.patch,
gnu/packages/patches/glib-CVE-2021-27219-09.patch,
gnu/packages/patches/glib-CVE-2021-27219-10.patch,
gnu/packages/patches/glib-CVE-2021-27219-11.patch,
gnu/packages/patches/glib-CVE-2021-27219-12.patch,
gnu/packages/patches/glib-CVE-2021-27219-13.patch,
gnu/packages/patches/glib-CVE-2021-27219-14.patch,
gnu/packages/patches/glib-CVE-2021-27219-15.patch,
gnu/packages/patches/glib-CVE-2021-27219-16.patch,
gnu/packages/patches/glib-CVE-2021-27219-17.patch,
gnu/packages/patches/glib-CVE-2021-27219-18.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/glib.scm (glib)[replacement]: New field.
(glib/fixed): New variable.
2021-03-11 06:21:13 -05:00
Léo Le Bouter 1acfda2f94
gnu: geary: Fix CVE-2020-24661.
* gnu/packages/patches/geary-CVE-2020-24661.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnome.scm (geary): Apply it.
2021-03-11 02:32:19 +01:00
Léo Le Bouter e940f6d801
gnu: libcroco: Fix CVE-2020-12825.
* gnu/packages/patches/libcroco-CVE-2020-12825.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnome.scm (libcroco/fixed): New variable. Apply patch.
(libcroco)[replacement]: Graft.
2021-03-11 02:02:24 +01:00
Léo Le Bouter a2943e36c7
gnu: evolution: Fix CVE-2020-11879.
* gnu/packages/patches/evolution-CVE-2020-11879.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnome.scm (evolution): Apply it.
2021-03-11 01:19:40 +01:00
Léo Le Bouter c35f87bb1a
gnu: evolution-data-server: Fix CVE-2020-14928 and CVE-2020-16117.
* gnu/packages/patches/evolution-data-server-CVE-2020-14928.patch,
gnu/packages/patches/evolution-data-server-CVE-2020-16117.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/gnome.scm (evolution-data-server): Apply them.
2021-03-11 01:19:40 +01:00
Léo Le Bouter e5f89570c1
gnu: mongodb: Update to 3.4.24 [security fixes].
* gnu/packages/patches/mongodb-support-unknown-linux-distributions.patch:
Remove patch.
* gnu/local.mk (dist_patch_DATA): Ditto.
* gnu/packages/databases.scm (mongodb): Update to 3.4.24.
[source]: Drop patch. Update third_party libs folder names.
2021-03-10 13:03:12 +01:00
Lars-Dominik Braun 38b0c64d7b
gnu: python-shouldbe: Remove.
Unmaintained upstream and its only dependent (python-gssapi) dropped it.

* gnu/packages/patches/python-shouldbe-0.1.2-cpy3.8.patch: Remove.
* gnu/local.mk: Drop patch file.
* gnu/packages/python-xyz.scm (python-shouldbe): Remove.
2021-03-10 12:01:41 +01:00
Léo Le Bouter 70128b8afa
gnu: cyrus-sasl: Fix CVE-2019-19906.
* gnu/packages/patches/cyrus-sasl-CVE-2019-19906.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/cyrus-sasl.scm (cyrus-sasl/fixed): New variable. Apply patch.
(cyrus-sasl)[replacement]: Graft.
2021-03-10 11:51:09 +01:00
Léo Le Bouter b66fc0a64b
gnu: bsdiff: Fix CVE-2014-9862.
* gnu/packages/patches/bsdiff-CVE-2014-9862.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/compression.scm (bsdiff): Apply it.
2021-03-10 09:54:27 +01:00
Felix Gruber 251b0f7a6f
gnu: vtk: Fix build failure.
* gnu/packages/image-processing.scm (vtk): Fix build failure.
[source]: Add patch to fix build failure with recent versions of freetype.
* gnu/packages/patches/vtk-fix-freetypetools-build-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-09 22:32:41 +02:00
Efraim Flashner fe830ffd8d
gnu: libcaca: Patch for CVE-2021-3410.
* gnu/packages/video.scm (libcaca)[source]: Add patches.
* gnu/packages/patches/libcaca-CVE-2021-3410-pt1.patch,
gnu/packages/patches/libcaca-CVE-2021-3410-pt2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2021-03-08 15:48:08 +02:00
Léo Le Bouter 090456dacb
gnu: ytnef: Fix CVE-2021-3403 and CVE-2021-3404.
* gnu/packages/patches/ytnef-CVE-2021-3403.patch,
gnu/packages/patches/ytnef-CVE-2021-3404.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/mail.scm (ytnef): Apply them.
2021-03-06 04:47:10 +01:00
Christopher Baines a8448da0f4
Merge branch 'master' into core-updates 2021-03-06 00:18:30 +00:00
Léo Le Bouter fc193b6518
gnu: cgal: Update to 5.2 [security fixes].
* gnu/packages/patches/cgal-security-pr-5371.patch: New patch. Downloaded from
<https://patch-diff.githubusercontent.com/raw/CGAL/cgal/pull/5371.patch>, with
hunks on files matching pattern "*Convex_decomposition_3*" removed because
they don't exist in cgal's released sources.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/graphics.scm (cgal): Update to 5.2.
[source]: Apply patch.
2021-03-05 23:51:57 +01:00
Kei Kebreau 6891f95739
gnu: mupdf: Fix CVE-2021-3407.
* gnu/packages/pdf.scm (mupdf)[source]: Add patch.
* gnu/packages/patches/mupdf-CVE-2021-3407.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-03-04 20:12:07 -05:00
Léo Le Bouter 759a526f5f
gnu: openssh: Update to 8.5p1.
* gnu/packages/patches/openssh-fix-ssh-copy-id.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Also unregister it.
* gnu/packages/ssh.scm (openssh): Update to 8.5p1.
2021-03-03 06:39:37 +01:00
Leo Famulari 3905580180
gnu: Python 2: Fix CVE-2021-3177.
* gnu/packages/patches/python-2.7-CVE-2021-3177.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-2.7)[replacement]: New field.
(python-2.7/fixed): New variable.
2021-03-02 16:55:06 -05:00
Tobias Geerinckx-Rice c48c69194f
gnu: python-matplotlib: Fix running under Wayland with GTK3.
* gnu/packages/python-xyz.scm (python-matplotlib)[source]: Add patch.
* gnu/packages/patches/python-matplotlib-run-under-wayland-gtk3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-03-02 18:31:42 +01:00
Léo Le Bouter 3505d86502
gnu: openscad: Update to 2021.01 [maybe fixes TALOS-2020-1222, TALOS-2020-1223].
TALOS-2020-1222 has yet to be disclosed and has no known CVE number.
TALOS-2020-1223 has CVE-2020-28599 assigned.

* gnu/packages/engineering.scm (openscad): Update to 2021.01.
[patches]: Remove. Boost 1.72 is supported now upstream.
[arguments]: In replacement 'check phase, disable some tests requiring
experimental "lazy-union" feature. Also disable PDF-related tests requiring
ghostscript and failing either way.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/openscad-parser-boost-1.72.patch: Ditto.
2021-03-01 03:01:41 +01:00
Léo Le Bouter e05c0b334d
gnu: qemu: Fix CVE-2021-20203.
* gnu/packages/patches/qemu-CVE-2021-20203.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/virtualization.scm (qemu): Apply it.
2021-02-28 04:40:05 +01:00
宋文武 9c30f26b8d
gnu: retroarch: Update to 1.9.0.
* gnu/packages/emulators.scm (retroarch): Update to 1.9.0.
[source]: Remove 'retroarch-disable-online-updater.patch' and snippet.
Add 'retroarch-LIBRETRO_DIRECTORY.patch'.
[native-search-paths]: New field.
* gnu/packages/patches/retroarch-disable-online-updater.patch: Remove file.
* gnu/packages/patches/retroarch-LIBRETRO_DIRECTORY: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-02-28 11:12:38 +08:00
Léo Le Bouter 83a614b6c3
gnu: wpa-supplicant, hostapd: Fix CVE-2021-27803.
See <https://w1.fi/security/2021-1/wpa_supplicant-p2p-provision-discovery-processing-vulnerability.txt>.

* gnu/packages/patches/wpa-supplicant-CVE-2021-27803.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/admin.scm (wpa-supplicant-minimal, hostapd): Apply it.
2021-02-28 03:03:39 +01:00
Greg Hogan 10b909a024
gnu: Python 3.9: Update to 3.9.2.
* gnu/packages/python.scm (python-3.9): Update to 3.9.2.
[source]: Remove obsolete patch.
* gnu/packages/patches/python-3.9-CVE-2021-3177.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-02-25 14:41:41 -05:00
Mathieu Othacehe b5586c666e
gnu: http-server: Fix build on i686-linux.
* gnu/packages/patches/http-parser-fix-assertion-on-armhf.patch: Remove it.
* gnu/local.mk (dist_patch_DATA): Update it.
* gnu/packages/web.scm (http-parser)[source]: Remove a test assertion failing
on i686-linux.
[arguments]: Remove the "assertion.patch" that is merged upstream.
[native-inputs]: Ditto.
[synopsis]: Wrap it.
2021-02-24 16:36:12 +01:00
Jelle Licht 66fa2d318a
gnu: http-parser: Update to 2.9.4-1.ec8b5ee [fixes CVE-2020-8287].
Fixes CVE-2020-8287.

* gnu/packages/web.scm (http-parser): Update to 2.9.4-1.ec8b5ee.
  [source]: Add patch to mitigate CVE.
* gnu/packages/patches/patches/http-parser-CVE-2020-8287.patch: New file.
* gnu/local.mk [dist_patch_DATA]: New patch.
2021-02-24 10:29:20 +01:00
Leo Famulari 84e082e317
gnu: Python: Fix CVE-2021-3177.
* gnu/packages/patches/python-3.8-CVE-2021-3177.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-3.8)[replacement]: New field.
(python-3.8/fixed): New variable.
2021-02-23 14:12:33 -05:00
Efraim Flashner c2fdc528dd
gnu: ruby-rack: Update to 2.2.3.
* gnu/packages/ruby.scm (ruby-rack): Update to 2.2.3.
[source]: Remove patch. Add snippet.
[arguments]: Adjust custom 'fix-tests phase. Remove 'make-files-writable
phase.
[native-inputs]: Remove ruby-minitest-sprint, which. Add
ruby-minitest-global-expectations.
[propagated-inputs]: Remove ruby-concurrent.
* gnu/packages/patches/ruby-rack-ignore-failing-test.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-02-23 16:04:27 +02:00
Efraim Flashner ebd8e447e9
gnu: ruby-tzinfo-data: Update to 1.2021.1.
* gnu/packages/ruby.scm (ruby-tzinfo-data): Update to 1.2021.1.
[source]: Remove patch.
[arguments]: Add custom 'patch-source, 'pre-check phases.
[native-inputs]: Add IANA timezone data files.
* gnu/packages/patches/ruby-tzinfo-data-ignore-broken-test.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-02-23 16:04:27 +02:00
Ludovic Courtès 4f4b749e75
gnu: inetutils: Update to 2.0.
* gnu/packages/admin.scm (inetutils): Update to 2.0.
[source](patches): Remove.
* gnu/packages/patches/inetutils-hurd.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-02-21 22:50:22 +01:00
Marius Bakke 4ac9db0d75
image: Add rock64 support.
* gnu/system/images/rock64.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2021-02-21 21:39:38 +01:00
Nicolas Goaziou 0c6f1b1a6d
gnu: exiv2-0.26: Remove variable.
* gnu/packages/image.scm (exiv2-0.26): Remove variable.
* gnu/packages/patches/exiv2-CVE-2017-14859-14862-14864.patch:
* gnu/packages/patches/exiv2-CVE-2017-14860.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Apply removal.
2021-02-21 10:35:43 +01:00
Efraim Flashner ae1f36f2a8
gnu: screen: Patch CVE-2021-26937.
* gnu/packages/screen.scm (screen)[source]: Add patch.
* gnu/packages/patches/screen-CVE-2021-26937.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-02-21 10:45:16 +02:00
Vincent Legoll f49c13f183
gnu: ghostscript: Update to 9.53.3.
* gnu/packages/ghostscript.scm (ghostscript): Update to 9.53.3.
[source]: Remove obsolete patch 'ghostscript-CVE-2020-15900.patch'.
* gnu/packages/patches/ghostscript-CVE-2020-15900.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-02-20 17:38:26 -05:00
Vincent Legoll 51697aab42
gnu: lrzip: Update to 0.640.
* gnu/packages/compression.scm (lrzip): Update to 0.640.
[source]: Remove obsolete patch 'lrzip-CVE-2017-8842.patch'.
[inputs]: Add lz4.
* gnu/packages/patches/lrzip-CVE-2017-8842.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-02-20 13:40:54 -05:00
Leo Famulari f08c7cb0c7
gnu: Python 3.9: Fix CVE-2021-3177.
* gnu/packages/patches/python-3.9-CVE-2021-3177.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-3.9)[source]: Use it.
2021-02-19 17:58:54 -05:00
Ricardo Wurmus f3318fefe4
gnu: Add perl-math-matrixreal.
* gnu/packages/perl-maths.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2021-02-19 17:57:43 +01:00
Efraim Flashner 301d1bacc1
gnu: ruby-rubocop: Update to 1.10.0.
* gnu/packages/ruby.scm (ruby-rubocop): Update to 1.10.0.
[source]: Remove patch.
[arguments]: Remove custom 'remove-problematic-tests, 'disable-bundler,
'replace-git-ls-files phases. Add custom 'check phase.
[native-inputs]: Add ruby-memory-profiler, ruby-rake,
ruby-rubocop-minimal, ruby-rubocop-performance-minimal,
ruby-rubocop-rspec-minimal, ruby-simplecov, ruby-stackprof. Replace
ruby-webmock-2 with ruby-webmock.
(ruby-rubocop-minimal, ruby-rubocop-performance-minimal,
ruby-rubocop-rspec-minimal): New variables.
* gnu/packages/patches/ruby-rubocop-break-dependency-cycle.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-02-17 16:16:37 +02:00
Stefan Reichör adae5d75b6
gnu: Add run.
* gnu/packages/task-runners.scm (run): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-02-15 11:37:58 +01:00
Vagrant Cascadian d588cc8fa9
gnu: diffoscope: Update to use python-magic.
Fixes: https://salsa.debian.org/reproducible-builds/diffoscope/-/issues/238

* gnu/packages/patches/diffoscope-revert-to-magic-open.patch: Remove file.
* gnu/local.mk [dist_patch_DATA]: Update.
* gnu/packages/diffoscope.scm (diffoscope)[source]: Remove patch.
  [inputs]: Remove python-file.
2021-02-12 16:13:07 -08:00
Simon South db6b9d2f4b
services: Add transmission-daemon service.
* gnu/services/file-sharing.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* po/packages/POTFILES.in: Add it.
* tests/services/file-sharing.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
* doc/guix.texi (File-Sharing Services): New section.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-12 15:11:36 +08:00
Vagrant Cascadian f813750a4a
gnu: diffoscope: Update to 166.
* gnu/packages/diffoscope.scm (diffoscope): Update to 166.
  [source]: Add patch to use magic.open compatibility interface.
* gnu/packages/patches/diffoscope-revert-to-magic-open.patch: New file.
* gnu/local.mk [dist_patch_DATA]: New patch.
2021-02-11 18:57:38 -08:00
Danny Milosavljevic abd318ff4b
Merge branch 'master' into core-updates 2021-02-11 19:12:36 +01:00
Maxim Cournoyer 7878f344c1
gnu: rust: Only test the current release.
By only testing the final Rust in the bootstrap chain, the total build time is
reduced by approximately 30%, from about 11 hours to 8 hours on a fast
machine.  Combined with commit df93fc21a4, the total Rust bootstrap chain
build time should have been halved.

* gnu/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
* gnu/packages/rust.scm (rust-1.29): Do not apply the above patch.
(rust-1.30): Remove the "doc" output.  Disable tests.
[phases]{set-env}: Do not set CFG_DISABLE_CROSS_TESTS.
{relax-gdb-auto-load-safe-path, patch-tests, patch-cargo-index-update}
{patch-aarch64-test, remove-unsupported-tests, disable-amd64-avx-test}
{patch-cargo-tests, patch-cargo-env-shebang}
{ignore-cargo-package-tests}: Remove phases.
{configure}: Remove the doc and gdb bindings and their respective
configuration entries in the generated config.toml file.
{check}: Remove phase.
[native-inputs]{bison, flex, gdb, procps}: Remove inputs.
{python-2}: Replace by python-wrapper.
{rust-1.29}: Do not export variable.
{rust-1.30}: Likewise.
(rust-1.31): Likewise.
[arguments]: Remove field.
(rust-1.32): Do not export variable.
[source]: Remove patch.
[phases]{override-jemalloc}: Order following 'configure.
{remove-flaky-test, patch-aarch64-test}: Remove deletions.
(rust-1.33): Do not export variable.
[arguments]: Remove field.
(rust-1.34): Do not export variable.
(rust-1.35): Likewise.
(rust-1.36): Likewise.
[arguments]: Remove field.
(rust-1.37): Do not export variable.
(rust-1.38): Do not export variable.
[arguments]: Likewise.
(rust-1.39): Do not export variable.
(rust-1.40): Do not export variable.
[phases]: Do not alter the #:phases argument.
(rust-1.41, rust-1.42, rust-1.43): Do not export variables.
(rust-1.44): Likewise.
[arguments]: Remove field.
(rust-1.45): Do not export variable.
[phases]{skip-shebang-tests, skip-networking-test}: Remove phases.
(rust-1.46): Do not export variable.
(rust-1.47): Do not export variable.
[arguments]: Remove field.
(rust-1.48): Do not export variable.
[arguments]: Remove field.
(rust-1.49): Rename to...
(rust): ... this.
[outputs]: Add a "doc" output.
[phases]{enable-docs, add-gdb-to-config}
{relax-gdb-auto-load-safe-path, patch-cargo-env-shebang}
{disable-tests-requiring-git, disable-interrupt-tests}
{patch-command-exec-tests, patch-command-uid-gid-test}
{skip-shebang-tests, patch-process-tests}: New phases.
[native-inputs]{gdb-9.2, procps}: New inputs.
2021-02-11 07:04:20 -05:00
Tobias Geerinckx-Rice 4590ee9bd0
Revert "gnu: inetutils: Update to 2.0."
This reverts commit 55050e54a9, which
rebuilds xdg-utils and hence a good part of the world (1838 packages).

Reported by mroh in #guix.
2021-02-10 00:18:17 +01:00
Ludovic Courtès 55050e54a9
gnu: inetutils: Update to 2.0.
* gnu/packages/admin.scm (inetutils): Update to 2.0.
[source](patches): Remove.
* gnu/packages/patches/inetutils-hurd.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-02-09 23:38:33 +01:00
Vincent Legoll d00380b007
gnu: vorbis-tools: Update to 1.4.2.
* gnu/packages/xiph.scm (vorbis-tools): Update to 1.4.2.
(source): Remove obsolete patches.
* gnu/packages/patches/vorbis-tools-CVE-2014-9638+CVE-2014-9639.patch,
gnu/packages/patches/vorbis-tools-CVE-2014-9640.patch,
gnu/packages/patches/vorbis-tools-CVE-2015-6749.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-02-09 15:06:08 -05:00
Timotej Lazar 1e9f667708
gnu: qpdfview: Fix qt-5.15 compatibility.
* gnu/packages/pdf.scm (qpdfview)[source]: Add patch to include a missing
header.
* gnu/packages/patches/qpdfview-qt515-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-02-09 14:53:01 -05:00
Nicolas Goaziou 7abb893c98
gnu: emacs-undohist-el: Update to 0.2.1.
* gnu/packages/emacs-xyz.scm (emacs-undohist-el): Update to 0.2.1.
[origin]: Remove unnecessary patch.
* gnu/packages/patches/emacs-undohist-ignored.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Apply deletion.
2021-02-08 21:57:59 +01:00
Eric Bavier 8effdd1969
gnu: hdf5: Update to 1.8.22.
Fixes CVE-2018-14033, CVE-2018-11206, CVE-2018-13870, CVE-2018-13869, and
CVE-2018-17435

* gnu/packages/maths.scm (hdf5-1.8): Update to 1.8.22.
* gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch: Delete upstreamed
patch.
* gnu/local/mk (dist_patch_DATA): Remove it.
2021-02-08 13:25:34 -06:00
Pierre Langlois 7b207e0849
gnu: clementine: Update to 1.4.0rc1-450.
* gnu/packages/music.scm (clementine): Update to 1.4.0rc1-450.
[source]: Adapt snippet to list bundled directories to keep rather than ones
to delete.  Unbundled gmock.  Remove patches no longer needed.
[arguments]: Set -DUSE_SYSTEM_TAGLIB=TRUE.
[native-inputs]: Add googletest.
[inputs]: Remove openssl.
[license]: Remove gmock license.
* gnu/packages/patches/clementine-fix-sqlite.patch: Remove.
* gnu/packages/patches/clementine-remove-crypto++-dependency.patch: Remvoe
* gnu/packages/patches/clementine-use-openssl.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove them.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-02-08 11:14:42 +01:00
Danny Milosavljevic df93fc21a4
gnu: rust: Bootstrap rust@1.29.2 by mrustc@0.9.
This reduced bootstrap reduces the complete Rust bootstrap chain build time by
approximately 30% compared to the original (about 11 hours instead of 16
hours, on a fast machine).

* gnu/packages/patches/rust-1.45-linker-locale.patch: Delete file.
* gnu/packages/patches/rust-1.48-linker-locale.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): De-register deleted files.
* gnu/packages/rust.scm (%mrustc-source): New variable.
(rust-1.29): New variable.  It is bootstrapped from mrust 0.9, which is used
in source form.
(rust-1.30): New variable.
(rust-1.31)[phases]{patch-command-exec-tests-phase}: Rewrite so that it
doesn't need to be redefined later when the file is moved.
{enable-docs}: New phase.
(rust-1.32): Disable tests.
[inputs]: Remove field.
[phases]{override-jemalloc}: Reorder after the configure phase.
(rust-1.33): Enable tests.
[phases]{disable-codegen-tests}: New phase.
(rust-1.34)[phases]{disable-codegen-tests}: Delete phase.
(rust-1.35)[arguments]: Remove field.  The disable-tidy-bins-check phase is
now defined in rust-1.30.
(rust-1.38)[phases]{patch-command-exec-tests-phase}: Remove.
{patch-command-uid-gid-test}: Do not worry about the Tidy lint test, which is disabled.
(rust-1.40)[phases]: Move #:validate-runpath? inside the use of
'substitute-keyword-arguments'.
{neuter-tidy}: Delete.
{patch-command-uid-gid-test}: Make the regexp more precise.  Remove the TODO
comment, which has been addressed.
(rust-1.44)[inputs]: Replace python2 by python-wrapper.
[phases]{use-python3}: New phase.
(rust-1.45)[source]: Remove field.  The linker locale fix is now made via ...
[phases]{set-linker-locale-to-utf8}: ... this phase.
(rust-1.46)[phases]{build, check}: Allow parallel execution.  Add comments.
{delete-install-logs}: Delete phase; it's now done in rust-1.30.
(rust-1.47)[phases]{patch-cargo-checksums}: Do not reorder phase.  The
initial ordering of the phase has been fixed with in the rust-1.30 package.
(rust-1.48)[source]: Remove field.
2021-02-05 09:46:52 -05:00
Maxim Cournoyer 87144b17f8
rust: Cleanup commit to prepare for new bootstrap.
This commit is not atomic and is not functional by itself; this is done so to
make the next set of changes more comprehensible.

* gnu/packages/patches/rust-1.19-mrustc.patch: Delete file.
* gnu/packages/patches/rust-1.30-gdb-llvm.patch: Likewise.
* gnu/packages/patches/rust-bootstrap-stage0-test.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): Un-register files.
* gnu/packages/rust.scm (mrustc): Delete variable.
(rust-1.19, rust-1.20, rust-1.21 rust-1.22, rust-1.23, rust-1.24)
(rust-1.25, rust-1.26, rust-1.27, rust-1.28, rust-1.29)
(rust-1.30): Delete variables.
(rust-1.31 through rust-1.49): Fix indentation and do other cosmetic changes.
(rust): Define as rust-1.49.
2021-02-05 09:40:37 -05:00
Maxim Cournoyer 3299530c43
gnu: guile-ssh: Fix test suite on Guile 3.0.5.
* gnu/packages/patches/guile-ssh-fix-test-suite.patch: New file.
* gnu/local.mk: Register it.
* gnu/packages/ssh.scm (guile-ssh)[source]: Use it.  Also provide a better
file name than 'git-checkout'.
2021-02-04 14:58:10 -05:00
Christopher Baines e740cc6140
Merge branch 'master' into core-updates 2021-02-03 09:57:35 +00:00
Ricardo Wurmus 5058090ed4
gnu: Add python-mediafile.
* gnu/packages/music.scm (python-mediafile): New variable.
* gnu/packages/patches/python-mediafile-wavpack.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-02-02 22:02:22 +01:00
Alexey Abramov 5be01dcdc1
gnu: obs: Use an environment variable for plugins location.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/video.scm (obs): Use it.
* gnu/packages/patches/obs-modules-location.patch: Patch it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-02-02 11:05:43 +01:00
Leo Famulari 75b775e81b
Merge branch 'staging' 2021-02-01 14:18:38 -05:00
Maxim Cournoyer 98f147dbda
gnu: ganeti: Remove PYTHONPATH-altering patch.
* gnu/packages/patches/ganeti-preserve-PYTHONPATH.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Un-register it.
* gnu/packages/virtualization.scm (ganeti): Remove patch.
2021-02-01 11:54:03 -05:00
Raghav Gururajan a84399eddf
gnu: Add webrtc-for-telegram-desktop.
* gnu/packages/telegram.scm: New module.
(webrtc-for-telegram-desktop): New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-01-31 09:22:50 +01:00
Raghav Gururajan 6bacfa63c1
gnu: Add c++-gsl.
* gnu/packages/cpp.scm (c++-gsl): New variable.
* gnu/packages/patches/c++-gsl-find-system-gtest.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-01-31 09:22:46 +01:00
Leo Famulari 0981f872cb
gnu: gst-plugins-good: Fix a test failure on 32-bit systems.
* gnu/packages/patches/gst-plugins-good-fix-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gstreamer.scm (gst-plugins-good)[source]: Use it.
2021-01-31 01:00:30 -05:00
Leo Famulari 42008264d9
gnu: Remove avogadro.
This package fails to build and has been superseded by avogadro2.

* gnu/packages/chemistry.scm (avogadro): Remove variable.
* gnu/packages/patches/avogadro-boost148.patch,
gnu/packages/patches/avogadro-eigen3-update.patch,
gnu/packages/patches/avogadro-python-eigen-lib.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2021-01-29 15:19:02 -05:00
Maxim Cournoyer 0ad27959d8
gnu: fontconfig: Update to 2.13.93.
* gnu/packages/patches/fontconfig-hurd-path-max.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Un-register file.
* gnu/packages/fontutils.scm (fontconfig)[source]
{uri}: Use the .tar.xz archive.
{patches}: Remove field.  The patch was merged upstream.
[native-inputs]: Add python-minimal.
[phases]{skip-problematic-tests}: Add phase.
[configure-flags]: Do not set PYTHON to false.
* gnu/packages/fontutils.scm (fontconfig-with-documentation)
[native-inputs]: Add docbook-utils.
2021-01-29 15:05:41 -05:00
Mathieu Othacehe 189e62fa69
services: cuirass: Add remote build support. 2021-01-28 12:57:27 +01:00
Tobias Geerinckx-Rice cd80e11b95
gnu: pinentry-tty: Update to 1.1.1.
* gnu/packages/gnupg.scm (pinentry-tty): Update to 1.1.1.
(pinentry-efl)[source]: Remove patch.
* gnu/packages/patches/pinentry-efl.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-01-27 22:37:33 +01:00
Leo Famulari 5aeee07cc9
gnu: VLC: Remove obsolete patch.
* gnu/packages/patches/vlc-qt-5.15.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/video.scm (vlc)[source]: Remove patch.
2021-01-27 16:03:16 -05:00
Maxim Cournoyer dbcd205050
gnu: python-xyz: Move a few modules to (gnu packages python-build).
* gnu/packages/python-xyz.scm (python-pep517): Inherit from
python-pep517-bootstrap.  Remove the inherited common fields.
(python-poetry-core, python-wheel)
(python-toml): Move to ...
* gnu/packages/python-build.scm: ... here, a new module.
(python-pep517-bootstrap): New package.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register the new module.
2021-01-27 08:05:42 -05:00
Greg Hogan 94cf367634
gnu: boost: Patch transitive linking bug.
* gnu/packages/patches/boost-fix-transitive-linking.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/boost.scm (boost)[source]: Use it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-01-26 23:32:54 +01:00
Leo Famulari 59c03bd4f9
gnu: Mutt: Update to 2.0.5.
* gnu/packages/patches/mutt-CVE-2021-3181.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/mail.scm (mutt): Update to 2.0.5.
[source]: Remove obsolete patch.
2021-01-25 16:38:57 -05:00
Leo Famulari 68dd78e2e4
Merge branch 'master' into staging 2021-01-25 15:40:55 -05:00
Leo Famulari 708d3ec0de
gnu: Mutt: Fix CVE-2021-3181.
* gnu/packages/patches/mutt-CVE-2021-3181.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (mutt)[source]: Use it.
2021-01-20 19:36:24 -05:00
Ricardo Wurmus 81710c867c
gnu: r-httpuv: Update to 1.5.5.
* gnu/packages/cran.scm (r-httpuv): Update to 1.5.5.
[source]: Update patch name and remove unused modules.
* gnu/packages/patches/r-httpuv-1.5.4-unvendor-libuv.patch: Rename this file...
* gnu/packages/patches/r-httpuv-1.5.5-unvendor-libuv.patch: ...to this.
* gnu/local.mk (dist_patch_DATA): Rename it.
2021-01-20 17:18:59 +01:00
Eric Bavier c67ff5636f
gnu: idris: Update to 1.3.3.
* gnu/packages/patches/idris-disable-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/idris.scm (idris): Update to 1.3.3.
[source]: Use the patch.
[native-inputs]: Add ghc-cheapskate.
[arguments]: Adjust cheapskate version bounds.  Make auxiliary test script
executable.
2021-01-20 09:58:31 -06:00
Leo Famulari 8b55544212
gnu: mesa: Skip another test.
* gnu/packages/patches/mesa-skip-disk-cache-test.patch: Rename to ...
* gnu/packages/patches/mesa-skip-tests.patch: ... new file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/gl.scm (mesa)[source]: Adjust accordingly.
2021-01-18 15:07:05 -05:00
Efraim Flashner fc9fd5496f
gnu: freebayes: Update to 1.3.3.
* gnu/packages/bioinformatics.scm (freebayes): Update to 1.3.3.
[source]: Add patch. Add snippet to remove vendored library.
[build-system]: Switch to meson-build-system.
[inputs]: Remove bamtools. Add fastahack, smithwaterman, tabixpp.
[native-inputs]: Remove procps, python-2, tabixpp source, smithwaterman
source, multichoose source, fsom source, filevercmp source, fastahack
source, bash-tap source. Add bash-tap, grep, pkg-config, simde, vcflib.
[arguments]: Drop make-flags. Don't delete 'configure phase. Delete
custom 'fix-tests, 'build-tabixpp-and-vcflib, 'fix-makefiles, 'install
phases. Adjust 'unpack-submodule-sources phase to changed native-inputs.
Add new 'patch-source phase.
2021-01-17 15:47:32 +02:00
Maxim Cournoyer 0054cad5ad
gnu: python-typing-inspect: Fix build on Python 3.9.
* gnu/packages/patches/python-typing-inspect-fix.patch: Add patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python-xyz.scm (python-typing-inspect)[patches]: Apply it.
2021-01-15 16:33:10 -05:00
Maxim Cournoyer 43c889de85
gnu: python-pyflakes: Fix build.
* gnu/packages/patches/python-pyflakes-fix-tests.patch: Add patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python-xyz.scm (python-pyflakes)[patches]: Apply it.
[home-page]: Update.
2021-01-15 16:33:08 -05:00
Maxim Cournoyer 13bb41f814
gnu: python-xyz: Move a few modules to (gnu packages python-build).
* gnu/packages/python-xyz.scm (python-pep517): Inherit from
python-pep517-bootstrap.  Remove the inherited common fields.
(python-poetry-core, python-wheel)
(python-toml): Move to ...
* gnu/packages/python-build.scm: ... here, a new module.
(python-pep517-bootstrap): New package.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register the new module.
2021-01-15 16:33:07 -05:00
Ludovic Courtès 3a0c7e7d1e
gnu: findutils: Update to 4.8.0.
* gnu/packages/base.scm (findutils): Update to 4.8.0.
[source](patches): Remove "findutils-test-rwlock-threads.patch".
* gnu/packages/patches/findutils-test-rwlock-threads.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/commencement.scm (findutils-boot0)[arguments]: Add
'skip-fnmatch-test' phase.
2021-01-15 14:06:13 +01:00
Efraim Flashner 93309e25c7
gnu: vcflib: Update to 1.0.2.
* gnu/packages/bioinformatics.scm (vcflib): Update to 1.0.2.
[source]: Download using git-fetch. Remove patch. Update snippet to use
packaged libraries.
[build-system]: Switch to cmake-build-system.
[inputs]: Add bzip2.
[native-inputs]: Add package-source of fsom.
[arguments]: Delete custom 'set-flags, 'install phases. Don't delete
'configure phase. Adjust 'unpack-submodule-sources phase.
* gnu/packages/patches/vcflib-use-shared-libraries.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-01-14 20:43:31 +02:00
Maxim Cournoyer 01f0707207
Merge branch 'staging' into 'core-updates'.
Conflicts:

	gnu/local.mk
	gnu/packages/cmake.scm
	gnu/packages/curl.scm
	gnu/packages/gl.scm
	gnu/packages/glib.scm
	gnu/packages/guile.scm
	gnu/packages/node.scm
	gnu/packages/openldap.scm
	gnu/packages/package-management.scm
	gnu/packages/python-xyz.scm
	gnu/packages/python.scm
	gnu/packages/tls.scm
	gnu/packages/vpn.scm
	gnu/packages/xorg.scm
2021-01-13 23:45:53 -05:00
Vincent Legoll aeed7218a9
gnu: Add ipxe.
* gnu/packages/bootloaders.scm (ipxe): New variable.
* gnu/packages/patches/ipxe-reproducible-geniso.patch: New file …
* gnu/local.mk (dist_patch_DATA): … add it.

Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
Co-authored-by: Brice Waegeneire <brice@waegenei.re>
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2021-01-14 01:17:04 +01:00
Efraim Flashner 838427499d
gnu: python-libxml2: Fix building with python-3.9.
* gnu/packages/xml.scm (python-libxml2)[source]: Add patch.
* gnu/packages/patches/python-libxml2-python39-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-01-13 11:53:30 +02:00
Maxim Cournoyer b5c4f5d9ee
gnu: python: Update to 3.9.1 and streamline package definition.
* gnu/packages/python.scm (python-3.8): Rename to...
(python-3.9): ... this.  Update version to 3.9.1.
[arguments]{make-flags}: Restore test_socket test.
[phases]{unset-SOURCE_DATE_EPOCH, reset-SOURCE_DATE_EPOCH}: Remove phases.
{rebuild-bytecode}: Simplify code.  Set the invalidation-mode argument of the
compileall module to "unchecked-hash", to ensure determinism.
(python-3): Adjust to refer to python-3.9.
* gnu/packages/patches/python-3-fix-tests.patch: Rebase and extend patch.
* gnu/packages/patches/python-3.8-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
2021-01-12 23:55:48 -05:00
Oleg Pykhalov 79ba12a1db
services: Add syncthing service.
* gnu/services/syncthing.scm: New file.
* gnu/local.mk: Add this.
* doc/guix.texi: Document this.
2021-01-12 14:40:36 +03:00
Tobias Geerinckx-Rice df50d2a02d
gnu: podofo: Update to 0.9.7.
* gnu/packages/pdf.scm (podofo): Update to 0.9.7.
[source]: Remove patch.
* gnu/packages/patches/podofo-cmake-3.12.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-01-11 23:31:09 +01:00
Mathieu Othacehe 21cf0d36db
gnu: guile: Fix tests on emulated architectures.
The stack overflow test limits the virtual memory size using setrlimit with
RLIMIT_AS argument. This is ignored when using QEMU transparent emulation,
causing the test to crash.

* gnu/packages/patches/guile-2.2-skip-so-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/guile.scm (guile-3.0-latest): Add it.
2021-01-11 12:06:12 +01:00
Mathieu Othacehe a8650a70ab
gnu: guile: Fix tests on emulated architectures.
The stack overflow test limits the virtual memory size using setrlimit with
RLIMIT_AS argument. This is ignored when using QEMU transparent emulation,
causing the test to crash.

* gnu/packages/patches/guile-2.2-skip-so-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/guile.scm (guile-2.2): Add it.
2021-01-11 11:18:54 +01:00
Efraim Flashner 808e4c141e
gnu: tipp10: Build with qt-5.
* gnu/packages/education.scm (tipp10)[source]: Add new patches.
[inputs]: Remove qt-4, sqlite. Add qtbase, qtmultimedia.
* gnu/packages/patches/tipp10-disable-downloader.patch,
gnu/packages/patches/tipp10-qt5.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2021-01-10 15:10:26 +02:00
Efraim Flashner 6985a1acb3
Merge branch 'master' into staging 2021-01-10 14:30:36 +02:00
Efraim Flashner d0fff8f840
gnu: pulseview: Fix qt-5.15 compatibility.
* gnu/packages/electronics.scm (pulseview)[source]: Add patch.
* gnu/packages/patches/pulseview-qt515-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-01-10 14:23:20 +02:00
Nicolas Goaziou bc66d35164
gnu: emacs-scheme-complete: Update to 0.9.9.
* gnu/packages/emacs-xyz.scm (emacs-scheme-complete): Update to 0.9.9.
* gnu/packages/patches/emacs-scheme-complete-scheme-r5rs-info.patch: Remove file.
* gnu/local.mk: Update file.
2021-01-09 11:38:02 +01:00
Efraim Flashner 3b141f2eb9
gnu: gpsbabel: Enable tests.
* gnu/packages/patches/gps.scm (gpsbabel)[source]: Add patch.
[arguments]: Enable tests.
* gnu/packages/patches/gpsbabel-fix-i686-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-01-06 11:14:53 +02:00
Björn Höfling f024a7ba60
gnu: gpsbabel: Update to 1.7.0.
* gnu/packages/gps.scm (gpsbabel): Update to 1.7.0.
[source]: Use git-fetch, remove obsolete patches.
[inputs]: Add libusb.
* gnu/packages/patches/gpsbabel-minizip.patch: Remove file.
* gnu/packages/patches/gpsbabel-qstring.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove entries.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-01-06 11:14:53 +02:00
Miguel Ángel Arruga Vivas e3281657c8
gnu: smalltalk: Fix integer multiplication overflow.
* gnu/local.mk (dist_patch_DATA): Add Smalltalk patch.
* gnu/packages/patches/smalltalk-multiplication-overflow.patch: Patch
from upstream commit 72ada189aba0283c551ead16635c1983968080b8.
* gnu/packages/smalltalk.scm (smalltalk): Use patch and link with gmp
and lightning libraries instead of the included source.
2021-01-05 12:51:12 +01:00
Raghav Gururajan 3fd4477809
gnu: pidgin: Enable MultiMedia and A/V support.
* gnu/packages/messaging.scm (pidgin) [patches]<search-patches>
[pidgin-vv-gst.patch]: New patch.
[arguments]<#:configure-flags>[--diable-vv]: Remove flag.
[--disable-gstreamer]: Remove flag.
[CFLAGS]: New flag.
[inputs]: Add farstream and gstreamer. Move gtk+-2 to ...
[propagated-inputs]: ... here.
* gnu/packages/patches/pidgin-vv-gst.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add entry.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2021-01-03 17:30:30 +01:00
Raghav Gururajan 89f4f0baa9
gnu: pidgin: Upgrade to 2.14.1.
* gnu/packages/messaging.scm (pidgin) [version]: Modify.
[source]<origin>[sha256]: Modify base32.
[patches]<search-patches>[pidgin-libnm.patch]: Remove obsolete patch.
* gnu/packages/patches/pidgin-libnm.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove entry.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2021-01-03 17:30:29 +01:00
Efraim Flashner c389899d83
gnu: Register missing patch.
This is a follow-up to 402e697a11.

* gnu/local.mk (dist_patch_DATA): Register rust-1.48 patch.
2021-01-02 20:48:50 +02:00
Marius Bakke 78cf7a4571
Merge branch 'ungrafting' into staging 2020-12-29 17:39:24 +01:00
Marius Bakke a22e75c073
Merge branch 'master' into ungrafting 2020-12-29 17:37:17 +01:00
Leo Prikler 142f8713ab
gnu: Add shakespeare-spl.
* gnu/packages/patches/shakespeare-spl-fix-grammar.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it here.
* gnu/packages/esolangs.scm (shakespeare-spl): New variable.
2020-12-29 13:54:48 +01:00
Kei Kebreau 3e6c114241
gnu: audacity: Update to 2.4.2.
* gnu/packages/audio.scm (audacity): Update to 2.4.2.
[source]: Add patch.  Don't delete portaudio-v19, since only the bundled copy
can be built.
[build-system]: Switch to cmake-build-system.
[inputs]: Remove portaudio.
[arguments]: Adjust configure flags for CMake.  Remove 'fix-sbsms-check
phase.  Add 'comment-out-revision-ident phase.
* gnu/local.mk (dist_patch_DATA): Register patch.
* gnu/packages/patches/audacity-add-include.patch: New file.
2020-12-27 16:42:02 -05:00
Ludovic Courtès 951610567f
gnu: gdbm: Update to 1.19.
* gnu/packages/patches/gdbm-gcc-compat.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/dbm.scm (gdbm)[source]: Remove 'patches'.
2020-12-27 18:44:57 +01:00
Giacomo Leidi 4688c9f52d
gnu: Add hunspell-dict-it-it.
* gnu/packages/hunspell.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-12-27 17:23:40 +01:00
Leo Famulari e8d4c6deaa
gnu: VLC: Fix build with Qt 5.15.
* gnu/packages/patches/vlc-qt-5.15.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/video.scm (vlc)[source]: Use it.
2020-12-23 17:55:16 -05:00
Marius Bakke 119fd58922
Merge branch 'ungrafting' into staging 2020-12-21 23:44:54 +01:00
Marius Bakke bbe4ed65ed
Merge branch 'master' into ungrafting 2020-12-21 23:42:10 +01:00
Marius Bakke 85ba5e9335
gnu: sbc: Fix build on non-x86 architectures.
* gnu/packages/patches/sbc-fix-build-non-x86.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/linux.scm (sbc)[source](patches): New field.
2020-12-21 23:38:22 +01:00
Simon South c626e281b4
gnu: sdcc: Move to embedded.scm.
* gnu/packages/embedded.scm: Add sdcc from sdcc.scm.
* gnu/packages/electronics.scm: Update #:use-module directive.
* gnu/packages/sdcc.scm: Delete file.
* gnu/local.mk: Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-12-21 17:47:36 +01:00
Chris Marusich b50341dba9
Revert "gnu: libffi: Add unreleased patch to fix float128 on powerpc64le."
This reverts commit 4fff5ab241.  In
<https://debbugs.gnu.org/cgi/bugreport.cgi?bug=45252> we decided to apply a
patch to master instead, so this change is no longer needed on core-updates.
2020-12-20 17:22:03 -08:00