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1720 Commits (7ab6907448002d7049f01f320300a9daa2388e69)

Author SHA1 Message Date
Ricardo Wurmus 089f64657b
gnu: r-glimma: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.2.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 4485bc7183
gnu: r-goseq: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.44.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 87d6e68015
gnu: r-ctc: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.66.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 675f1a9144
gnu: r-genomicinteractions: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.26.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus ba7757cf1f
gnu: r-interactionset: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.20.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 43a0a48a69
gnu: r-riboseqr: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.26.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 0443b3c180
gnu: r-riboprofiling: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.22.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus afc59d2e2c
gnu: r-chipcomp: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.22.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 38f2e3979f
gnu: r-bayseq: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.26.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 11c7a044bd
gnu: r-qdnaseq: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.28.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 1c3e239270
gnu: r-cghcall: Update to 2.54.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.54.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 09c90d8fb4
gnu: r-cghbase: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.52.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 0045d21f67
gnu: r-marray: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.70.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 202202c8ad
gnu: r-matrixgenerics: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.4.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 538605493c
gnu: r-chippeakanno: Update to 3.26.0. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.0.
[propagated-inputs]: Add r-interactionset.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus fceca5cd82
gnu: r-graph: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.70.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus bed64f7be6
gnu: r-multtest: Update to 2.48.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.48.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus ff7a86f0ca
gnu: r-mbkmeans: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.8.0.
[propagated-inputs]: Remove r-bluster; add r-rcpparmadillo.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 27abca93b1
gnu: r-diffbind: Update to 3.2.1. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.1.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 737a228702
gnu: r-greylistchip: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.24.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 941a868515
gnu: r-apeglm: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.14.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 371149da6f
gnu: r-qvalue: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.24.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 359c350c7d
gnu: r-oligo: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.56.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 2c9c656f47
gnu: r-oligoclasses: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.54.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus c68607725b
gnu: r-geneplotter: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.70.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 473371dfc1
gnu: r-zlibbioc: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.38.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 092d2a8d85
gnu: r-xvector: Update to 0.32.0. 
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.32.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus e4a34df239
gnu: r-vsn: Update to 3.60.0. 
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.60.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus c73b9d6c66
gnu: r-variantannotation: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.38.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 2817a8f292
gnu: r-tximport: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.20.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus ad6ba3de65
gnu: r-topgo: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.44.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 7728c5909f
gnu: r-systempiper: Update to 1.26.2. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 1.26.2.
[propagated-inputs]: Add r-testthat.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 81c55df9a8
gnu: r-sva: Update to 3.40.0. 
* gnu/packages/bioconductor.scm (r-sva): Update to 3.40.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 6eaa9221d9
gnu: r-summarizedexperiment: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.22.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 8c0f2d9e0a
gnu: r-structuralvariantannotation: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.8.0.
[propagated-inputs]: Add r-rlang.
[native-inputs]: Add r-knitr.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 8e0dac09c4
gnu: r-slingshot: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.0.0.
[propagated-inputs]: Remove r-ape; add r-s4vectors and r-trajectoryutils.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 15f371cc89
gnu: r-shortread: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.50.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 76edc5ae98
gnu: r-seqpattern: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.24.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 58ae27d46c
gnu: r-seqlogo: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.58.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 5ce21e7153
gnu: r-rtracklayer: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.52.0.
[propagated-inputs]: Add r-biocio and r-restfulr.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus e22d743aa6
gnu: r-rsamtools: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.8.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus f2f4ca7456
gnu: r-rhdf5filters: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.4.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 51bee5c40f
gnu: r-reportingtools: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.32.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 2da4ee4c77
gnu: r-regioner: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.24.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 38fa99c1d0
gnu: r-rcas: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.18.0.
[propagated-inputs]: Add r-knitr.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 7c45bc9391
gnu: r-rbgl: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.68.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus dc67525ae6
gnu: r-protgenerics: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.24.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 0ec6177cc1
gnu: r-pcamethods: Update to 1.84.0. 
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.84.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 5d37cee6c1
gnu: r-organismdbi: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.34.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus 00b2174930
gnu: r-mzid: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.30.0.
 2021-06-05 09:12:44 +02:00
Ricardo Wurmus d647eb090b
gnu: r-msnbase: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.18.0.
[propagated-inputs]: Remove r-preprocesscore; add r-mscoreutils.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus c966cef2b4
gnu: r-mutationalpatterns: Update to 3.2.0. 
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.2.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus 0b3fd7e89a
gnu: r-methylkit: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.18.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus 595b75e05c
gnu: r-limma: Update to 3.48.0. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.48.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus 60b598ee16
gnu: r-keggrest: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.32.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus 2cbb8e19af
gnu: r-interactivedisplaybase: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.30.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus 94b4e64fd0
gnu: r-impute: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-impute): Update to 1.66.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus 76fc8a53b2
gnu: r-rhtslib: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 1.24.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus 78eb1fdf3e
gnu: r-hpar: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.34.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus 330a7fe3b1
gnu: r-gseabase: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.54.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus 214e784b57
gnu: r-gostats: Update to 2.58.0. 
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.58.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus 1b44202e20
gnu: r-genomicranges: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.44.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus d491b7eb1a
gnu: r-genomicfiles: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.28.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus 62889b9915
gnu: r-genomicfeatures: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.44.0.
[propagated-inputs]: Add r-biocio.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus 570e80d62f
gnu: r-genomicalignments: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.28.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus f88ab81fc7
gnu: r-genomeinfodb: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.28.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus ef7bbc40de
gnu: r-genomation: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.24.0.
[propagated-inputs]: Remove r-runit.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus 3c024e9e96
gnu: r-geneoverlap: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.28.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus 389ce4e42b
gnu: r-genefilter: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.74.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus f22f4caa69
gnu: r-gage: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-gage): Update to 2.42.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus ff59b34dc3
gnu: r-fastseg: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.38.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus 6abbb53c3e
gnu: r-ensembldb: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus bdc1b908d3
gnu: r-edger: Update to 3.34.0. 
* gnu/packages/bioconductor.scm (r-edger): Update to 3.34.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus f998c95d60
gnu: r-edaseq: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.26.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus 30ce1f9b66
gnu: r-dirichletmultinomial: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.34.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus e9445cdd78
gnu: r-dexseq: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.38.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus 45225c60cc
gnu: r-deseq2: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.32.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus 2835e7c0be
gnu: r-copywriter: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-copywriter): Update to 2.24.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus a8cfce4852
gnu: r-complexheatmap: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.8.0.
[propagated-inputs]: Remove r-s4vectors; add r-doparallel and r-foreach.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus d296ac9cde
gnu: r-chipseq: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.42.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus ca10bafc65
gnu: r-chipseeker: Update to 1.28.3. 
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.28.3.
[inputs]: Remove r-knitr.
[native-inputs]: Add r-knitr.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus 336107c13d
gnu: r-category: Update to 2.58.0. 
* gnu/packages/bioconductor.scm (r-category): Update to 2.58.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus e039d07bf8
gnu: r-bsgenome: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.60.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus 98f3c55999
gnu: r-biovizbase: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.40.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus 16fe6abd27
gnu: r-biostrings: Update to 2.60.0. 
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.60.0.
[propagated-inputs]: Add r-genomeinfodb.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus 3eedef80e4
gnu: r-biocparallel: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.26.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus f9ae0a4102
gnu: r-biomart: Update to 2.48.0. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.48.0.
[propagated-inputs]: Remove r-openssl and r-xml2; add r-digest.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus 8be5d4f6fc
gnu: r-biobase: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.52.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus baaed6fd68
gnu: r-bamsignals: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.24.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus 3e290768c6
gnu: r-aroma-light: Update to 3.22.0. 
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.22.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus 2071ed58d5
gnu: r-annotationhub: Update to 3.0.0. 
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.0.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus 4d13cf066d
gnu: r-annotationforge: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.34.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus 361f2f647a
gnu: r-annotationfilter: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.16.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus c7811ed4bf
gnu: r-annotationdbi: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.54.0.
[propagated-inputs]: Add r-keggrest.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus 1bb87755b8
gnu: r-annotate: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.70.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus 308067c09c
gnu: r-affxparser: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.64.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus dfeb135ef0
gnu: r-affyio: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.62.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus a9083169c6
gnu: r-affycoretools: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.64.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus 3abb0b6523
gnu: r-affycontam: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.50.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus bd17befeb1
gnu: r-affycompatible: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.52.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus b045bf2d6f
gnu: r-affycomp: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.68.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus af04e2cc12
gnu: r-affy: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-affy): Update to 1.70.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus 60b9546472
gnu: r-iranges: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.26.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus cfd4c05bd4
gnu: r-ideoviz: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.28.0.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus 4075ac7287
gnu: r-bluster: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.2.1.
[propagated-inputs]: Add r-cluster.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus 8eb0c715e3
gnu: r-delayedarray: Update to 0.18.0. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.18.0.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus f0f839c124
gnu: r-deepsnv: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.38.0.
[inputs]: Remove zlib.
[native-inputs]: Add r-knitr.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus dec096f827
gnu: r-decipher: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.20.0.
[propagated-inputs]: Add r-dbi, r-iranges, r-s4vectors, and r-xvector.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus 116df58449
gnu: r-cummerbund: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.34.0.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus e6c5d8ce2c
gnu: r-coverageview: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.30.0.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus 7bac473d06
gnu: r-biocgenerics: Update to 0.38.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.38.0.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus b05761a5a9
gnu: r-biocversion: Update to 3.13.1. 
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.13.1.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus 405b386656
gnu: r-aneufinder: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.20.0.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus 75817956c1
gnu: r-hdf5array: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.20.0.
[arguments]: Remove.
[propagated-inputs]: Add r-rhdf5filters.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus bfa23ec526
gnu: r-cytoml: Update to 2.4.0. 
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.4.0.
[arguments]: Remove.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus 764e2dba20
gnu: r-flowworkspace: Update to 4.4.0. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.4.0.
[arguments]: Remove.
[propagated-inputs]: Add r-delayedarray and r-s4vectors.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus b9751b629c
gnu: r-ncdfflow: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.38.0.
[arguments]: Remove.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus 5c37a048bb
gnu: r-cytolib: Update to 2.4.0. 
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.4.0.
[arguments]: Remove.
[native-inputs]: Remove pkg-config.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus 782d27f77d
gnu: r-rhdf5: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.36.0.
[arguments]: Remove.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus 87d06a725f
gnu: r-mzr: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.26.0.
[arguments]: Remove obsolute substitution.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus 5d13aab6ca
gnu: r-msnid: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.26.0.
[arguments]: Set HOME variable.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus d0a7dc0cb6
gnu: r-bioccheck: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.28.0.
[arguments]: Remove.
 2021-06-05 09:12:39 +02:00
Ricardo Wurmus 1b0338d76b
gnu: r-rhdf5lib: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.14.0.
[source]: Update deletions.
[arguments]: Update substitutions.
[inputs]: Move zlib from here...
[propagated-inputs]: ...to here.
 2021-06-05 09:12:39 +02:00
Ricardo Wurmus 53ec97713a
gnu: Add r-metapod. 
* gnu/packages/bioconductor.scm (r-metapod): New variable.
 2021-06-05 09:12:39 +02:00
Ricardo Wurmus 8caab75883
gnu: Add r-ggtree. 
* gnu/packages/bioconductor.scm (r-ggtree): New variable.
 2021-06-05 09:12:39 +02:00
Ricardo Wurmus ab4a91b252
gnu: Add r-treeio. 
* gnu/packages/bioconductor.scm (r-treeio): New variable.
 2021-06-05 09:12:39 +02:00
Ricardo Wurmus fd4fa40ac4
gnu: Add r-scaledmatrix. 
* gnu/packages/bioconductor.scm (r-scaledmatrix): New variable.
 2021-06-05 09:12:39 +02:00
Ricardo Wurmus efefb2be3a
gnu: Add r-trajectoryutils. 
* gnu/packages/bioconductor.scm (r-trajectoryutils): New variable.
 2021-06-05 09:12:39 +02:00
Ricardo Wurmus ce99b4da63
gnu: Add r-restfulr. 
* gnu/packages/bioconductor.scm (r-restfulr): New variable.
 2021-06-05 09:12:39 +02:00
Ricardo Wurmus 8cc146b24a
gnu: r-bisquerna: Update to 1.0.5. 
* gnu/packages/bioconductor.scm (r-bisquerna): Update to 1.0.5.
[native-inputs]: Add r-knitr.
 2021-06-02 17:27:07 +02:00
Ricardo Wurmus ec543ba672
gnu: r-chipseeker: Move out of experiment section. 
* gnu/packages/bioconductor.scm (r-chipseeker): Move the package from the
"experiment" section to the section for regular Bioconductor packages.
 2021-05-31 15:54:41 +02:00
Ricardo Wurmus a6e7afd4d5
gnu: r-spp: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-spp): Move from here...
* gnu/packages/bioconductor.scm (r-spp): ...to here.
 2021-05-31 15:53:20 +02:00
Ricardo Wurmus 1a6108ce2b
gnu: r-geneoverlap: Move out of experiment section. 
* gnu/packages/bioconductor.scm (r-geneoverlap): Move the package definition
out of the "experiment" section into the section for regular Bioconductor
packages.
 2021-05-31 15:53:09 +02:00
zimoun c294c0d782
gnu: r-methylkit: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-methylkit): Move from here...
* gnu/packages/bioconductor.scm (r-methylkit): ...to here.
 2021-05-31 15:39:49 +02:00
zimoun 7ab44aeed6
gnu: r-copywriter: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-copywriter): Move from here...
* gnu/packages/bioconductor.scm (r-copywriter): ...to here.
 2021-05-31 15:39:49 +02:00
zimoun 36cb01066c
gnu: r-copyhelper: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-copyhelper): Move from here...
* gnu/packages/bioconductor.scm (r-copyhelper): ...to here.
[source]: Repalce 'string-append' by 'bioconductor-uri' with 'experiment.
 2021-05-31 15:39:47 +02:00
zimoun 31e50e1f48
gnu: r-chipseq: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-chipseq): Move from here...
* gnu/packages/bioconductor.scm (r-chipseq): ...to here.
 2021-05-31 15:39:00 +02:00
zimoun 0eaa75c811
gnu: r-rhdf5: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-rhdf5): Move from here...
* gnu/packages/bioconductor.scm (r-rhdf5): ...to here.
 2021-05-31 15:39:00 +02:00
zimoun cc1dbea883
gnu: r-annotationfilter: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-annotationfilter): Move from here...
* gnu/packages/bioconductor.scm (r-annotationfilter): ...to here.
 2021-05-31 15:39:00 +02:00
zimoun 67e99369c1
gnu: r-rhdf5filters: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-rhdf5filters): Move from here...
* gnu/packages/bioconductor.scm (r-rhdf5filters): ...to here.
 2021-05-31 15:39:00 +02:00
zimoun b6e84d30eb
gnu: r-tximport: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-tximport): Move from here...
* gnu/packages/bioconductor.scm (r-tximport): ...to here.
 2021-05-31 15:39:00 +02:00
zimoun bf8f502956
gnu: r-mutationalpatterns: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Move from here...
* gnu/packages/bioconductor.scm (r-mutationalpatterns): ...to here.
 2021-05-31 15:39:00 +02:00
zimoun 7360dea624
gnu: r-rcas: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-rcas): Move from here...
* gnu/packages/bioconductor.scm (r-rcas): ...to here.
 2021-05-31 15:39:00 +02:00
zimoun 45b6db4fb4
gnu: r-bamsignals: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bamsignals): Move from here...
* gnu/packages/bioconductor.scm (r-bamsignals): ...to here.
 2021-05-31 15:38:59 +02:00
zimoun 043c309d15
gnu: r-rhtslib: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-rhtslib): Move from here...
* gnu/packages/bioconductor.scm (r-rhtslib): ...to here.
 2021-05-31 15:38:59 +02:00
zimoun e0c81584ea
gnu: r-zlibbioc: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-zlibbioc): Move from here...
* gnu/packages/bioconductor.scm (r-zlibbioc): ...to here.
 2021-05-31 15:38:58 +02:00
zimoun 0006a66415
gnu: r-seqlogo: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-seqlogo): Move from here...
* gnu/packages/bioconductor.scm (r-seqlogo): ...to here.
 2021-05-31 15:38:21 +02:00
zimoun c2a18aee16
gnu: r-motifrg: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-motifrg): Move from here...
* gnu/packages/bioconductor.scm (r-motifrg): ...to here.
 2021-05-31 15:38:00 +02:00
zimoun 621aa3b442
gnu: r-sva: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-sva): Move from here...
* gnu/packages/bioconductor.scm (r-sva): ...to here.
 2021-05-31 15:38:00 +02:00
zimoun 900ef8fb1e
gnu: r-protgenerics: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-protgenerics): Move from here...
* gnu/packages/bioconductor.scm (r-protgenerics): ...to here.
 2021-05-31 15:38:00 +02:00
zimoun 720d2694a5
gnu: r-mzr: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-mzr): Move from here...
* gnu/packages/bioconductor.scm (r-mzr): ...to here.
 2021-05-31 15:38:00 +02:00
zimoun 88cf24febb
gnu: r-ensembldb: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-ensembldb): Move from here...
* gnu/packages/bioconductor.scm (r-ensembldb): ...to here.
 2021-05-31 15:37:59 +02:00
zimoun fea33b9d1e
gnu: r-biovizbase: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-biovizbase): Move from here...
* gnu/packages/bioconductor.scm (r-biovizbase): ...to here.
 2021-05-31 15:37:59 +02:00
zimoun 8d4311bb8e
gnu: r-vsn: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-vsn): Move from here...
* gnu/packages/bioconductor.scm (r-vsn): ...to here.
 2021-05-31 15:37:59 +02:00
zimoun 96ae9822c4
gnu: r-affyio: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-affyio): Move from here...
* gnu/packages/bioconductor.scm (r-affyio): ...to here.
 2021-05-31 15:37:59 +02:00
zimoun 8182e6a6fd
gnu: r-organismdbi: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-organismdbi): Move from here...
* gnu/packages/bioconductor.scm (r-organismdbi): ...to here.
 2021-05-31 15:37:59 +02:00
zimoun d1ea2b7c8b
gnu: r-dirichletmultinomial: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Move from here...
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): ...to here.
 2021-05-31 15:37:59 +02:00
zimoun 0b5b41c561
gnu: r-genomicfiles: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-genomicfiles): Move from here...
* gnu/packages/bioconductor.scm (r-genomicfiles): ...to here.
 2021-05-31 15:37:59 +02:00
zimoun ff65fa90d2
gnu: r-complexheatmap: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-complexheatmap): Move from here...
* gnu/packages/bioconductor.scm (r-complexheatmap): ...to here.
 2021-05-31 15:37:59 +02:00
zimoun 84019edf38
gnu: r-gage: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-gage): Move from here...
* gnu/packages/bioconductor.scm (r-gage): ...to here.
 2021-05-31 15:37:59 +02:00
zimoun d0a5503752
gnu: r-keggrest: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-keggrest): Move from here...
* gnu/packages/bioconductor.scm (r-keggrest): ...to here.
 2021-05-31 15:37:58 +02:00
zimoun 22cda2e432
gnu: r-affy: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-affy): Move from here...
* gnu/packages/bioconductor.scm (r-affy): ...to here.
 2021-05-31 15:37:58 +02:00
zimoun 32ae36e96f
gnu: r-fastseg: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-fastseg): Move from here...
* gnu/packages/bioconductor.scm (r-fastseg): ...to here.
 2021-05-31 15:37:58 +02:00
zimoun 9644745692
gnu: r-annotationhub: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-annotationhub): Move from here...
* gnu/packages/bioconductor.scm (r-annotationhub): ...to here.
 2021-05-31 15:37:58 +02:00
zimoun dfe6224f5f
gnu: r-interactivedisplaybase: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Move from here...
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): ...to here.
 2021-05-31 15:37:58 +02:00
zimoun f6f43a2d40
gnu: r-edaseq: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-edaseq): Move from here...
* gnu/packages/bioconductor.scm (r-edaseq): ...to here.
 2021-05-31 15:37:58 +02:00
zimoun ef954bb488
gnu: r-deseq: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-deseq): Move from here...
* gnu/packages/bioconductor.scm (r-deseq): ...to here.
 2021-05-31 15:37:58 +02:00
zimoun bb118f20fe
gnu: r-aroma-light: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-aroma-light): Move from here...
* gnu/packages/bioconductor.scm (r-aroma-light): ...to here.
 2021-05-31 15:37:58 +02:00
zimoun 7756e08b44
gnu: r-mzid: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-mzid): Move from here...
* gnu/packages/bioconductor.scm (r-mzid): ...to here.
 2021-05-31 15:37:58 +02:00
zimoun ad46c8aa7f
gnu: r-pcamethods: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-pcamethods): Move from here...
* gnu/packages/bioconductor.scm (r-pcamethods): ...to here.
 2021-05-31 15:37:57 +02:00
zimoun d7fa9c1ffd
gnu: r-genomationdata: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-genomationdata): Move from here...
* gnu/packages/bioconductor.scm (r-genomationdata): ...to here.
[source]: Replace 'string-append' by 'bioconductor-uri' with 'experiment.
 2021-05-31 15:37:55 +02:00
zimoun f8fe5497c7
gnu: r-genomation: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-genomation): Move from here...
* gnu/packages/bioconductor.scm (r-genomation): ...to here.
 2021-05-31 15:36:32 +02:00
zimoun f3b50aa4fd
gnu: r-go-db: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-go-db): Move from here...
* gnu/packages/bioconductor.scm (r-go-db): ...to here.
[source]: Replace 'string-append' by 'bioconductor-uri' with 'annotation.
 2021-05-31 15:35:53 +02:00
zimoun 14fb30e5f6
gnu: r-seqpattern: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-seqpattern): Move from here...
* gnu/packages/bioconductor.scm (r-seqpattern): ...to here.
 2021-05-31 15:35:30 +02:00
zimoun b832fddbfc
gnu: r-impute: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-impute): Move from here...
* gnu/packages/bioconductor.scm (r-impute): ...to here.
 2021-05-31 15:34:45 +02:00
zimoun a2a1d86a77
gnu: r-samr: Move to (gnu packages bioconductor). 
* gnu/packages/cran.scm (r-samr): Move from here...
* gnu/packages/bioconductor.scm (r-samr): ...to here.
 2021-05-31 15:34:45 +02:00
zimoun 4f030cc0db
gnu: r-msnbase: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-msnbase): Move from here...
* gnu/packages/bioconductor.scm (r-msnbase): ...to here.
 2021-05-31 15:34:44 +02:00
zimoun 8c7c78bfce
gnu: r-msnid: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-msnid): Move from here...
* gnu/packages/bioconductor.scm (r-msnid): ...to here.
 2021-05-31 15:34:44 +02:00
zimoun 537d48d869
gnu: r-bsgenome: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome): Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome): ...to here.
 2021-05-31 15:34:44 +02:00
zimoun 90bbab5cff
gnu: r-topgo: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-topgo): Move from here...
* gnu/packages/bioconductor.scm (r-topgo): ...to here.
 2021-05-31 15:34:44 +02:00
zimoun f78ff75b41
gnu: r-genomicfeatures: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Move from here...
* gnu/packages/bioconductor.scm (r-genomicfeatures): ...to here.
 2021-05-31 15:34:44 +02:00
zimoun a88230a1bc
gnu: r-rtracklayer: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Move from here...
* gnu/packages/bioconductor.scm (r-rtracklayer): ...to here.
 2021-05-31 15:34:44 +02:00
zimoun ca1a015777
gnu: r-genomicalignments: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Move from here...
* gnu/packages/bioconductor.scm (r-genomicalignments): ...to here.
 2021-05-31 15:34:39 +02:00
Roel Janssen cf9ddbd4bc
gnu: Add r-tradeseq. 
* gnu/packages/bioconductor.scm (r-tradeseq): New variable.
 2021-05-27 13:40:10 +02:00
Roel Janssen 5abf8a56ee
gnu: Add r-slingshot. 
* gnu/packages/bioconductor.scm (r-slingshot): New variable.
 2021-05-27 13:31:29 +02:00
Roel Janssen 2fc74f3176
gnu: Add r-clusterexperiment. 
* gnu/packages/bioconductor.scm (r-clusterexperiment): New variable.
 2021-05-26 23:54:14 +02:00
Roel Janssen 700b10f181
gnu: Add r-mbkmeans. 
* gnu/packages/bioconductor.scm (r-mbkmeans): New variable.
 2021-05-26 23:49:28 +02:00
Roel Janssen 1edec0e899
gnu: Add r-zinbwave. 
* gnu/packages/bioconductor.scm (r-zinbwave): New variable.
 2021-05-26 23:09:06 +02:00
Roel Janssen 4e9bb49688
gnu: Add r-structuralvariantannotation. 
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): New variable.
 2021-05-26 16:07:17 +02:00
Roel Janssen f921981536
gnu: Add r-decipher. 
* gnu/packages/bioconductor.scm (r-decipher): New variable.
 2021-05-26 13:31:20 +02:00
Roel Janssen 99873359ed
gnu: Add r-deepsnv. 
* gnu/packages/bioconductor.scm (r-deepsnv): New variable.
 2021-05-26 13:13:56 +02:00
Roel Janssen 834f649590
gnu: Add r-geneoverlap. 
* gnu/packages/bioconductor.scm (r-geneoverlap): New variable.
 2021-05-26 13:09:34 +02:00
Roel Janssen 94b8ad4490
gnu: Add r-chipseeker. 
* gnu/packages/bioconductor.scm (r-chipseeker): New variable.
 2021-05-26 10:21:32 +02:00
Roel Janssen 9048e7f3b4
gnu: Add r-bsgenome-btaurus-ucsc-bostau8. 
* gnu/packages/bioconductor.scm (r-bsgenome-btaurus-ucsc-bostau8): New
  variable.
 2021-05-26 09:42:01 +02:00
Roel Janssen b84ead8c04
gnu: Add r-aneufinder. 
* gnu/packages/bioconductor.scm (r-aneufinder): New variable.
 2021-05-26 09:13:54 +02:00
Roel Janssen 189311660b
gnu: Add r-aneufinderdata. 
* gnu/packages/bioconductor.scm (r-aneufinderdata): New variable.
 2021-05-26 09:13:08 +02:00
Ricardo Wurmus 1d7470874e
gnu: r-multidataset: Update to 1.18.2. 
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.18.2.
 2021-05-20 14:43:34 +02:00
Ricardo Wurmus bee797fa93
gnu: Add r-guitar. 
* gnu/packages/bioconductor.scm (r-guitar): New variable.
 2021-05-04 15:37:04 +02:00
Ricardo Wurmus 7694acebd1
gnu: r-summarizedexperiment: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Move variable from here...
* gnu/packages/bioconductor.scm (r-summarizedexperiment): ...to here.
 2021-05-04 10:11:34 +02:00
Ricardo Wurmus b602ec9fba
gnu: r-mixomics: Update to 6.14.1. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.14.1.
[propagated-inputs]: Add r-biocparallel.
 2021-05-04 09:47:37 +02:00
Ricardo Wurmus 4286233e77
gnu: r-catalyst: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.14.1.
 2021-05-04 09:47:37 +02:00
Ricardo Wurmus 2191a414ea
gnu: r-scran: Update to 1.18.7. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.7.
 2021-05-04 09:47:37 +02:00
Ricardo Wurmus 3c59d34107
gnu: r-biocpkgtools: Update to 1.8.2. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.8.2.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus b75b3ba2c7
gnu: r-experimenthub: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.16.1.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus c1942727cf
gnu: r-bioassayr: Update to 1.28.3. 
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.3.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus 5bd5f755f2
gnu: r-universalmotif: Update to 1.8.5. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.8.5.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus b410f072b5
gnu: r-icobra: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.18.1.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus b2bdc2f130
gnu: r-interactionset: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.18.1.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus 390098ddd4
gnu: r-systempiper: Update to 1.24.6. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 1.24.6.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus fc1aef2ccd
gnu: r-genomeinfodb: Update to 1.26.7. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.26.7.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus 8bd3170bcf
gnu: r-biocgenerics: Update to 0.36.1. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.36.1.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus aa9a94bba9
gnu: r-abn: Update to 2.5-0. 
* gnu/packages/cran.scm (r-abn): Move from here...
* gnu/packages/bioconductor.scm (r-abn): ...to here; update to 2.5-0.
[propagated-inputs]: Add r-rgraphviz.
 2021-05-04 07:27:43 +02:00
Vagrant Cascadian eb34afe1be
gnu: r-circrnaprofiler: Fix grammar. 
* gnu/packages/bioconductor.scm (r-circrnaprofiler)[description]:
  Remove gratuitous use of "allows to".
 2021-04-21 08:34:21 -07:00
Vagrant Cascadian 0e434dad70
gnu: r-msmstests: Fix typo. 
* gnu/packages/bioconductor.scm (r-msmstests)[description]: Fix "This
  package" typo.
 2021-04-21 08:30:47 -07:00
hli eb8da54170
gnu: Add r-txdb-dmelanogaster-ucsc-dm6-ensgene. 
* gnu/packages/bioconductor.scm (r-txdb-dmelanogaster-ucsc-dm6-ensgene):
New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-04-12 18:25:40 +02:00
Tobias Geerinckx-Rice 48358a25ca
gnu: r-gagedata: Fix typo in synopsis. 
* gnu/packages/bioconductor.scm (r-gagedata)[synopsis]: Fix typo and add
article.
 2021-04-10 14:11:34 +02:00
Tobias Geerinckx-Rice 04a5e7918d
gnu: r-chromstar: Fix typo in description. 
* gnu/packages/bioconductor.scm (r-chromstar)[description]: Fix typo.
 2021-04-10 14:11:32 +02:00
Tobias Geerinckx-Rice 37d4706166
gnu: r-msmstests: Fix typos in description. 
* gnu/packages/bioconductor.scm (r-msmstests)[description]: Fix typos.
 2021-04-10 14:11:29 +02:00
Ricardo Wurmus e0147aa46f
gnu: r-gviz: Update to 1.34.1. 
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.34.1.
 2021-04-08 13:28:24 +02:00
Ricardo Wurmus 14a4c30828
gnu: r-universalmotif: Update to 1.8.4. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.8.4.
 2021-04-08 13:28:24 +02:00
Ricardo Wurmus 8a7933f37e
gnu: r-rsubread: Update to 2.4.3. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.4.3.
 2021-04-08 13:28:24 +02:00
Ricardo Wurmus 215b0ced02
gnu: r-chippeakanno: Update to 3.24.2. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.24.2.
[propagated-inputs]: Add r-dplyr.
 2021-04-08 13:28:24 +02:00
Ricardo Wurmus 55185f9b3f
gnu: r-diffbind: Update to 3.0.15. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.15.
 2021-04-08 13:28:24 +02:00
Ricardo Wurmus 9d2ca98213
gnu: r-genomeinfodb: Update to 1.26.6. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.26.6.
 2021-04-08 13:28:24 +02:00
Ricardo Wurmus fb73d7d10d
gnu: r-delayedarray: Update to 0.16.3. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.16.3.
 2021-04-08 13:28:23 +02:00
zimoun 23686ba3eb
Revert "Revert some commits that caused `guix pull` to fail." 
This reverts commit 8ec0ca8faf.
 2021-03-31 21:23:45 +02:00
zimoun 9282218508
gnu: r-absfiltergsea: Move to (gnu packages bioconductor). 
* gnu/packages/cran.scm (r-absfiltergsea): Move this variable from here...
* gnu/packages/bioconductor.scm (r-absfiltergsea): ...to here.
 2021-03-31 21:23:45 +02:00
zimoun 172b85aa99
gnu: r-bisquerna: Move to (gnu packages bioconductor). 
* gnu/packages/cran.scm (r-bisquerna): Move this variable from here...
* gnu/packages/bioconductor.scm (r-bisquerna): ...to here.
 2021-03-31 21:23:45 +02:00
Hong Li 0ff888108a
gnu: Add r-chromstar. 
* gnu/packages/bioconductor.scm (r-chromstar): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2021-03-22 14:27:13 +01:00
Hong Li 1f958631ef
gnu: Add r-chromstardata. 
* gnu/packages/bioconductor.scm (r-chromstardata): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2021-03-22 14:26:58 +01:00
Leo Famulari 8ec0ca8faf
Revert some commits that caused `guix pull` to fail. 
This reverts commits 821e643921 through
8f9fd9b70c.

Specifically, these commits caused the build failure of
guix-package-cache.drv like this:

------
(repl-version 0 1 1)
Generating package cache for '/gnu/store/vyz7q26kxxd4z70m24rkkqqhaizdla7g-profile'...
(exception unbound-variable (value #f) (value "Unbound variable: ~S") (value (r-biobase)) (value #f))
 2021-03-15 19:52:34 -04:00
Ricardo Wurmus 8f9fd9b70c
gnu: r-biocparallel: Build reproducibly. 
* gnu/packages/bioconductor.scm (r-biocparallel)[arguments]: Add phase
"make-reproducible".
 2021-03-15 23:31:58 +01:00
zimoun d99a18252c
gnu: r-delayedarray: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-delayedarray): Move from here...
* gnu/packages/bioconductor.scm (r-delayedarray): ...to here.
 2021-03-15 23:30:26 +01:00
zimoun adf45daae9
gnu: r-rsamtools: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-rsamtools): Move from here...
* gnu/packages/bioconductor.scm (r-rsamtools): ...to here.
 2021-03-15 23:30:26 +01:00
zimoun b1a19ab6e2
gnu: r-biostrings: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-biostrings): Move from here...
* gnu/packages/bioconductor.scm (r-biostrings): ...to here.
 2021-03-15 23:30:26 +01:00
zimoun eab9807fb3
gnu: r-biocparallel: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-biocparallel): Move from here...
* gnu/packages/bioconductor.scm (r-biocparallel): ...to here.
 2021-03-15 23:30:26 +01:00
zimoun c11b541fba
gnu: r-biomart: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-biomart): Move from here...
* gnu/packages/bioconductor.scm (r-biomart): ...to here.
 2021-03-15 23:30:26 +01:00
zimoun 16c7e79ebb
gnu: r-annotationdbi: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Move from here...
* gnu/packages/bioconductor.scm (r-annotationdbi): ...to here.
 2021-03-15 23:30:26 +01:00
zimoun 457de7f401
gnu: r-biobase: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-biobase): Move from here...
* gnu/packages/bioconductor.scm (r-biobase): ...to here.
 2021-03-15 23:30:26 +01:00
zimoun f3f09b99cd
gnu: r-genomicranges: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-genomicranges): Move from here...
* gnu/packages/bioconductor.scm (r-genomicranges): ...to here.
 2021-03-15 23:30:26 +01:00
zimoun e56b3db82e
gnu: r-xvector: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-xvector): Move from here...
* gnu/packages/bioconductor.scm (r-xvector): ...to here.
 2021-03-15 23:30:26 +01:00
zimoun 821e643921
gnu: r-limma: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-limma): Move from here...
* gnu/packages/bioconductor.scm (r-limma): ...to here.
 2021-03-15 23:30:26 +01:00
Ricardo Wurmus 1ada8ea96c
gnu: r-scater: Update to 1.18.6. 
* gnu/packages/bioconductor.scm (r-scater): Update to 1.18.6.
 2021-03-15 15:03:08 +01:00
Ricardo Wurmus fa6bb614c8
gnu: r-cytoml: Update to 2.2.2. 
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.2.2.
[inputs]: Add zlib.
 2021-03-15 15:03:08 +01:00
Ricardo Wurmus 11dc49afc2
gnu: r-diffbind: Update to 3.0.14. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.14.
 2021-03-15 15:03:07 +01:00
Ricardo Wurmus ee61edb621
gnu: r-reportingtools: Update to 2.30.2. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.30.2.
 2021-03-15 15:03:07 +01:00
Ricardo Wurmus fa227c9640
gnu: r-genomeinfodb: Update to 1.26.4. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.26.4.
 2021-03-15 15:03:07 +01:00
Ricardo Wurmus b45c625f10
gnu: r-deseq2: Update to 1.30.1. 
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.30.1.
 2021-03-15 15:03:07 +01:00
zimoun bf612ead76
gnu: r-variantannotation: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-variantannotation): Move from here...
* gnu/packages/bioconductor.scm (r-variantannotation): ...to here.
 2021-03-15 14:06:24 +01:00
zimoun 082f3c5433
gnu: r-edger: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-edger): Move from here...
* gnu/packages/bioconductor.scm (r-edger): ...to here.
 2021-03-15 14:06:16 +01:00